Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 N 1.46894 * 109.47068 * 185.40431 * 3 2 1 5 5 C 1.46899 * 111.00076 * 160.00214 * 4 3 2 6 6 C 1.53001 * 109.47449 * 288.00901 * 5 4 3 7 7 C 1.52996 * 109.47274 * 185.44279 * 6 5 4 8 8 C 1.46896 * 111.00187 * 283.96103 * 4 3 2 9 9 C 1.50703 * 109.47372 * 169.99887 * 8 4 3 10 10 C 1.38299 * 119.93129 * 269.72134 * 9 8 4 11 11 C 1.38102 * 120.06952 * 179.72489 * 10 9 8 12 12 C 1.38880 * 119.92556 * 0.56913 * 11 10 9 13 13 O 1.35757 * 120.06554 * 179.68163 * 12 11 10 14 14 C 1.34831 * 117.00041 * 184.62306 * 13 12 11 15 15 H 1.08007 * 119.99642 * 354.80744 * 14 13 12 16 16 C 1.38649 * 120.00121 * 174.81292 * 14 13 12 17 17 N 1.31560 * 119.99969 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47436 * 89.99812 * 18 16 14 20 20 H 1.48504 * 109.46786 * 209.99742 * 18 16 14 21 21 H 1.48494 * 109.46957 * 329.99585 * 18 16 14 22 22 C 1.38874 * 119.86564 * 359.71035 * 12 11 10 23 23 C 1.38103 * 119.93376 * 359.97438 * 22 12 11 24 24 H 1.08999 * 109.47600 * 59.99939 * 1 2 3 25 25 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47307 * 299.99755 * 1 2 3 27 27 H 1.09002 * 109.46851 * 240.00166 * 2 1 3 28 28 H 1.08997 * 109.47080 * 120.00025 * 2 1 3 29 29 H 1.08999 * 109.47100 * 65.40370 * 3 2 1 30 30 H 1.09000 * 109.47115 * 305.40321 * 3 2 1 31 31 H 1.08996 * 109.47013 * 48.00900 * 5 4 3 32 32 H 1.09003 * 109.47191 * 168.00746 * 5 4 3 33 33 H 1.09000 * 109.46849 * 305.44344 * 6 5 4 34 34 H 1.09001 * 109.47097 * 65.43631 * 6 5 4 35 35 H 1.09003 * 109.47111 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.46877 * 299.99494 * 7 6 5 37 37 H 1.09001 * 109.47160 * 59.99975 * 7 6 5 38 38 H 1.09003 * 109.47060 * 289.99721 * 8 4 3 39 39 H 1.09002 * 109.47495 * 49.99497 * 8 4 3 40 40 H 1.08002 * 119.96410 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.03582 * 180.27730 * 11 10 9 42 42 H 0.96996 * 120.00232 * 180.02562 * 17 16 14 43 43 H 1.08005 * 120.03635 * 179.97438 * 22 12 11 44 44 H 1.07996 * 119.96559 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4446 -0.1304 5 6 3.9876 2.7481 -0.6036 6 6 3.6214 2.9236 -2.0788 7 6 4.2420 4.2181 -2.6079 8 6 4.1452 1.0729 1.1374 9 6 5.6173 0.8463 0.9075 10 6 6.0780 -0.4152 0.5772 11 6 7.4257 -0.6248 0.3604 12 6 8.3200 0.4303 0.4859 13 8 9.6462 0.2260 0.2797 14 6 10.4693 1.2685 0.5110 15 1 10.0587 2.2351 0.7633 16 6 11.8428 1.0998 0.4247 17 7 12.3429 -0.0777 0.1178 18 14 12.9832 2.5439 0.7459 19 1 13.3294 2.5901 2.1892 20 1 14.2231 2.3832 -0.0556 21 1 12.3040 3.8065 0.3591 22 6 7.8549 1.6946 0.8234 23 6 6.5053 1.8992 1.0326 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7578 1.9276 0.9344 30 1 1.5998 1.9835 -0.8376 31 1 3.5251 3.5422 -0.0176 32 1 5.0706 2.7964 -0.4899 33 1 4.0025 2.0776 -2.6508 34 1 2.5373 2.9722 -2.1807 35 1 3.9807 4.3433 -3.6587 36 1 3.8608 5.0640 -2.0359 37 1 5.3262 4.1694 -2.5060 38 1 4.0100 1.8757 1.8622 39 1 3.6922 0.1581 1.5197 40 1 5.3826 -1.2363 0.4848 41 1 7.7843 -1.6092 0.0981 42 1 13.3038 -0.1959 0.0578 43 1 8.5480 2.5170 0.9222 44 1 6.1430 2.8823 1.2946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077012519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -35.057218 kcal Electronic energy + Delta-G solvation = -21403.668996 eV Core-core repulsion = 18320.363554 eV Total energy + Delta-G solvation = -3083.305442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88560 -39.47381 -37.81327 -34.94446 -34.38319 -33.52271 -31.79760 -31.06788 -27.73035 -27.50359 -26.59375 -23.99694 -23.64232 -22.30563 -22.00250 -21.19147 -19.82310 -18.81114 -16.93508 -16.66969 -16.46133 -16.30111 -15.85539 -15.57270 -15.52270 -15.33311 -15.10037 -14.48647 -14.29514 -14.09593 -13.84872 -13.70650 -13.46271 -12.99832 -12.94858 -12.85965 -12.65988 -12.40420 -12.33461 -12.28816 -12.13536 -12.08504 -11.78122 -11.69839 -11.42944 -11.25009 -11.13588 -10.78345 -9.74291 -9.20579 -8.86417 -8.46764 -6.14866 0.61137 0.69606 1.34533 1.43970 1.52093 2.17853 2.74954 3.04220 3.31144 3.53736 3.95373 4.00197 4.04487 4.15021 4.19998 4.21004 4.35733 4.45271 4.49520 4.57433 4.59142 4.64019 4.71121 4.75611 4.81485 4.83467 4.92758 4.98969 5.03745 5.10409 5.15667 5.20529 5.27814 5.31515 5.34464 5.37819 5.43243 5.51146 5.59851 5.72224 5.82568 6.03598 6.18890 6.24959 6.33002 6.98025 7.79648 8.76728 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.003702 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.851560 B = 7560.675595 C = 8280.506338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.545 5.545 5 C 0.048 3.952 6 C -0.112 4.112 7 C -0.150 4.150 8 C 0.115 3.885 9 C -0.151 4.151 10 C -0.048 4.048 11 C -0.206 4.206 12 C 0.115 3.885 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.101 0.899 16 C -0.023 4.023 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.242 4.242 23 C -0.062 4.062 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.927 6.459 0.174 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.080 4.080 6 C -0.150 4.150 7 C -0.208 4.208 8 C -0.012 4.012 9 C -0.152 4.152 10 C -0.066 4.066 11 C -0.225 4.225 12 C 0.064 3.936 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.177 1.177 22 C -0.261 4.261 23 C -0.080 4.080 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.503 5.818 -0.277 22.278 hybrid contribution 0.974 0.849 0.588 1.419 sum -20.529 6.667 0.311 21.587 Atomic orbital electron populations 1.21707 0.94629 1.02102 1.02007 1.21487 0.96010 0.95956 1.02108 1.22238 0.86455 0.97794 1.00771 1.62006 1.06035 1.29826 1.29008 1.22251 1.00555 0.89141 0.96024 1.21446 1.00829 0.97841 0.94889 1.21726 1.00351 0.97291 1.01395 1.20833 0.89293 1.01055 0.90039 1.19581 0.95508 0.93166 1.06945 1.20807 0.92778 0.97510 0.95503 1.20455 0.93539 0.97398 1.11098 1.19914 0.84803 0.94811 0.94040 1.83946 1.13302 1.39537 1.77242 1.21808 0.87639 0.89861 1.49602 0.88205 1.26586 0.97843 1.01482 0.96148 1.70186 1.13653 1.25010 1.47151 0.84595 0.76665 0.76103 0.78903 1.18791 1.19554 1.17653 1.21195 0.97291 0.96625 1.11000 1.20885 0.91297 0.98858 0.96988 0.92430 0.92216 0.92445 0.92215 0.92297 0.94394 0.90314 0.94319 0.91709 0.92891 0.91146 0.91771 0.91972 0.93928 0.93905 0.89143 0.83897 0.87074 0.91852 0.86528 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.92 5.97 30.59 0.18 -1.73 16 3 C 0.05 0.96 4.83 86.30 0.42 1.38 16 4 N -0.54 -12.41 4.38 -900.81 -3.95 -16.35 16 5 C 0.05 1.10 4.80 86.30 0.41 1.52 16 6 C -0.11 -2.34 5.91 30.59 0.18 -2.16 16 7 C -0.15 -2.89 9.91 71.98 0.71 -2.17 16 8 C 0.11 2.75 4.94 85.56 0.42 3.17 16 9 C -0.15 -4.81 4.94 -19.83 -0.10 -4.91 16 10 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 11 C -0.21 -9.03 9.99 22.39 0.22 -8.81 16 12 C 0.11 5.84 6.65 22.58 0.15 5.99 16 13 O -0.23 -14.36 9.76 -22.82 -0.22 -14.58 16 14 C -0.41 -24.45 9.49 67.92 0.64 -23.80 16 15 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 16 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 17 N -0.92 -57.36 13.67 21.61 0.30 -57.06 16 18 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.24 -10.73 9.17 22.39 0.21 -10.53 16 23 C -0.06 -2.17 7.84 22.25 0.17 -1.99 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 29 H 0.04 0.63 7.99 -2.39 -0.02 0.61 16 30 H 0.08 1.29 6.32 -2.39 -0.02 1.27 16 31 H 0.04 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.06 1.79 5.12 -2.39 -0.01 1.78 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.24 6.71 -2.39 -0.02 1.23 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 39 H 0.09 1.94 6.68 -2.39 -0.02 1.92 16 40 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.12 5.27 5.63 -2.91 -0.02 5.26 16 44 H 0.13 3.83 7.72 -2.91 -0.02 3.81 16 Total: -1.00 -68.89 352.25 4.14 -64.75 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.96 Total: 25.35 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 5.03 Total: -47.49 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -3.65 Total: -73.42 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.89 4.14 -64.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077012519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds