Wall clock time and date at job start Mon Mar 30 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35896 * 117.00222 * 2 1 4 4 C 1.38739 * 120.05451 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94239 * 180.29889 * 4 3 2 6 6 C 1.38268 * 120.05453 * 359.41940 * 5 4 3 7 7 C 1.50703 * 119.94591 * 180.30326 * 6 5 4 8 8 N 1.46906 * 109.46610 * 277.95919 * 7 6 5 9 9 C 1.46906 * 110.99321 * 169.17210 * 8 7 6 10 10 C 1.50697 * 109.46772 * 195.82921 * 9 8 7 11 11 H 1.08002 * 120.00257 * 5.04025 * 10 9 8 12 12 C 1.37878 * 120.00113 * 185.04129 * 10 9 8 13 13 N 1.31513 * 119.99776 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99947 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47187 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46593 * 120.00206 * 14 12 10 17 17 H 1.48499 * 109.47368 * 240.00170 * 14 12 10 18 18 C 1.46894 * 110.99898 * 293.12332 * 8 7 6 19 19 C 1.53000 * 109.46896 * 87.96399 * 18 8 7 20 20 C 1.52994 * 109.47305 * 65.91428 * 19 18 8 21 21 C 1.52998 * 109.47105 * 185.91514 * 19 18 8 22 22 C 1.38268 * 120.11039 * 0.59670 * 6 5 4 23 23 C 1.38145 * 120.05878 * 359.68416 * 22 6 5 24 24 H 1.09004 * 109.47359 * 300.00019 * 1 2 3 25 25 H 1.08998 * 109.47772 * 59.99636 * 1 2 3 26 26 H 1.09001 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.02801 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97527 * 179.69472 * 5 4 3 29 29 H 1.08994 * 109.47189 * 37.95852 * 7 6 5 30 30 H 1.08995 * 109.47239 * 157.96227 * 7 6 5 31 31 H 1.09003 * 109.47234 * 315.82645 * 9 8 7 32 32 H 1.09000 * 109.47089 * 75.82979 * 9 8 7 33 33 H 0.96998 * 119.99531 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.46801 * 207.95839 * 18 8 7 35 35 H 1.08998 * 109.47582 * 327.96179 * 18 8 7 36 36 H 1.08997 * 109.47147 * 305.91039 * 19 18 8 37 37 H 1.08999 * 109.47113 * 184.84582 * 20 19 18 38 38 H 1.08997 * 109.47617 * 304.84524 * 20 19 18 39 39 H 1.08997 * 109.47288 * 64.84644 * 20 19 18 40 40 H 1.09003 * 109.47545 * 59.99643 * 21 19 18 41 41 H 1.09004 * 109.47515 * 179.97438 * 21 19 18 42 42 H 1.08998 * 109.47457 * 299.99908 * 21 19 18 43 43 H 1.08005 * 119.97080 * 179.70020 * 22 6 5 44 44 H 1.08002 * 120.02984 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5167 0.0057 6 6 3.3020 3.6757 0.0004 7 6 3.9862 5.0184 0.0003 8 7 4.3740 5.3704 1.3728 9 6 5.2634 6.5395 1.3851 10 6 5.9442 6.6386 2.7259 11 1 5.8003 5.8628 3.4633 12 6 6.7508 7.7199 3.0112 13 7 6.9255 8.6649 2.1135 14 14 7.5941 7.8431 4.6735 15 1 7.2373 6.6610 5.4984 16 1 9.0658 7.8850 4.4799 17 1 7.1501 9.0809 5.3634 18 6 3.1903 5.6006 2.2116 19 6 2.7341 4.2751 2.8248 20 6 3.8018 3.7684 3.7963 21 6 1.4191 4.4871 3.5774 22 6 1.9212 3.6047 0.0012 23 6 1.2915 2.3751 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0208 0.3798 -0.0014 28 1 5.1346 2.5748 0.0103 29 1 4.8756 4.9730 -0.6282 30 1 3.3040 5.7738 -0.3895 31 1 6.0151 6.4325 0.6030 32 1 4.6793 7.4423 1.2065 33 1 7.4932 9.4254 2.3142 34 1 3.4399 6.3022 3.0076 35 1 2.3873 6.0140 1.6014 36 1 2.5853 3.5407 2.0332 37 1 3.5174 2.7838 4.1676 38 1 4.7594 3.6992 3.2803 39 1 3.8895 4.4609 4.6334 40 1 0.6583 4.8481 2.8853 41 1 1.0938 3.5427 4.0139 42 1 1.5678 5.2214 4.3691 43 1 1.3343 4.5114 0.0019 44 1 0.2129 2.3202 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068817396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:35 Heat of formation + Delta-G solvation = -34.394142 kcal Electronic energy + Delta-G solvation = -22355.837375 eV Core-core repulsion = 19272.560686 eV Total energy + Delta-G solvation = -3083.276689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19146 -39.53478 -37.69013 -35.54689 -34.48153 -32.11256 -31.70681 -29.09941 -28.19804 -27.83445 -27.09925 -25.30621 -23.48325 -22.77410 -21.63896 -20.75448 -18.99836 -18.44581 -17.24562 -16.82569 -16.56760 -16.36966 -16.10834 -15.78131 -15.30773 -14.95539 -14.75276 -14.49353 -14.32055 -14.21913 -13.73653 -13.59245 -13.24494 -13.08198 -12.91430 -12.83576 -12.72876 -12.64834 -12.34963 -12.25759 -12.03598 -11.79131 -11.70462 -11.55211 -11.38964 -11.26177 -10.98307 -10.58227 -9.82174 -8.97950 -8.85914 -8.15986 -6.24688 0.48886 0.51948 1.40037 1.41337 1.54470 2.41772 2.46032 2.82695 3.16022 3.48124 3.90337 3.98228 4.07212 4.13097 4.23537 4.32972 4.43073 4.45779 4.50497 4.54342 4.65962 4.69815 4.76667 4.80559 4.86687 4.90646 4.96070 5.01647 5.13969 5.14958 5.19915 5.25910 5.28549 5.37474 5.40485 5.47268 5.63578 5.71375 5.74936 5.83542 5.88237 6.13852 6.44449 6.53722 6.70844 6.93498 7.44678 8.94266 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.004465 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.672589 B = 6269.926545 C = 6574.102370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.160 4.160 5 C -0.067 4.067 6 C -0.105 4.105 7 C 0.094 3.906 8 N -0.528 5.528 9 C 0.207 3.793 10 C -0.509 4.509 11 H 0.064 0.936 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.074 3.926 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.073 4.073 23 C -0.203 4.203 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.002 0.998 32 H -0.036 1.036 33 H 0.262 0.738 34 H 0.045 0.955 35 H 0.027 0.973 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.127 0.873 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -15.155 -3.296 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.106 4.106 7 C -0.033 4.033 8 N -0.251 5.251 9 C 0.081 3.919 10 C -0.548 4.548 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.578 5.578 14 Si 0.786 3.214 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.054 4.054 19 C -0.112 4.112 20 C -0.185 4.185 21 C -0.197 4.197 22 C -0.091 4.091 23 C -0.222 4.222 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.020 0.980 32 H -0.018 1.018 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.145 0.855 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.358 -15.571 -3.125 21.410 hybrid contribution 0.282 1.589 0.287 1.639 sum -14.076 -13.982 -2.838 20.042 Atomic orbital electron populations 1.23316 0.76666 1.05410 1.02184 1.86033 1.23300 1.26764 1.88836 1.19094 0.92339 0.84632 0.96940 1.20512 0.91932 0.98460 1.06959 1.20845 1.00094 0.90984 0.96631 1.19609 0.93789 0.94369 1.02853 1.21036 0.98291 0.93251 0.90764 1.62031 1.16184 1.38193 1.08727 1.19425 0.90453 0.85651 0.96372 1.21501 1.27047 1.05770 1.00441 0.91764 1.25834 0.97621 0.95364 1.00751 1.70090 1.40015 1.11383 1.36268 0.85452 0.78143 0.78100 0.79675 1.18867 1.20540 1.20611 1.22027 0.90159 0.97232 0.95963 1.21347 0.94695 0.96825 0.98318 1.21595 0.99352 0.99310 0.98241 1.21763 0.96336 1.01634 0.99933 1.20893 0.93419 0.97796 0.97030 1.21312 1.00877 0.91355 1.08615 0.91924 0.91753 0.86415 0.84629 0.85743 0.91395 0.95119 0.98017 1.01843 0.92903 0.93609 0.95491 0.89438 0.92872 0.93589 0.94746 0.92250 0.91733 0.93592 0.85469 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.27 10.50 -92.38 -0.97 -8.24 16 3 C 0.12 2.79 6.69 22.51 0.15 2.94 16 4 C -0.16 -4.18 9.99 22.37 0.22 -3.95 16 5 C -0.07 -1.94 9.67 22.25 0.22 -1.73 16 6 C -0.11 -3.18 3.47 -19.85 -0.07 -3.25 16 7 C 0.09 3.40 5.01 85.56 0.43 3.83 16 8 N -0.53 -22.50 3.79 -905.35 -3.43 -25.93 16 9 C 0.21 11.02 4.67 85.55 0.40 11.42 16 10 C -0.51 -28.84 8.32 25.60 0.21 -28.63 16 11 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.94 -56.71 13.29 21.45 0.28 -56.42 16 14 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 15 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 C 0.07 2.89 3.93 86.30 0.34 3.23 16 19 C -0.09 -3.00 2.62 -10.80 -0.03 -3.03 16 20 C -0.13 -4.44 9.14 71.98 0.66 -3.78 16 21 C -0.14 -3.64 9.19 71.98 0.66 -2.98 16 22 C -0.07 -1.86 7.30 22.25 0.16 -1.70 16 23 C -0.20 -4.50 8.95 22.37 0.20 -4.30 16 24 H 0.06 0.70 7.66 -2.38 -0.02 0.69 16 25 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 26 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.07 2.51 7.83 -2.39 -0.02 2.49 16 30 H 0.03 1.09 7.76 -2.39 -0.02 1.07 16 31 H 0.00 0.10 7.80 -2.39 -0.02 0.08 16 32 H -0.04 -2.11 8.05 -2.39 -0.02 -2.13 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.05 2.06 7.04 -2.38 -0.02 2.04 16 35 H 0.03 0.98 7.64 -2.39 -0.02 0.96 16 36 H 0.09 2.74 3.84 -2.39 -0.01 2.73 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.83 7.66 -2.39 -0.02 1.81 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.13 3.01 8.05 -2.91 -0.02 2.98 16 44 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 Total: -1.00 -64.92 351.03 3.99 -60.93 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.95 Total: 12.73 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 5.13 Total: -30.02 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.15 Total: -82.36 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.97 Total: -8.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.92 3.99 -60.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068817396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.538 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds