Wall clock time and date at job start Mon Mar 30 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.52997 * 109.47481 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47523 * 185.32824 * 4 3 2 6 6 C 1.46896 * 111.00099 * 169.90335 * 5 4 3 7 7 C 1.52999 * 109.47654 * 288.76352 * 6 5 4 8 8 C 1.46903 * 111.00267 * 293.86051 * 5 4 3 9 9 C 1.50694 * 109.47507 * 169.99843 * 8 5 4 10 10 C 1.38303 * 119.93042 * 89.99940 * 9 8 5 11 11 C 1.38103 * 120.06523 * 179.97438 * 10 9 8 12 12 C 1.38877 * 119.93278 * 0.02562 * 11 10 9 13 13 O 1.35748 * 120.06753 * 180.02562 * 12 11 10 14 14 C 1.34834 * 117.00423 * 5.84858 * 13 12 11 15 15 H 1.08004 * 119.99644 * 354.91205 * 14 13 12 16 16 C 1.38652 * 120.00401 * 174.91561 * 14 13 12 17 17 N 1.31562 * 119.99997 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00008 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47283 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47206 * 119.99903 * 18 16 14 21 21 H 1.48496 * 109.46918 * 239.99778 * 18 16 14 22 22 C 1.38877 * 119.86055 * 0.27183 * 12 11 10 23 23 C 1.38091 * 119.93350 * 359.44901 * 22 12 11 24 24 H 1.08991 * 109.47581 * 300.00010 * 1 2 3 25 25 H 1.08997 * 109.47237 * 60.00891 * 1 2 3 26 26 H 1.09008 * 109.46632 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47798 * 239.99851 * 2 1 3 28 28 H 1.09001 * 109.47220 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47491 * 59.99469 * 3 2 1 30 30 H 1.09001 * 109.47044 * 299.99980 * 3 2 1 31 31 H 1.09003 * 109.47040 * 65.32469 * 4 3 2 32 32 H 1.08998 * 109.47075 * 305.33356 * 4 3 2 33 33 H 1.09004 * 109.47044 * 48.76643 * 6 5 4 34 34 H 1.09000 * 109.47076 * 168.76311 * 6 5 4 35 35 H 1.08989 * 109.47414 * 185.16733 * 7 6 5 36 36 H 1.09000 * 109.46847 * 305.17067 * 7 6 5 37 37 H 1.09001 * 109.46513 * 65.16290 * 7 6 5 38 38 H 1.09003 * 109.46656 * 49.99378 * 8 5 4 39 39 H 1.09005 * 109.46650 * 290.00012 * 8 5 4 40 40 H 1.07998 * 119.96509 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.03060 * 179.97438 * 11 10 9 42 42 H 0.96994 * 120.00030 * 180.02562 * 17 16 14 43 43 H 1.08007 * 120.03062 * 179.73213 * 22 12 11 44 44 H 1.07998 * 119.97212 * 180.27263 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8216 0.1293 6 6 5.5078 2.8455 0.3735 7 6 5.7944 2.3449 1.7906 8 6 3.7124 3.6163 -1.0565 9 6 4.0073 5.0701 -0.7910 10 6 5.2535 5.5879 -1.0937 11 6 5.5266 6.9199 -0.8520 12 6 4.5486 7.7394 -0.3040 13 8 4.8139 9.0492 -0.0657 14 6 6.0021 9.5210 -0.4943 15 1 6.7262 8.8469 -0.9276 16 6 6.2943 10.8714 -0.3788 17 7 5.4121 11.6927 0.1486 18 14 7.9402 11.5250 -0.9732 19 1 8.7480 10.4064 -1.5221 20 1 7.7159 12.5408 -2.0330 21 1 8.6653 12.1474 0.1635 22 6 3.3002 7.2150 0.0046 23 6 3.0313 5.8836 -0.2447 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 1.0135 -0.9330 32 1 3.9329 0.8485 0.8392 33 1 6.0086 2.2000 -0.3481 34 1 5.8775 3.8653 0.2667 35 1 6.8581 2.4486 2.0044 36 1 5.2208 2.9333 2.5067 37 1 5.5083 1.2961 1.8702 38 1 2.6519 3.4951 -1.2774 39 1 4.3021 3.2754 -1.9076 40 1 6.0138 4.9499 -1.5196 41 1 6.5001 7.3235 -1.0883 42 1 5.6164 12.6374 0.2290 43 1 2.5389 7.8488 0.4350 44 1 2.0593 5.4762 -0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077012529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:28 Heat of formation + Delta-G solvation = -17.916059 kcal Electronic energy + Delta-G solvation = -21205.202034 eV Core-core repulsion = 18122.639888 eV Total energy + Delta-G solvation = -3082.562146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.26879 -38.13758 -36.29082 -34.75536 -32.33114 -31.23324 -30.31102 -29.95339 -27.77109 -25.59050 -24.42939 -23.45901 -21.91964 -21.20640 -20.91240 -19.97905 -17.94721 -16.94519 -15.94278 -15.47271 -15.26275 -14.92785 -14.53623 -14.32217 -13.97768 -13.57804 -13.53269 -13.49466 -13.21017 -12.79391 -12.66446 -12.48240 -12.24856 -11.82177 -11.69981 -11.56752 -11.39262 -11.28438 -11.13447 -10.99774 -10.87309 -10.70569 -10.61396 -10.43942 -10.37672 -10.31038 -9.30223 -8.81682 -8.19882 -8.10255 -7.13496 -6.43341 -4.02031 2.25343 2.32421 3.12755 3.14359 3.19877 3.97781 4.01074 4.61935 4.77452 4.85207 4.95581 5.11402 5.12559 5.17997 5.29503 5.32768 5.34883 5.46712 5.52447 5.59915 5.61218 5.65844 5.69251 5.76044 5.81089 5.83513 5.92893 5.95593 5.98498 6.14347 6.18239 6.23916 6.26426 6.31489 6.46735 6.74656 6.93766 7.06078 7.21187 7.24223 7.33108 7.44420 7.48084 7.86821 8.02060 9.02578 9.73688 10.74952 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031079 B = 0.003255 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.722209 B = 8600.353945 C = 9116.086191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.044 3.956 7 C -0.145 4.145 8 C 0.110 3.890 9 C -0.176 4.176 10 C -0.067 4.067 11 C -0.234 4.234 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.194 4.194 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.269 0.731 43 H 0.116 0.884 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -19.925 -1.007 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.075 4.075 5 N -0.256 5.256 6 C -0.084 4.084 7 C -0.202 4.202 8 C -0.017 4.017 9 C -0.178 4.178 10 C -0.086 4.086 11 C -0.253 4.253 12 C 0.102 3.898 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.213 4.213 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.787 -19.281 -0.441 19.655 hybrid contribution 1.336 -0.031 -1.013 1.677 sum -2.451 -19.313 -1.454 19.522 Atomic orbital electron populations 1.21760 0.95849 1.01330 1.01982 1.21490 0.95897 0.97014 1.01689 1.21648 0.94786 0.96266 1.02879 1.22154 0.95441 0.89963 0.99910 1.62105 1.13982 1.10704 1.38856 1.22175 0.87727 1.02194 0.96277 1.21757 1.00909 1.00512 0.97057 1.20847 1.00325 0.90593 0.89910 1.19086 0.95244 0.94169 1.09255 1.20585 0.95333 0.94457 0.98250 1.21113 1.00809 0.94173 1.09234 1.19389 0.92857 0.85525 0.92039 1.83980 1.37225 1.18811 1.68259 1.21362 0.91240 0.92847 1.41229 0.89091 1.25283 0.99546 0.94859 0.96879 1.70049 1.34313 1.04247 1.41240 0.85656 0.80146 0.79150 0.78521 1.19147 1.20158 1.20163 1.20215 0.95755 0.95696 1.09640 1.20437 0.97886 0.92281 0.96549 0.92618 0.92765 0.93015 0.92388 0.92144 0.90929 0.91974 0.95534 0.90946 0.95645 0.89435 0.92646 0.91704 0.93426 0.90620 0.95281 0.87996 0.85705 0.92106 0.86618 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.15 5.03 -26.73 -0.13 -1.28 16 4 C 0.05 0.57 4.81 -3.83 -0.02 0.55 16 5 N -0.53 -7.00 4.46 -236.08 -1.05 -8.05 16 6 C 0.04 0.57 5.52 -3.83 -0.02 0.55 16 7 C -0.14 -1.67 9.86 37.16 0.37 -1.30 16 8 C 0.11 1.54 4.98 -4.98 -0.02 1.51 16 9 C -0.18 -3.04 4.94 -104.58 -0.52 -3.55 16 10 C -0.07 -1.24 7.84 -39.61 -0.31 -1.55 16 11 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 12 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 13 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 14 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 15 H 0.09 2.38 5.21 -52.48 -0.27 2.10 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 22 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 23 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.62 6.61 -51.93 -0.34 0.28 16 31 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.07 0.74 6.45 -51.93 -0.33 0.40 16 33 H 0.03 0.31 8.06 -51.93 -0.42 -0.11 16 34 H 0.09 1.31 5.16 -51.93 -0.27 1.04 16 35 H 0.05 0.58 8.14 -51.94 -0.42 0.16 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.48 6.77 -51.93 -0.35 0.13 16 38 H 0.08 0.98 6.13 -51.93 -0.32 0.66 16 39 H 0.03 0.39 8.06 -51.93 -0.42 -0.02 16 40 H 0.10 1.63 7.74 -52.49 -0.41 1.22 16 41 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 44 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -29.87 351.59 -8.88 -38.76 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.21 Total: 2.83 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.65 Total: -24.55 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.29 Total: -32.80 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.87 -8.88 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077012529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.840 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds