Wall clock time and date at job start Mon Mar 30 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 N 1.46499 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99872 * 274.77844 * 4 3 2 6 6 H 1.08003 * 120.00157 * 38.22546 * 5 4 3 7 7 C 1.38814 * 119.99942 * 218.22273 * 5 4 3 8 8 N 1.31626 * 119.99582 * 20.67967 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 200.67869 * 7 5 4 10 10 H 1.48501 * 109.47167 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.46903 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47108 * 329.99789 * 9 7 5 13 13 C 1.46497 * 120.00056 * 94.77150 * 4 3 2 14 14 C 1.50703 * 109.47134 * 270.00641 * 13 4 3 15 15 C 1.38289 * 119.97090 * 270.02130 * 14 13 4 16 16 C 1.38243 * 120.11185 * 180.02562 * 15 14 13 17 17 C 1.38162 * 120.05528 * 359.67906 * 16 15 14 18 18 C 1.38715 * 119.94529 * 0.57435 * 17 16 15 19 19 O 1.35899 * 120.05724 * 179.72609 * 18 17 16 20 20 C 1.42899 * 116.99887 * 5.21651 * 19 18 17 21 21 C 1.53006 * 109.46907 * 153.97811 * 20 19 18 22 22 C 1.52999 * 109.47341 * 273.97608 * 20 19 18 23 23 C 1.38123 * 119.97352 * 89.99846 * 14 13 4 24 24 H 1.09007 * 109.47230 * 60.00238 * 1 2 3 25 25 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.00260 * 1 2 3 27 27 H 1.08994 * 109.47045 * 240.00137 * 2 1 3 28 28 H 1.09002 * 109.46839 * 120.00016 * 2 1 3 29 29 H 1.09008 * 109.47025 * 59.99985 * 3 2 1 30 30 H 1.08994 * 109.47224 * 300.00123 * 3 2 1 31 31 H 0.96995 * 119.99497 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47345 * 150.00278 * 13 4 3 33 33 H 1.09001 * 109.46956 * 30.00365 * 13 4 3 34 34 H 1.07998 * 119.94269 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.97447 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.02854 * 180.29755 * 17 16 15 37 37 H 1.08997 * 109.47464 * 33.98327 * 20 19 18 38 38 H 1.09002 * 109.47077 * 60.00026 * 21 20 19 39 39 H 1.09001 * 109.47354 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.46840 * 300.00517 * 21 20 19 41 41 H 1.09002 * 109.47222 * 300.00328 * 22 20 19 42 42 H 1.09001 * 109.47022 * 60.00195 * 22 20 19 43 43 H 1.09001 * 109.46854 * 180.02562 * 22 20 19 44 44 H 1.07998 * 120.02850 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.3440 1.1828 6 1 3.8225 0.6978 1.9667 7 6 5.3540 2.0746 1.3735 8 7 5.5917 3.1385 0.6358 9 14 6.5839 1.5480 2.6771 10 1 7.5663 0.6081 2.0799 11 1 7.2954 2.7430 3.1977 12 1 5.8677 0.8745 3.7900 13 6 4.2380 1.5480 -1.2634 14 6 4.4893 0.1682 -1.8149 15 6 5.6416 -0.5143 -1.4700 16 6 5.8754 -1.7799 -1.9746 17 6 4.9547 -2.3688 -2.8198 18 6 3.8006 -1.6842 -3.1715 19 8 2.8962 -2.2591 -4.0072 20 6 3.1399 -3.6127 -4.3949 21 6 1.8137 -4.2883 -4.7496 22 6 4.0657 -3.6356 -5.6128 23 6 3.5685 -0.4139 -2.6640 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 6.4058 3.6487 0.7689 32 1 5.1903 2.0492 -1.0905 33 1 3.6492 2.1231 -1.9780 34 1 6.3604 -0.0574 -0.8059 35 1 6.7762 -2.3108 -1.7041 36 1 5.1355 -3.3596 -3.2100 37 1 3.6109 -4.1477 -3.5703 38 1 1.3426 -3.7534 -5.5743 39 1 1.9996 -5.3210 -5.0449 40 1 1.1542 -4.2719 -3.8820 41 1 3.5946 -3.1007 -6.4374 42 1 5.0105 -3.1543 -5.3600 43 1 4.2513 -4.6682 -5.9087 44 1 2.6688 0.1195 -2.9331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058921176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:06 Heat of formation + Delta-G solvation = -23.937315 kcal Electronic energy + Delta-G solvation = -22273.237839 eV Core-core repulsion = 19190.414592 eV Total energy + Delta-G solvation = -3082.823247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16976 -39.08772 -37.43555 -34.67334 -34.09596 -33.13729 -31.65971 -30.51899 -28.20719 -27.40004 -27.27487 -24.20014 -23.35766 -23.07907 -21.84809 -21.05394 -19.03201 -18.39189 -17.09116 -16.92618 -16.54673 -16.30508 -15.95200 -15.64482 -15.30277 -14.86456 -14.84690 -14.39407 -14.32321 -13.74614 -13.64763 -13.31974 -13.23803 -13.07523 -13.05431 -12.73084 -12.68482 -12.61869 -12.44324 -12.28928 -12.13189 -11.93589 -11.85182 -11.77238 -11.58130 -11.40158 -11.31073 -10.51391 -9.60482 -8.99382 -8.55350 -7.82677 -5.46073 0.52619 0.64136 1.44362 1.46953 1.54803 2.31930 2.50136 2.92809 3.25681 3.84380 3.86490 3.97524 4.02946 4.08525 4.21978 4.26830 4.32476 4.42640 4.50428 4.56073 4.68033 4.71947 4.74976 4.80697 4.85345 4.86547 4.90073 4.97924 5.05105 5.16755 5.22491 5.24095 5.24585 5.29973 5.44125 5.45006 5.55596 5.63393 5.65914 5.72539 5.97824 6.01621 6.48285 6.63142 7.16367 7.83978 8.39055 9.13255 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.005511 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.526558 B = 5079.134138 C = 6017.406168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.148 3.852 4 N -0.589 5.589 5 C -0.260 4.260 6 H 0.048 0.952 7 C -0.026 4.026 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.272 1.272 13 C 0.180 3.820 14 C -0.044 4.044 15 C -0.159 4.159 16 C -0.083 4.083 17 C -0.219 4.219 18 C 0.125 3.875 19 O -0.327 6.327 20 C 0.064 3.936 21 C -0.145 4.145 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -14.447 -10.683 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.022 3.978 4 N -0.309 5.309 5 C -0.391 4.391 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.197 1.197 13 C 0.054 3.946 14 C -0.047 4.047 15 C -0.178 4.178 16 C -0.101 4.101 17 C -0.238 4.238 18 C 0.080 3.920 19 O -0.242 6.242 20 C 0.009 3.991 21 C -0.202 4.202 22 C -0.232 4.232 23 C -0.179 4.179 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.646 -14.202 -10.740 18.402 hybrid contribution 1.019 0.128 0.940 1.392 sum -3.627 -14.074 -9.800 17.529 Atomic orbital electron populations 1.21645 0.94418 1.01675 1.01820 1.21996 0.96213 0.98738 1.00474 1.21013 0.83559 0.94610 0.98589 1.43859 1.00555 1.84963 1.01531 1.19080 1.06804 1.19135 0.94051 0.93476 1.25744 1.02121 0.94579 0.99915 1.70104 1.26227 1.15907 1.43523 0.85568 0.79719 0.77289 0.79743 1.20804 1.21789 1.19734 1.19844 0.98884 0.89979 0.85876 1.20772 0.92619 0.98800 0.92535 1.20947 0.98398 0.96451 1.02022 1.21120 0.99253 0.94132 0.95638 1.21310 0.95446 1.02028 1.05013 1.18962 0.89434 0.92687 0.90950 1.86091 1.47374 1.29670 1.61071 1.22737 0.98799 0.80028 0.97557 1.21879 0.94731 1.01151 1.02409 1.22348 0.99180 1.04057 0.97603 1.20215 1.00873 0.94724 1.02048 0.92277 0.92271 0.92718 0.92894 0.94766 0.94858 0.93870 0.93758 0.90879 0.94698 0.88554 0.84113 0.83216 0.90588 0.91646 0.88063 0.92398 0.91859 0.92802 0.88638 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.91 71.98 0.71 -3.34 16 2 C -0.13 -5.13 6.23 30.59 0.19 -4.94 16 3 C 0.15 6.45 5.72 86.38 0.49 6.94 16 4 N -0.59 -29.95 2.41 -706.34 -1.70 -31.65 16 5 C -0.26 -14.42 9.45 84.03 0.79 -13.62 16 6 H 0.05 2.67 7.91 -2.91 -0.02 2.65 16 7 C -0.03 -1.43 4.97 84.86 0.42 -1.00 16 8 N -0.91 -53.06 11.47 21.65 0.25 -52.82 16 9 Si 0.95 44.59 29.60 68.60 2.03 46.62 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.18 8.78 5.45 85.63 0.47 9.25 16 14 C -0.04 -1.91 5.43 -19.88 -0.11 -2.02 16 15 C -0.16 -6.61 9.70 22.28 0.22 -6.39 16 16 C -0.08 -2.79 10.04 22.25 0.22 -2.56 16 17 C -0.22 -6.63 8.30 22.37 0.19 -6.44 16 18 C 0.12 4.18 6.61 22.51 0.15 4.33 16 19 O -0.33 -9.67 9.80 -92.41 -0.91 -10.57 16 20 C 0.06 1.32 2.84 30.60 0.09 1.40 16 21 C -0.14 -2.28 9.56 71.98 0.69 -1.59 16 22 C -0.17 -2.96 9.20 71.98 0.66 -2.30 16 23 C -0.16 -6.11 7.74 22.37 0.17 -5.94 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 2.08 5.99 -2.39 -0.01 2.07 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.50 8.08 -2.38 -0.02 1.48 16 30 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.07 4.03 5.48 -2.39 -0.01 4.02 16 33 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 34 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.15 3.49 5.48 -2.91 -0.02 3.47 16 37 H 0.08 1.49 6.23 -2.39 -0.01 1.47 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.04 7.05 -2.39 -0.02 1.02 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.12 4.41 7.99 -2.91 -0.02 4.39 16 Total: -1.00 -62.91 353.33 5.98 -56.94 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.95 Total: 19.71 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.36 Total: -28.22 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.45 Total: -84.47 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.91 Total: -10.57 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.91 5.98 -56.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.998 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds