Wall clock time and date at job start Mon Mar 30 2020 02:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 N 1.46499 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99872 * 274.77844 * 4 3 2 6 6 H 1.08003 * 120.00157 * 38.22546 * 5 4 3 7 7 C 1.38814 * 119.99942 * 218.22273 * 5 4 3 8 8 N 1.31626 * 119.99582 * 20.67967 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 200.67869 * 7 5 4 10 10 H 1.48501 * 109.47167 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.46903 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47108 * 329.99789 * 9 7 5 13 13 C 1.46497 * 120.00056 * 94.77150 * 4 3 2 14 14 C 1.50703 * 109.47134 * 270.00641 * 13 4 3 15 15 C 1.38289 * 119.97090 * 270.02130 * 14 13 4 16 16 C 1.38243 * 120.11185 * 180.02562 * 15 14 13 17 17 C 1.38162 * 120.05528 * 359.67906 * 16 15 14 18 18 C 1.38715 * 119.94529 * 0.57435 * 17 16 15 19 19 O 1.35899 * 120.05724 * 179.72609 * 18 17 16 20 20 C 1.42899 * 116.99887 * 5.21651 * 19 18 17 21 21 C 1.53006 * 109.46907 * 153.97811 * 20 19 18 22 22 C 1.52999 * 109.47341 * 273.97608 * 20 19 18 23 23 C 1.38123 * 119.97352 * 89.99846 * 14 13 4 24 24 H 1.09007 * 109.47230 * 60.00238 * 1 2 3 25 25 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.00260 * 1 2 3 27 27 H 1.08994 * 109.47045 * 240.00137 * 2 1 3 28 28 H 1.09002 * 109.46839 * 120.00016 * 2 1 3 29 29 H 1.09008 * 109.47025 * 59.99985 * 3 2 1 30 30 H 1.08994 * 109.47224 * 300.00123 * 3 2 1 31 31 H 0.96995 * 119.99497 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47345 * 150.00278 * 13 4 3 33 33 H 1.09001 * 109.46956 * 30.00365 * 13 4 3 34 34 H 1.07998 * 119.94269 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.97447 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.02854 * 180.29755 * 17 16 15 37 37 H 1.08997 * 109.47464 * 33.98327 * 20 19 18 38 38 H 1.09002 * 109.47077 * 60.00026 * 21 20 19 39 39 H 1.09001 * 109.47354 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.46840 * 300.00517 * 21 20 19 41 41 H 1.09002 * 109.47222 * 300.00328 * 22 20 19 42 42 H 1.09001 * 109.47022 * 60.00195 * 22 20 19 43 43 H 1.09001 * 109.46854 * 180.02562 * 22 20 19 44 44 H 1.07998 * 120.02850 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.3440 1.1828 6 1 3.8225 0.6978 1.9667 7 6 5.3540 2.0746 1.3735 8 7 5.5917 3.1385 0.6358 9 14 6.5839 1.5480 2.6771 10 1 7.5663 0.6081 2.0799 11 1 7.2954 2.7430 3.1977 12 1 5.8677 0.8745 3.7900 13 6 4.2380 1.5480 -1.2634 14 6 4.4893 0.1682 -1.8149 15 6 5.6416 -0.5143 -1.4700 16 6 5.8754 -1.7799 -1.9746 17 6 4.9547 -2.3688 -2.8198 18 6 3.8006 -1.6842 -3.1715 19 8 2.8962 -2.2591 -4.0072 20 6 3.1399 -3.6127 -4.3949 21 6 1.8137 -4.2883 -4.7496 22 6 4.0657 -3.6356 -5.6128 23 6 3.5685 -0.4139 -2.6640 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 6.4058 3.6487 0.7689 32 1 5.1903 2.0492 -1.0905 33 1 3.6492 2.1231 -1.9780 34 1 6.3604 -0.0574 -0.8059 35 1 6.7762 -2.3108 -1.7041 36 1 5.1355 -3.3596 -3.2100 37 1 3.6109 -4.1477 -3.5703 38 1 1.3426 -3.7534 -5.5743 39 1 1.9996 -5.3210 -5.0449 40 1 1.1542 -4.2719 -3.8820 41 1 3.5946 -3.1007 -6.4374 42 1 5.0105 -3.1543 -5.3600 43 1 4.2513 -4.6682 -5.9087 44 1 2.6688 0.1195 -2.9331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058921176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:07 Heat of formation + Delta-G solvation = -10.885840 kcal Electronic energy + Delta-G solvation = -22272.671885 eV Core-core repulsion = 19190.414592 eV Total energy + Delta-G solvation = -3082.257293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.87229 -37.63678 -35.76171 -33.19498 -32.87144 -31.40239 -29.99451 -29.11496 -27.39457 -25.73607 -25.48250 -22.76040 -21.94293 -21.63865 -20.21162 -19.70069 -17.62682 -16.56435 -15.75572 -15.36082 -15.19856 -14.78965 -14.31276 -14.06730 -13.90233 -13.54218 -13.15486 -13.09082 -12.87179 -12.66853 -12.48632 -12.29371 -12.08371 -11.62523 -11.49910 -11.40137 -11.07661 -11.03619 -10.91048 -10.69947 -10.61846 -10.52637 -10.32120 -10.11321 -10.01507 -9.86850 -9.65738 -8.48593 -8.10464 -7.57486 -6.56668 -5.80380 -3.38240 1.98629 2.10998 3.35003 3.43172 3.44883 3.45469 4.38194 4.51262 4.73028 4.86186 5.01380 5.29637 5.34364 5.38900 5.41683 5.53916 5.57642 5.61160 5.67291 5.75543 5.82355 5.90459 5.97975 6.04237 6.09217 6.13174 6.15605 6.33500 6.36285 6.52081 6.56954 6.67540 6.70654 6.78377 6.87805 7.04130 7.10781 7.24921 7.42613 7.46066 7.67737 7.82757 7.93607 8.52335 9.17642 9.79541 10.38984 11.19411 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.005511 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.526558 B = 5079.134138 C = 6017.406168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.150 3.850 4 N -0.575 5.575 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.893 3.107 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.173 3.827 14 C -0.031 4.031 15 C -0.134 4.134 16 C -0.090 4.090 17 C -0.231 4.231 18 C 0.118 3.882 19 O -0.315 6.315 20 C 0.077 3.923 21 C -0.148 4.148 22 C -0.178 4.178 23 C -0.150 4.150 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -11.562 -9.566 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.024 3.976 4 N -0.293 5.293 5 C -0.383 4.383 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.047 3.953 14 C -0.034 4.034 15 C -0.153 4.153 16 C -0.108 4.108 17 C -0.250 4.250 18 C 0.074 3.926 19 O -0.230 6.230 20 C 0.021 3.979 21 C -0.205 4.205 22 C -0.235 4.235 23 C -0.170 4.170 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.106 -11.292 -9.607 15.384 hybrid contribution 0.923 -0.682 0.714 1.352 sum -3.183 -11.974 -8.893 15.251 Atomic orbital electron populations 1.21713 0.97520 1.00233 1.00881 1.22195 0.93624 1.01082 1.01870 1.20918 0.84981 0.92961 0.98787 1.43684 0.99361 1.84518 1.01732 1.19001 1.06225 1.19650 0.93395 0.92357 1.25164 1.00828 0.94599 0.98000 1.69992 1.25956 1.14880 1.41906 0.86443 0.81726 0.77818 0.81772 1.21171 1.21701 1.20226 1.20081 1.00600 0.88432 0.86167 1.21127 0.91394 0.99924 0.90997 1.21026 0.98605 0.94776 1.00902 1.20860 0.98095 0.95417 0.96471 1.20975 0.96661 1.00960 1.06379 1.18956 0.88938 0.93273 0.91451 1.86084 1.47714 1.27410 1.61818 1.22310 0.96882 0.82025 0.96726 1.21845 0.96172 0.99796 1.02683 1.22360 1.00334 1.02305 0.98538 1.20299 1.01259 0.93597 1.01799 0.93475 0.93986 0.93365 0.92215 0.92760 0.93701 0.94790 0.93451 0.87827 0.94641 0.86169 0.86982 0.86623 0.91117 0.91648 0.90954 0.91729 0.91663 0.91729 0.91512 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.15 -2.83 6.23 -26.73 -0.17 -2.99 16 3 C 0.15 3.20 5.72 -4.04 -0.02 3.18 16 4 N -0.57 -14.09 2.41 -174.61 -0.42 -14.51 16 5 C -0.25 -6.77 9.45 -15.06 -0.14 -6.92 16 6 H 0.06 1.60 7.91 -52.48 -0.42 1.18 16 7 C 0.01 0.39 4.97 -17.43 -0.09 0.30 16 8 N -0.89 -24.76 11.47 55.49 0.64 -24.13 16 9 Si 0.89 21.20 29.60 -169.99 -5.03 16.17 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.17 4.04 5.45 -5.19 -0.03 4.01 16 14 C -0.03 -0.65 5.43 -104.64 -0.57 -1.22 16 15 C -0.13 -2.74 9.70 -39.56 -0.38 -3.12 16 16 C -0.09 -1.58 10.04 -39.61 -0.40 -1.98 16 17 C -0.23 -3.79 8.30 -39.43 -0.33 -4.12 16 18 C 0.12 2.08 6.61 -39.21 -0.26 1.82 16 19 O -0.32 -5.01 9.80 -19.42 -0.19 -5.20 16 20 C 0.08 0.92 2.84 -26.73 -0.08 0.84 16 21 C -0.15 -1.41 9.56 37.16 0.36 -1.06 16 22 C -0.18 -1.83 9.20 37.16 0.34 -1.49 16 23 C -0.15 -2.89 7.74 -39.43 -0.31 -3.19 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.18 5.99 -51.93 -0.31 0.87 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.99 8.08 -51.92 -0.42 0.57 16 30 H 0.03 0.69 7.84 -51.93 -0.41 0.28 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 2.70 5.48 -51.93 -0.28 2.41 16 33 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 34 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.12 1.60 5.48 -52.48 -0.29 1.31 16 37 H 0.07 0.83 6.23 -51.93 -0.32 0.51 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.73 7.05 -51.93 -0.37 0.36 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 2.22 7.99 -52.49 -0.42 1.80 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -28.39 353.33 -8.81 -37.20 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.42 Total: 2.98 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.70 Total: -17.84 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.22 Total: -38.64 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.39 -8.81 -37.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.314 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds