Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 N 1.46903 * 109.47175 * 183.76793 * 3 2 1 5 5 C 1.46900 * 111.00109 * 299.10533 * 4 3 2 6 6 C 1.53000 * 109.47032 * 288.37405 * 5 4 3 7 7 C 1.53004 * 109.47225 * 180.48663 * 6 5 4 8 8 C 1.50699 * 109.47223 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99948 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99650 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99567 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46784 * 90.00228 * 12 10 8 14 14 H 1.48503 * 109.46955 * 209.99979 * 12 10 8 15 15 H 1.48500 * 109.47320 * 329.99788 * 12 10 8 16 16 C 1.46905 * 110.99844 * 63.05792 * 4 3 2 17 17 C 1.50703 * 109.47121 * 66.04328 * 16 4 3 18 18 C 1.38166 * 120.02715 * 260.00420 * 17 16 4 19 19 C 1.38249 * 120.05353 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11014 * 359.97438 * 19 18 17 21 21 C 1.38129 * 120.05881 * 0.02562 * 20 19 18 22 22 C 1.38710 * 120.02581 * 79.95669 * 17 16 4 23 23 O 1.35904 * 120.05583 * 0.04360 * 22 17 16 24 24 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47017 * 300.00168 * 1 2 3 26 26 H 1.09006 * 109.46957 * 59.99810 * 1 2 3 27 27 H 1.08999 * 109.47017 * 239.99832 * 2 1 3 28 28 H 1.09005 * 109.47220 * 120.00672 * 2 1 3 29 29 H 1.08999 * 109.46607 * 63.77526 * 3 2 1 30 30 H 1.08991 * 109.47263 * 303.77158 * 3 2 1 31 31 H 1.08998 * 109.47191 * 48.37541 * 5 4 3 32 32 H 1.09004 * 109.46845 * 168.38061 * 5 4 3 33 33 H 1.08998 * 109.47024 * 300.48665 * 6 5 4 34 34 H 1.08996 * 109.47376 * 60.48729 * 6 5 4 35 35 H 1.09006 * 109.46667 * 300.00343 * 7 6 5 36 36 H 1.08996 * 109.46890 * 59.99768 * 7 6 5 37 37 H 0.97008 * 120.00136 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.46540 * 306.04802 * 16 4 3 39 39 H 1.08991 * 109.47061 * 186.04830 * 16 4 3 40 40 H 1.07995 * 119.97198 * 359.97438 * 18 17 16 41 41 H 1.07992 * 119.94510 * 179.97438 * 19 18 17 42 42 H 1.08004 * 119.97194 * 180.02562 * 20 19 18 43 43 H 1.07992 * 120.02641 * 179.72603 * 21 20 19 44 44 H 0.96698 * 114.00246 * 269.95538 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5062 1.4434 -0.0910 5 6 4.1054 0.7506 1.0574 6 6 3.9406 1.6086 2.3134 7 6 4.5755 0.8926 3.5072 8 6 4.4126 1.7374 4.7444 9 1 3.9072 2.6901 4.6851 10 6 4.9087 1.2942 5.9520 11 7 5.5236 0.1339 6.0243 12 14 4.7075 2.3418 7.4855 13 1 3.4334 1.9892 8.1621 14 1 5.8437 2.0918 8.4084 15 1 4.6853 3.7771 7.1051 16 6 3.9554 0.8493 -1.3572 17 6 3.5244 1.7263 -2.5045 18 6 2.4035 1.3979 -3.2426 19 6 2.0072 2.2023 -4.2948 20 6 2.7309 3.3375 -4.6110 21 6 3.8522 3.6701 -3.8761 22 6 4.2520 2.8644 -2.8197 23 8 5.3548 3.1895 -2.0951 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 1.7329 1.9363 0.9219 30 1 1.6226 1.9754 -0.8542 31 1 3.6072 -0.2077 1.2041 32 1 5.1659 0.5836 0.8681 33 1 4.4316 2.5702 2.1635 34 1 2.8801 1.7685 2.5076 35 1 4.0845 -0.0691 3.6570 36 1 5.6360 0.7327 3.3130 37 1 5.8730 -0.1777 6.8739 38 1 3.5138 -0.1408 -1.4708 39 1 5.0420 0.7641 -1.3533 40 1 1.8364 0.5121 -2.9973 41 1 1.1311 1.9437 -4.8708 42 1 2.4191 3.9645 -5.4332 43 1 4.4195 4.5543 -4.1263 44 1 5.1722 3.7578 -1.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068973550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = -54.305759 kcal Electronic energy + Delta-G solvation = -21652.690990 eV Core-core repulsion = 18568.550868 eV Total energy + Delta-G solvation = -3084.140122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99964 -39.16000 -37.41230 -35.85490 -34.04189 -33.64811 -31.81913 -30.62478 -28.48319 -27.58979 -25.68255 -23.95435 -23.44697 -22.99906 -21.77584 -20.57533 -19.05937 -18.46241 -17.10916 -17.06429 -16.96320 -16.52051 -16.07290 -15.94965 -15.48733 -15.13078 -14.76544 -14.65882 -14.37094 -14.09612 -13.59603 -13.39746 -13.18320 -12.94486 -12.88883 -12.78500 -12.62173 -12.52963 -12.41444 -12.26665 -12.14310 -12.10972 -11.69047 -11.38023 -11.29339 -11.14533 -11.02983 -10.54163 -9.78201 -9.45132 -9.13029 -8.19421 -6.30307 0.37081 0.43040 1.39859 1.41369 1.52675 2.41165 2.67974 3.13666 3.15671 3.50415 3.80045 3.91530 4.00051 4.08032 4.23596 4.25865 4.32947 4.40257 4.41628 4.53551 4.63547 4.66656 4.74972 4.79387 4.85614 4.98740 5.01088 5.03951 5.08174 5.12363 5.17631 5.26587 5.29085 5.41862 5.48774 5.54088 5.60591 5.64428 5.76539 5.87437 5.98091 6.11329 6.21353 6.29059 6.86656 6.90898 7.38851 8.92492 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.003677 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.054816 B = 7613.155993 C = 8297.376155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C 0.056 3.944 4 N -0.530 5.530 5 C 0.064 3.936 6 C -0.083 4.083 7 C 0.027 3.973 8 C -0.541 4.541 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.097 3.903 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.132 4.132 20 C -0.106 4.106 21 C -0.160 4.160 22 C 0.108 3.892 23 O -0.511 6.511 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.047 0.953 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.135 0.865 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 4.176 -22.107 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C -0.072 4.072 4 N -0.253 5.253 5 C -0.063 4.063 6 C -0.121 4.121 7 C -0.011 4.011 8 C -0.579 4.579 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.187 1.187 16 C -0.031 4.031 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.150 4.150 20 C -0.124 4.124 21 C -0.178 4.178 22 C 0.063 3.937 23 O -0.323 6.323 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.153 0.847 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -9.037 4.221 -22.383 24.505 hybrid contribution -0.066 -0.432 1.602 1.660 sum -9.103 3.789 -20.781 23.002 Atomic orbital electron populations 1.21633 0.94051 1.02055 1.02201 1.22129 0.97868 0.98500 1.01503 1.22241 0.86713 0.95902 1.02352 1.62210 1.07999 1.54193 1.00868 1.22062 0.98639 0.95363 0.90251 1.21312 0.99587 0.98348 0.92843 1.18961 0.94338 0.94742 0.93043 1.21680 1.36562 1.05162 0.94450 0.92325 1.25985 0.94773 0.96412 1.02717 1.70101 1.39345 1.21309 1.26697 0.85458 0.77866 0.79257 0.78541 1.19732 1.20728 1.18719 1.20910 1.00174 0.94824 0.87144 1.20136 0.96291 0.97296 0.97714 1.21178 0.95214 1.00343 0.95467 1.21436 1.00986 0.95011 0.97574 1.21354 0.94143 0.97296 0.99568 1.21641 0.98369 1.00608 0.97208 1.18557 0.87445 0.94054 0.93652 1.84680 1.30058 1.72596 1.44959 0.92285 0.93192 0.91342 0.91289 0.93520 0.91821 0.89871 0.94841 0.92082 0.93057 0.93443 0.99310 0.99185 0.92806 0.93170 0.91097 0.84905 0.83371 0.83257 0.84663 0.73879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.16 -3.81 5.28 30.59 0.16 -3.65 16 3 C 0.06 1.44 4.95 86.30 0.43 1.87 16 4 N -0.53 -15.25 4.66 -900.79 -4.20 -19.45 16 5 C 0.06 2.27 4.81 86.30 0.42 2.68 16 6 C -0.08 -3.51 5.18 30.60 0.16 -3.35 16 7 C 0.03 1.45 4.97 29.85 0.15 1.59 16 8 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 10 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 11 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 12 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 16 C 0.10 2.49 4.56 85.56 0.39 2.88 16 17 C -0.11 -2.63 4.59 -19.77 -0.09 -2.72 16 18 C -0.10 -1.93 8.64 22.26 0.19 -1.74 16 19 C -0.13 -2.02 10.04 22.28 0.22 -1.80 16 20 C -0.11 -1.64 10.04 22.25 0.22 -1.42 16 21 C -0.16 -3.12 9.99 22.37 0.22 -2.90 16 22 C 0.11 2.58 6.68 22.51 0.15 2.73 16 23 O -0.51 -13.03 12.74 -92.47 -1.18 -14.21 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.49 5.96 -2.39 -0.01 1.47 16 28 H 0.05 1.33 6.38 -2.38 -0.02 1.32 16 29 H 0.06 1.85 6.66 -2.39 -0.02 1.84 16 30 H 0.08 1.94 6.47 -2.39 -0.02 1.93 16 31 H 0.03 1.19 5.88 -2.39 -0.01 1.18 16 32 H 0.06 2.22 7.82 -2.38 -0.02 2.20 16 33 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.98 6.75 -2.39 -0.02 1.96 16 35 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 38 H 0.05 1.21 5.89 -2.39 -0.01 1.20 16 39 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 40 H 0.13 2.11 7.83 -2.91 -0.02 2.09 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.40 8.44 9.06 -74.06 -0.67 7.77 16 Total: -1.00 -66.98 351.13 1.27 -65.71 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.30 Total: 17.21 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 4.03 Total: -38.68 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -3.91 Total: -76.96 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.18 Total: -14.21 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.98 1.27 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068973550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.406 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds