Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 N 1.46903 * 109.47175 * 183.76793 * 3 2 1 5 5 C 1.46900 * 111.00109 * 299.10533 * 4 3 2 6 6 C 1.53000 * 109.47032 * 288.37405 * 5 4 3 7 7 C 1.53004 * 109.47225 * 180.48663 * 6 5 4 8 8 C 1.50699 * 109.47223 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99948 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99650 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99567 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46784 * 90.00228 * 12 10 8 14 14 H 1.48503 * 109.46955 * 209.99979 * 12 10 8 15 15 H 1.48500 * 109.47320 * 329.99788 * 12 10 8 16 16 C 1.46905 * 110.99844 * 63.05792 * 4 3 2 17 17 C 1.50703 * 109.47121 * 66.04328 * 16 4 3 18 18 C 1.38166 * 120.02715 * 260.00420 * 17 16 4 19 19 C 1.38249 * 120.05353 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11014 * 359.97438 * 19 18 17 21 21 C 1.38129 * 120.05881 * 0.02562 * 20 19 18 22 22 C 1.38710 * 120.02581 * 79.95669 * 17 16 4 23 23 O 1.35904 * 120.05583 * 0.04360 * 22 17 16 24 24 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47017 * 300.00168 * 1 2 3 26 26 H 1.09006 * 109.46957 * 59.99810 * 1 2 3 27 27 H 1.08999 * 109.47017 * 239.99832 * 2 1 3 28 28 H 1.09005 * 109.47220 * 120.00672 * 2 1 3 29 29 H 1.08999 * 109.46607 * 63.77526 * 3 2 1 30 30 H 1.08991 * 109.47263 * 303.77158 * 3 2 1 31 31 H 1.08998 * 109.47191 * 48.37541 * 5 4 3 32 32 H 1.09004 * 109.46845 * 168.38061 * 5 4 3 33 33 H 1.08998 * 109.47024 * 300.48665 * 6 5 4 34 34 H 1.08996 * 109.47376 * 60.48729 * 6 5 4 35 35 H 1.09006 * 109.46667 * 300.00343 * 7 6 5 36 36 H 1.08996 * 109.46890 * 59.99768 * 7 6 5 37 37 H 0.97008 * 120.00136 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.46540 * 306.04802 * 16 4 3 39 39 H 1.08991 * 109.47061 * 186.04830 * 16 4 3 40 40 H 1.07995 * 119.97198 * 359.97438 * 18 17 16 41 41 H 1.07992 * 119.94510 * 179.97438 * 19 18 17 42 42 H 1.08004 * 119.97194 * 180.02562 * 20 19 18 43 43 H 1.07992 * 120.02641 * 179.72603 * 21 20 19 44 44 H 0.96698 * 114.00246 * 269.95538 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5062 1.4434 -0.0910 5 6 4.1054 0.7506 1.0574 6 6 3.9406 1.6086 2.3134 7 6 4.5755 0.8926 3.5072 8 6 4.4126 1.7374 4.7444 9 1 3.9072 2.6901 4.6851 10 6 4.9087 1.2942 5.9520 11 7 5.5236 0.1339 6.0243 12 14 4.7075 2.3418 7.4855 13 1 3.4334 1.9892 8.1621 14 1 5.8437 2.0918 8.4084 15 1 4.6853 3.7771 7.1051 16 6 3.9554 0.8493 -1.3572 17 6 3.5244 1.7263 -2.5045 18 6 2.4035 1.3979 -3.2426 19 6 2.0072 2.2023 -4.2948 20 6 2.7309 3.3375 -4.6110 21 6 3.8522 3.6701 -3.8761 22 6 4.2520 2.8644 -2.8197 23 8 5.3548 3.1895 -2.0951 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 1.7329 1.9363 0.9219 30 1 1.6226 1.9754 -0.8542 31 1 3.6072 -0.2077 1.2041 32 1 5.1659 0.5836 0.8681 33 1 4.4316 2.5702 2.1635 34 1 2.8801 1.7685 2.5076 35 1 4.0845 -0.0691 3.6570 36 1 5.6360 0.7327 3.3130 37 1 5.8730 -0.1777 6.8739 38 1 3.5138 -0.1408 -1.4708 39 1 5.0420 0.7641 -1.3533 40 1 1.8364 0.5121 -2.9973 41 1 1.1311 1.9437 -4.8708 42 1 2.4191 3.9645 -5.4332 43 1 4.4195 4.5543 -4.1263 44 1 5.1722 3.7578 -1.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068973550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = -35.176109 kcal Electronic energy + Delta-G solvation = -21651.861466 eV Core-core repulsion = 18568.550868 eV Total energy + Delta-G solvation = -3083.310598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10656 -38.02458 -36.54963 -33.94459 -32.94081 -32.08014 -30.53767 -29.74772 -26.74862 -26.60672 -24.15951 -22.73457 -22.56563 -21.79956 -20.36668 -19.26570 -18.19155 -16.39319 -16.16483 -16.03942 -15.83339 -15.06010 -14.97413 -14.55338 -14.34965 -13.96099 -13.77639 -13.31892 -13.20685 -12.62009 -12.30879 -12.14648 -12.04800 -11.90243 -11.58042 -11.47206 -11.38028 -11.23258 -11.16915 -10.83101 -10.56173 -10.48687 -10.38476 -10.32279 -9.54315 -9.31777 -9.05112 -8.95795 -8.61743 -8.31654 -7.96322 -5.97039 -3.98898 1.17821 1.21736 3.33640 3.39827 3.43472 3.50365 4.25469 4.35410 4.49715 4.71380 4.76538 4.91743 5.02717 5.03976 5.17129 5.34926 5.38836 5.40411 5.44631 5.57095 5.62545 5.74559 5.81577 5.85297 5.90573 5.98390 5.99941 6.09480 6.21941 6.27331 6.34672 6.39627 6.41170 6.49339 6.73110 6.73985 6.82512 7.16858 7.37496 7.42858 7.71991 7.75093 7.87456 8.03822 8.47274 9.08439 9.64973 11.14390 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.003677 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.054816 B = 7613.155993 C = 8297.376155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.052 3.948 4 N -0.530 5.530 5 C 0.051 3.949 6 C -0.100 4.100 7 C 0.022 3.978 8 C -0.517 4.517 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.090 3.910 17 C -0.096 4.096 18 C -0.100 4.100 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.151 4.151 22 C 0.130 3.870 23 O -0.496 6.496 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 3.090 -20.715 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.076 4.076 4 N -0.252 5.252 5 C -0.076 4.076 6 C -0.138 4.138 7 C -0.016 4.016 8 C -0.555 4.555 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.038 4.038 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.170 4.170 22 C 0.085 3.915 23 O -0.307 6.307 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.296 3.126 -20.972 22.424 hybrid contribution -0.596 -0.090 1.249 1.387 sum -7.892 3.036 -19.723 21.459 Atomic orbital electron populations 1.21657 0.95635 1.01333 1.01686 1.22197 0.96497 0.99575 1.02238 1.22262 0.87600 0.95163 1.02621 1.62315 1.07198 1.54500 1.01220 1.22380 0.98721 0.96053 0.90411 1.21593 1.00306 0.98706 0.93240 1.19070 0.95793 0.95495 0.91208 1.21249 1.36392 1.04682 0.93211 0.92733 1.25024 0.95339 0.95111 0.99038 1.69967 1.38523 1.19526 1.25605 0.86616 0.77600 0.80817 0.83100 1.20741 1.21261 1.19857 1.21008 1.01051 0.94169 0.87547 1.20182 0.95066 0.97074 0.97419 1.20995 0.95817 0.99722 0.95322 1.21084 1.00410 0.95612 0.98150 1.20980 0.95099 0.97154 0.99489 1.21436 0.97658 1.00373 0.97527 1.18285 0.87120 0.93289 0.92787 1.84703 1.29242 1.72271 1.44472 0.93078 0.92492 0.93086 0.92299 0.91095 0.90224 0.91279 0.94594 0.91394 0.92775 0.93612 0.96928 0.96663 0.93074 0.93871 0.89573 0.86070 0.86130 0.86014 0.85671 0.74499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.17 -2.04 5.28 -26.73 -0.14 -2.18 16 3 C 0.05 0.69 4.95 -3.82 -0.02 0.67 16 4 N -0.53 -7.61 4.66 -236.07 -1.10 -8.71 16 5 C 0.05 0.87 4.81 -3.82 -0.02 0.85 16 6 C -0.10 -2.06 5.18 -26.73 -0.14 -2.20 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.09 1.17 4.56 -4.97 -0.02 1.14 16 17 C -0.10 -1.17 4.59 -104.47 -0.48 -1.65 16 18 C -0.10 -1.05 8.64 -39.60 -0.34 -1.40 16 19 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 20 C -0.11 -1.02 10.04 -39.60 -0.40 -1.41 16 21 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 22 C 0.13 1.60 6.68 -39.22 -0.26 1.34 16 23 O -0.50 -6.25 12.74 -19.44 -0.25 -6.49 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 5.96 -51.93 -0.31 0.37 16 28 H 0.07 1.01 6.38 -51.93 -0.33 0.68 16 29 H 0.08 1.17 6.66 -51.93 -0.35 0.82 16 30 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 31 H 0.04 0.62 5.88 -51.93 -0.31 0.31 16 32 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.04 0.54 5.89 -51.93 -0.31 0.23 16 39 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 40 H 0.12 1.14 7.83 -52.49 -0.41 0.73 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.40 4.03 9.06 45.56 0.41 4.45 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -30.85 351.13 -9.56 -40.42 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.43 Total: 1.93 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.79 Total: -22.80 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.36 Total: -35.16 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.25 Total: -6.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.85 -9.56 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068973550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.241 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds