Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 N 1.46894 * 109.47068 * 185.40431 * 3 2 1 5 5 C 1.46899 * 111.00076 * 160.00214 * 4 3 2 6 6 C 1.53001 * 109.47449 * 288.00901 * 5 4 3 7 7 C 1.52996 * 109.47274 * 185.44279 * 6 5 4 8 8 C 1.46896 * 111.00187 * 283.96103 * 4 3 2 9 9 C 1.50703 * 109.47372 * 169.99887 * 8 4 3 10 10 C 1.38299 * 119.93129 * 269.72134 * 9 8 4 11 11 C 1.38102 * 120.06952 * 179.72489 * 10 9 8 12 12 C 1.38880 * 119.92556 * 0.56913 * 11 10 9 13 13 O 1.35757 * 120.06554 * 179.68163 * 12 11 10 14 14 C 1.34831 * 117.00041 * 184.62306 * 13 12 11 15 15 H 1.08007 * 119.99642 * 354.80744 * 14 13 12 16 16 C 1.38649 * 120.00121 * 174.81292 * 14 13 12 17 17 N 1.31560 * 119.99969 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47436 * 89.99812 * 18 16 14 20 20 H 1.48504 * 109.46786 * 209.99742 * 18 16 14 21 21 H 1.48494 * 109.46957 * 329.99585 * 18 16 14 22 22 C 1.38874 * 119.86564 * 359.71035 * 12 11 10 23 23 C 1.38103 * 119.93376 * 359.97438 * 22 12 11 24 24 H 1.08999 * 109.47600 * 59.99939 * 1 2 3 25 25 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47307 * 299.99755 * 1 2 3 27 27 H 1.09002 * 109.46851 * 240.00166 * 2 1 3 28 28 H 1.08997 * 109.47080 * 120.00025 * 2 1 3 29 29 H 1.08999 * 109.47100 * 65.40370 * 3 2 1 30 30 H 1.09000 * 109.47115 * 305.40321 * 3 2 1 31 31 H 1.08996 * 109.47013 * 48.00900 * 5 4 3 32 32 H 1.09003 * 109.47191 * 168.00746 * 5 4 3 33 33 H 1.09000 * 109.46849 * 305.44344 * 6 5 4 34 34 H 1.09001 * 109.47097 * 65.43631 * 6 5 4 35 35 H 1.09003 * 109.47111 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.46877 * 299.99494 * 7 6 5 37 37 H 1.09001 * 109.47160 * 59.99975 * 7 6 5 38 38 H 1.09003 * 109.47060 * 289.99721 * 8 4 3 39 39 H 1.09002 * 109.47495 * 49.99497 * 8 4 3 40 40 H 1.08002 * 119.96410 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.03582 * 180.27730 * 11 10 9 42 42 H 0.96996 * 120.00232 * 180.02562 * 17 16 14 43 43 H 1.08005 * 120.03635 * 179.97438 * 22 12 11 44 44 H 1.07996 * 119.96559 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4446 -0.1304 5 6 3.9876 2.7481 -0.6036 6 6 3.6214 2.9236 -2.0788 7 6 4.2420 4.2181 -2.6079 8 6 4.1452 1.0729 1.1374 9 6 5.6173 0.8463 0.9075 10 6 6.0780 -0.4152 0.5772 11 6 7.4257 -0.6248 0.3604 12 6 8.3200 0.4303 0.4859 13 8 9.6462 0.2260 0.2797 14 6 10.4693 1.2685 0.5110 15 1 10.0587 2.2351 0.7633 16 6 11.8428 1.0998 0.4247 17 7 12.3429 -0.0777 0.1178 18 14 12.9832 2.5439 0.7459 19 1 13.3294 2.5901 2.1892 20 1 14.2231 2.3832 -0.0556 21 1 12.3040 3.8065 0.3591 22 6 7.8549 1.6946 0.8234 23 6 6.5053 1.8992 1.0326 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7578 1.9276 0.9344 30 1 1.5998 1.9835 -0.8376 31 1 3.5251 3.5422 -0.0176 32 1 5.0706 2.7964 -0.4899 33 1 4.0025 2.0776 -2.6508 34 1 2.5373 2.9722 -2.1807 35 1 3.9807 4.3433 -3.6587 36 1 3.8608 5.0640 -2.0359 37 1 5.3262 4.1694 -2.5060 38 1 4.0100 1.8757 1.8622 39 1 3.6922 0.1581 1.5197 40 1 5.3826 -1.2363 0.4848 41 1 7.7843 -1.6092 0.0981 42 1 13.3038 -0.1959 0.0578 43 1 8.5480 2.5170 0.9222 44 1 6.1430 2.8823 1.2946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077012519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -18.312975 kcal Electronic energy + Delta-G solvation = -21402.942912 eV Core-core repulsion = 18320.363554 eV Total energy + Delta-G solvation = -3082.579357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.27394 -38.14230 -36.24099 -34.11591 -32.73839 -32.13526 -30.16241 -29.67571 -26.63336 -26.07525 -25.03022 -22.93437 -22.01613 -21.39166 -20.66266 -20.04707 -17.94791 -16.94741 -15.74719 -15.69428 -15.14692 -14.63737 -14.54818 -14.47109 -14.09275 -13.71649 -13.52526 -13.40717 -13.04821 -12.65675 -12.59835 -12.52305 -12.16824 -11.88224 -11.78741 -11.60887 -11.41160 -11.25924 -11.12879 -10.90049 -10.83678 -10.66883 -10.58872 -10.45629 -10.35689 -10.27222 -9.30574 -8.81354 -8.19662 -8.10242 -7.13502 -6.43277 -4.02062 2.25321 2.32525 3.13319 3.14251 3.18916 3.97877 4.01032 4.64643 4.84871 4.95936 4.99699 5.11708 5.12604 5.26933 5.29369 5.32583 5.37736 5.42851 5.52742 5.57026 5.62907 5.66461 5.74727 5.81517 5.88919 5.89798 5.91278 5.97322 6.09305 6.10890 6.21020 6.25597 6.30821 6.35392 6.46779 6.74589 6.93787 7.05929 7.22099 7.24230 7.33124 7.44421 7.48039 7.86802 8.01979 9.02514 9.73540 10.74929 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.003702 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.851560 B = 7560.675595 C = 8280.506338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.533 5.533 5 C 0.048 3.952 6 C -0.117 4.117 7 C -0.152 4.152 8 C 0.112 3.888 9 C -0.176 4.176 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.234 4.234 23 C -0.067 4.067 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.125 0.875 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 4.710 -0.485 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.257 5.257 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.209 4.209 8 C -0.015 4.015 9 C -0.178 4.178 10 C -0.071 4.071 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.253 4.253 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.255 4.062 -0.940 18.725 hybrid contribution 0.382 1.423 0.788 1.671 sum -17.872 5.485 -0.152 18.696 Atomic orbital electron populations 1.21743 0.96079 1.01543 1.01457 1.21510 0.94761 0.96719 1.02784 1.22186 0.88342 0.97038 0.99996 1.62054 1.04414 1.29551 1.29678 1.22264 1.01942 0.88702 0.95019 1.21494 0.99880 0.98159 0.95942 1.21741 1.01456 0.97286 1.00463 1.20828 0.91947 0.99563 0.89119 1.19079 0.93387 0.94213 1.11088 1.20438 0.93894 0.95863 0.96942 1.20214 0.92304 0.98018 1.10792 1.19391 0.85609 0.92818 0.91994 1.83984 1.11389 1.38578 1.74273 1.21312 0.86872 0.89312 1.49255 0.89141 1.25277 0.96395 0.98168 0.96678 1.70039 1.13178 1.22217 1.44407 0.85726 0.79294 0.79859 0.78639 1.19906 1.20263 1.19225 1.21109 0.95696 0.97811 1.10730 1.20580 0.92792 0.97003 0.98212 0.92879 0.92700 0.93097 0.91044 0.92124 0.95280 0.91094 0.95653 0.89374 0.91049 0.92768 0.92819 0.93196 0.92305 0.95255 0.90803 0.87144 0.86622 0.92051 0.85707 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.18 5.97 -26.73 -0.16 -1.34 16 3 C 0.05 0.56 4.83 -3.83 -0.02 0.54 16 4 N -0.53 -6.99 4.38 -236.08 -1.03 -8.03 16 5 C 0.05 0.63 4.80 -3.82 -0.02 0.61 16 6 C -0.12 -1.36 5.91 -26.73 -0.16 -1.52 16 7 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 8 C 0.11 1.57 4.94 -4.98 -0.02 1.54 16 9 C -0.18 -3.03 4.94 -104.57 -0.52 -3.55 16 10 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 11 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 12 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 13 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 14 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 15 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 18 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 23 C -0.07 -1.23 7.84 -39.61 -0.31 -1.54 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 29 H 0.03 0.31 7.99 -51.93 -0.42 -0.11 16 30 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 31 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 32 H 0.09 1.32 5.12 -51.93 -0.27 1.05 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.57 6.71 -51.93 -0.35 0.22 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.07 0.96 6.68 -51.93 -0.35 0.61 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.13 2.74 5.63 -52.48 -0.30 2.44 16 44 H 0.10 1.63 7.72 -52.49 -0.41 1.22 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -29.76 352.25 -8.90 -38.67 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.24 Total: 3.22 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -1.67 Total: -24.88 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.28 Total: -32.76 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.76 -8.90 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077012519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.353 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds