Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05858 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02769 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47066 * 265.00090 * 9 8 7 11 11 H 1.09002 * 109.47384 * 55.00368 * 10 9 8 12 12 C 1.53003 * 109.47202 * 175.00029 * 10 9 8 13 13 N 1.46897 * 109.47475 * 295.00289 * 10 9 8 14 14 C 1.46901 * 110.99696 * 298.95364 * 13 10 9 15 15 C 1.46900 * 111.00549 * 175.00118 * 13 10 9 16 16 C 1.53002 * 109.47368 * 189.99787 * 15 13 10 17 17 C 1.50701 * 109.46996 * 179.97438 * 16 15 13 18 18 H 1.07991 * 119.99940 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99781 * 180.02562 * 17 16 15 20 20 N 1.31523 * 120.00015 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47116 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47362 * 119.99772 * 21 19 17 24 24 H 1.48497 * 109.46986 * 239.99554 * 21 19 17 25 25 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 26 26 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 28 28 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 30 30 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 31 31 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47706 * 25.00195 * 9 8 7 33 33 H 1.09002 * 109.47223 * 145.00563 * 9 8 7 34 34 H 1.08995 * 109.47184 * 299.99937 * 12 10 9 35 35 H 1.09004 * 109.47118 * 60.00531 * 12 10 9 36 36 H 1.08998 * 109.47286 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47118 * 59.99876 * 14 13 10 38 38 H 1.09007 * 109.47288 * 179.97438 * 14 13 10 39 39 H 1.08995 * 109.47668 * 299.99886 * 14 13 10 40 40 H 1.08995 * 109.46838 * 309.99960 * 15 13 10 41 41 H 1.09001 * 109.47113 * 69.99927 * 15 13 10 42 42 H 1.09000 * 109.46977 * 300.00263 * 16 15 13 43 43 H 1.09001 * 109.46889 * 60.00003 * 16 15 13 44 44 H 0.97002 * 119.99765 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0049 9 6 4.2538 0.0223 -0.0108 10 6 4.4270 -0.4667 -1.4501 11 1 4.8531 0.3324 -2.0567 12 6 5.3642 -1.6760 -1.4686 13 7 3.1193 -0.8524 -1.9971 14 6 2.5249 -1.9467 -1.2179 15 6 3.2285 -1.2155 -3.4163 16 6 1.8279 -1.3681 -4.0129 17 6 1.9400 -1.7401 -5.4690 18 1 2.9128 -1.8564 -5.9233 19 6 0.8005 -1.9318 -6.2212 20 7 -0.3842 -1.7906 -5.6678 21 14 0.9394 -2.3935 -8.0259 22 1 2.3723 -2.4902 -8.4032 23 1 0.2774 -3.7031 -8.2542 24 1 0.2787 -1.3538 -8.8551 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2127 2.3204 -0.0005 29 1 1.3339 4.5113 0.0091 30 1 3.7921 4.6382 0.0109 31 1 5.1344 2.5754 0.0018 32 1 5.2324 0.2242 0.4246 33 1 3.7467 -0.7445 0.5749 34 1 6.3345 -1.3898 -1.0628 35 1 4.9381 -2.4752 -0.8621 36 1 5.4880 -2.0241 -2.4940 37 1 2.3909 -1.6261 -0.1848 38 1 1.5573 -2.2123 -1.6440 39 1 3.1850 -2.8135 -1.2466 40 1 3.7680 -0.4337 -3.9509 41 1 3.7679 -2.1581 -3.5097 42 1 1.2884 -2.1500 -3.4783 43 1 1.2885 -0.4255 -3.9195 44 1 -1.1859 -1.9259 -6.1970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088194790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = -10.871479 kcal Electronic energy + Delta-G solvation = -22612.936180 eV Core-core repulsion = 19530.679511 eV Total energy + Delta-G solvation = -3082.256670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07873 -37.84859 -37.04797 -33.68160 -32.40029 -30.50560 -29.80353 -28.71799 -27.10341 -26.32373 -25.73297 -23.82309 -21.85192 -21.52862 -20.26715 -18.94857 -17.64384 -16.57964 -16.08058 -15.57106 -15.37133 -15.01930 -14.49567 -14.27309 -14.12217 -13.78010 -13.46761 -13.38331 -13.01139 -12.38779 -12.30337 -12.10170 -11.90862 -11.66799 -11.52793 -11.33148 -11.12458 -10.93662 -10.90033 -10.78227 -10.63747 -10.48740 -10.37894 -10.19563 -9.69513 -9.27084 -9.03276 -8.58351 -8.27780 -7.76281 -7.37971 -5.95438 -3.96536 1.56887 1.75742 3.33156 3.40492 3.44825 3.65835 4.02686 4.46488 4.70956 4.96190 5.07050 5.19157 5.29554 5.36370 5.40710 5.43043 5.52564 5.57763 5.62230 5.75438 5.80293 5.82673 5.89253 5.97261 5.99048 6.17612 6.18292 6.26024 6.33003 6.45741 6.54883 6.60889 6.68693 6.71836 6.77041 6.86773 7.06241 7.12528 7.68951 7.77069 7.79217 7.93540 8.05283 8.19328 8.52078 9.11425 9.66607 11.16076 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.005013 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.273442 B = 5584.348990 C = 6085.788360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.286 6.286 3 C 0.159 3.841 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.100 4.100 9 C -0.065 4.065 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.186 4.186 13 N -0.521 5.521 14 C 0.026 3.974 15 C 0.062 3.938 16 C 0.032 3.968 17 C -0.518 4.518 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.021 0.979 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 6.507 15.174 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.198 6.198 3 C 0.113 3.887 4 C -0.231 4.231 5 C -0.107 4.107 6 C -0.185 4.185 7 C -0.105 4.105 8 C -0.100 4.100 9 C -0.103 4.103 10 C -0.025 4.025 11 H 0.093 0.907 12 C -0.245 4.245 13 N -0.244 5.244 14 C -0.121 4.121 15 C -0.065 4.065 16 C -0.005 4.005 17 C -0.557 4.557 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.823 6.700 15.161 17.569 hybrid contribution 0.193 -0.747 -1.308 1.519 sum 6.016 5.954 13.853 16.234 Atomic orbital electron populations 1.22997 0.79524 1.03775 1.00705 1.86364 1.20336 1.25476 1.87601 1.18782 0.91699 0.84524 0.93664 1.21209 0.99916 0.92562 1.09392 1.20820 0.94608 0.96776 0.98498 1.20877 0.93927 0.97963 1.05745 1.20789 0.99331 0.91322 0.99015 1.19027 0.90805 0.95233 1.04969 1.20564 0.98180 0.94638 0.96902 1.21674 0.89803 0.96225 0.94772 0.90722 1.22473 0.99701 1.00016 1.02277 1.62229 1.20222 1.38694 1.03234 1.22553 0.99315 0.91266 0.98983 1.22307 1.01061 0.97186 0.85897 1.19047 0.90061 0.97285 0.94155 1.21276 0.92335 1.46565 0.95487 0.92914 1.24977 0.95426 0.95656 0.98248 1.69987 0.97239 1.50200 1.36000 0.86577 0.78070 0.78022 0.85571 1.19816 1.21095 1.21052 0.92311 0.88573 0.93768 0.85907 0.86582 0.86665 0.86147 0.91545 0.90604 0.92956 0.92425 0.92257 0.90404 0.91339 0.97263 0.92770 0.96426 0.96598 0.96070 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.29 -4.36 5.07 -19.44 -0.10 -4.46 16 3 C 0.16 2.44 6.29 -39.22 -0.25 2.19 16 4 C -0.21 -3.00 9.04 -39.43 -0.36 -3.35 16 5 C -0.09 -1.14 10.04 -39.60 -0.40 -1.54 16 6 C -0.17 -2.07 10.04 -39.56 -0.40 -2.47 16 7 C -0.09 -1.12 9.68 -39.61 -0.38 -1.50 16 8 C -0.10 -1.44 5.03 -104.48 -0.53 -1.97 16 9 C -0.07 -0.88 4.56 -27.89 -0.13 -1.00 16 10 C 0.08 1.30 2.33 -67.71 -0.16 1.14 16 11 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 12 C -0.19 -2.59 8.50 37.16 0.32 -2.27 16 13 N -0.52 -9.66 3.63 -234.89 -0.85 -10.51 16 14 C 0.03 0.46 7.17 60.07 0.43 0.89 16 15 C 0.06 1.37 4.34 -3.82 -0.02 1.35 16 16 C 0.03 0.85 4.90 -27.88 -0.14 0.71 16 17 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.06 0.83 7.66 -51.93 -0.40 0.44 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.08 1.04 5.92 -51.93 -0.31 0.73 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.80 6.39 -51.93 -0.33 0.46 16 36 H 0.06 0.90 6.75 -51.93 -0.35 0.55 16 37 H 0.08 1.24 3.92 -51.93 -0.20 1.03 16 38 H 0.07 1.35 6.30 -51.93 -0.33 1.02 16 39 H 0.01 0.15 6.28 -51.93 -0.33 -0.17 16 40 H 0.05 1.20 8.00 -51.93 -0.42 0.79 16 41 H 0.02 0.39 6.94 -51.93 -0.36 0.03 16 42 H 0.02 0.44 6.47 -51.93 -0.34 0.11 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -31.29 338.48 -8.55 -39.84 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.00 Total: -0.33 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.42 Total: -20.20 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.12 Total: -36.94 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.10 Total: -4.46 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.29 -8.55 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088194790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.966 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds