Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35896 * 117.00222 * 2 1 4 4 C 1.38739 * 120.05451 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94239 * 180.29889 * 4 3 2 6 6 C 1.38268 * 120.05453 * 359.41940 * 5 4 3 7 7 C 1.50703 * 119.94591 * 180.30326 * 6 5 4 8 8 N 1.46906 * 109.46610 * 277.95919 * 7 6 5 9 9 C 1.46906 * 110.99321 * 169.17210 * 8 7 6 10 10 C 1.50697 * 109.46772 * 195.82921 * 9 8 7 11 11 H 1.08002 * 120.00257 * 5.04025 * 10 9 8 12 12 C 1.37878 * 120.00113 * 185.04129 * 10 9 8 13 13 N 1.31513 * 119.99776 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99947 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47187 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46593 * 120.00206 * 14 12 10 17 17 H 1.48499 * 109.47368 * 240.00170 * 14 12 10 18 18 C 1.46894 * 110.99898 * 293.12332 * 8 7 6 19 19 C 1.53000 * 109.46896 * 87.96399 * 18 8 7 20 20 C 1.52994 * 109.47305 * 65.91428 * 19 18 8 21 21 C 1.52998 * 109.47105 * 185.91514 * 19 18 8 22 22 C 1.38268 * 120.11039 * 0.59670 * 6 5 4 23 23 C 1.38145 * 120.05878 * 359.68416 * 22 6 5 24 24 H 1.09004 * 109.47359 * 300.00019 * 1 2 3 25 25 H 1.08998 * 109.47772 * 59.99636 * 1 2 3 26 26 H 1.09001 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.02801 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97527 * 179.69472 * 5 4 3 29 29 H 1.08994 * 109.47189 * 37.95852 * 7 6 5 30 30 H 1.08995 * 109.47239 * 157.96227 * 7 6 5 31 31 H 1.09003 * 109.47234 * 315.82645 * 9 8 7 32 32 H 1.09000 * 109.47089 * 75.82979 * 9 8 7 33 33 H 0.96998 * 119.99531 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.46801 * 207.95839 * 18 8 7 35 35 H 1.08998 * 109.47582 * 327.96179 * 18 8 7 36 36 H 1.08997 * 109.47147 * 305.91039 * 19 18 8 37 37 H 1.08999 * 109.47113 * 184.84582 * 20 19 18 38 38 H 1.08997 * 109.47617 * 304.84524 * 20 19 18 39 39 H 1.08997 * 109.47288 * 64.84644 * 20 19 18 40 40 H 1.09003 * 109.47545 * 59.99643 * 21 19 18 41 41 H 1.09004 * 109.47515 * 179.97438 * 21 19 18 42 42 H 1.08998 * 109.47457 * 299.99908 * 21 19 18 43 43 H 1.08005 * 119.97080 * 179.70020 * 22 6 5 44 44 H 1.08002 * 120.02984 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5167 0.0057 6 6 3.3020 3.6757 0.0004 7 6 3.9862 5.0184 0.0003 8 7 4.3740 5.3704 1.3728 9 6 5.2634 6.5395 1.3851 10 6 5.9442 6.6386 2.7259 11 1 5.8003 5.8628 3.4633 12 6 6.7508 7.7199 3.0112 13 7 6.9255 8.6649 2.1135 14 14 7.5941 7.8431 4.6735 15 1 7.2373 6.6610 5.4984 16 1 9.0658 7.8850 4.4799 17 1 7.1501 9.0809 5.3634 18 6 3.1903 5.6006 2.2116 19 6 2.7341 4.2751 2.8248 20 6 3.8018 3.7684 3.7963 21 6 1.4191 4.4871 3.5774 22 6 1.9212 3.6047 0.0012 23 6 1.2915 2.3751 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0208 0.3798 -0.0014 28 1 5.1346 2.5748 0.0103 29 1 4.8756 4.9730 -0.6282 30 1 3.3040 5.7738 -0.3895 31 1 6.0151 6.4325 0.6030 32 1 4.6793 7.4423 1.2065 33 1 7.4932 9.4254 2.3142 34 1 3.4399 6.3022 3.0076 35 1 2.3873 6.0140 1.6014 36 1 2.5853 3.5407 2.0332 37 1 3.5174 2.7838 4.1676 38 1 4.7594 3.6992 3.2803 39 1 3.8895 4.4609 4.6334 40 1 0.6583 4.8481 2.8853 41 1 1.0938 3.5427 4.0139 42 1 1.5678 5.2214 4.3691 43 1 1.3343 4.5114 0.0019 44 1 0.2129 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068817396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -18.130153 kcal Electronic energy + Delta-G solvation = -22355.132115 eV Core-core repulsion = 19272.560686 eV Total energy + Delta-G solvation = -3082.571430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14436 -38.29255 -36.40069 -33.97357 -32.53255 -30.99565 -30.44014 -27.76758 -26.80993 -26.53354 -25.73464 -23.59230 -22.43794 -21.20459 -20.29106 -19.31117 -18.05940 -16.35933 -16.18029 -15.75931 -15.22308 -15.01398 -14.45541 -14.23660 -14.15326 -13.68104 -13.36942 -13.33942 -13.15421 -12.56942 -12.37180 -12.23496 -11.97158 -11.70794 -11.56118 -11.42952 -11.23089 -10.97968 -10.92827 -10.77935 -10.59384 -10.53082 -10.23034 -10.00409 -9.75550 -9.66127 -9.18386 -8.75838 -8.41151 -7.82660 -7.18872 -5.99697 -4.00232 1.54861 1.61907 3.28841 3.32360 3.40187 3.45414 3.94083 4.46074 4.83453 4.98167 5.01802 5.03232 5.10743 5.26600 5.32008 5.35802 5.49970 5.54163 5.59708 5.61861 5.80966 5.87069 5.97191 6.04196 6.18035 6.21000 6.28911 6.34659 6.40777 6.44996 6.53484 6.58278 6.63653 6.73301 6.93931 6.96455 7.06336 7.14242 7.31401 7.39362 7.47063 7.88721 8.14483 8.24972 8.58972 9.09948 9.64168 11.10827 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.004465 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.672589 B = 6269.926545 C = 6574.102370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.090 4.090 7 C 0.092 3.908 8 N -0.526 5.526 9 C 0.192 3.808 10 C -0.500 4.500 11 H 0.067 0.933 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.070 3.930 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.073 4.073 23 C -0.210 4.210 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.025 0.975 32 H -0.006 1.006 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.118 0.882 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 -13.285 -4.068 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.171 4.171 5 C -0.078 4.078 6 C -0.091 4.091 7 C -0.036 4.036 8 N -0.250 5.250 9 C 0.067 3.933 10 C -0.539 4.539 11 H 0.085 0.915 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.059 4.059 19 C -0.120 4.120 20 C -0.189 4.189 21 C -0.201 4.201 22 C -0.092 4.092 23 C -0.229 4.229 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.136 0.864 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.308 -13.677 -3.894 18.808 hybrid contribution -0.264 1.102 0.599 1.281 sum -12.572 -12.576 -3.295 18.085 Atomic orbital electron populations 1.22979 0.78936 1.03438 1.01225 1.86036 1.20949 1.27404 1.89197 1.18972 0.92356 0.83815 0.98011 1.20390 0.91150 0.98608 1.06966 1.20858 1.00241 0.90543 0.96131 1.19859 0.92979 0.95873 1.00396 1.21059 0.98258 0.91512 0.92766 1.62073 1.15556 1.40920 1.06487 1.19778 0.90557 0.85021 0.97939 1.21243 1.26990 1.05847 0.99783 0.91472 1.24985 0.96931 0.95722 0.97046 1.69970 1.39145 1.10730 1.34220 0.86502 0.79261 0.77890 0.84167 1.19606 1.21111 1.21236 1.22047 0.90671 0.96135 0.97013 1.21400 0.93779 0.98560 0.98253 1.21654 1.00236 0.98326 0.98672 1.21806 0.97629 1.00673 1.00016 1.20800 0.94218 0.96722 0.97432 1.21081 0.99485 0.92362 1.09926 0.92811 0.92915 0.88658 0.85675 0.85100 0.90554 0.95280 0.95663 0.98796 0.93099 0.90404 0.96435 0.90184 0.95024 0.90873 0.93685 0.93723 0.93589 0.93080 0.86365 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.99 10.50 -19.41 -0.20 -4.19 16 3 C 0.11 1.52 6.69 -39.21 -0.26 1.26 16 4 C -0.15 -2.10 9.99 -39.43 -0.39 -2.49 16 5 C -0.06 -0.87 9.67 -39.60 -0.38 -1.25 16 6 C -0.09 -1.38 3.47 -104.60 -0.36 -1.75 16 7 C 0.09 1.62 5.01 -4.97 -0.02 1.59 16 8 N -0.53 -10.85 3.79 -237.51 -0.90 -11.75 16 9 C 0.19 4.85 4.67 -4.97 -0.02 4.83 16 10 C -0.50 -13.71 8.32 -34.44 -0.29 -13.99 16 11 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 12 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 C 0.07 1.34 3.93 -3.83 -0.02 1.33 16 19 C -0.10 -1.69 2.62 -90.62 -0.24 -1.93 16 20 C -0.13 -2.33 9.14 37.15 0.34 -2.00 16 21 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 22 C -0.07 -1.01 7.30 -39.60 -0.29 -1.30 16 23 C -0.21 -2.66 8.95 -39.43 -0.35 -3.02 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 30 H 0.03 0.50 7.76 -51.93 -0.40 0.10 16 31 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 32 H -0.01 -0.16 8.05 -51.93 -0.42 -0.58 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 1.70 7.04 -51.92 -0.37 1.34 16 35 H 0.02 0.32 7.64 -51.93 -0.40 -0.08 16 36 H 0.08 1.33 3.84 -51.93 -0.20 1.13 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.12 1.54 8.05 -52.48 -0.42 1.12 16 44 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -29.61 351.03 -8.62 -38.24 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.47 Total: -0.56 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.05 Total: -17.80 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.16 Total: -37.56 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.61 -8.62 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068817396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.106 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds