Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38173 * 120.05858 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02769 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47066 * 265.00090 * 9 8 7 11 11 H 1.09002 * 109.47384 * 55.00368 * 10 9 8 12 12 C 1.53003 * 109.47202 * 175.00029 * 10 9 8 13 13 N 1.46897 * 109.47475 * 295.00289 * 10 9 8 14 14 C 1.46901 * 110.99696 * 298.95364 * 13 10 9 15 15 C 1.46900 * 111.00549 * 175.00118 * 13 10 9 16 16 C 1.53002 * 109.47368 * 189.99787 * 15 13 10 17 17 C 1.50701 * 109.46996 * 179.97438 * 16 15 13 18 18 H 1.07991 * 119.99940 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99781 * 180.02562 * 17 16 15 20 20 N 1.31523 * 120.00015 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47116 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47362 * 119.99772 * 21 19 17 24 24 H 1.48497 * 109.46986 * 239.99554 * 21 19 17 25 25 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 26 26 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 28 28 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97249 * 180.25614 * 5 4 3 30 30 H 1.08003 * 119.94130 * 180.02562 * 6 5 4 31 31 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47706 * 25.00195 * 9 8 7 33 33 H 1.09002 * 109.47223 * 145.00563 * 9 8 7 34 34 H 1.08995 * 109.47184 * 299.99937 * 12 10 9 35 35 H 1.09004 * 109.47118 * 60.00531 * 12 10 9 36 36 H 1.08998 * 109.47286 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47118 * 59.99876 * 14 13 10 38 38 H 1.09007 * 109.47288 * 179.97438 * 14 13 10 39 39 H 1.08995 * 109.47668 * 299.99886 * 14 13 10 40 40 H 1.08995 * 109.46838 * 309.99960 * 15 13 10 41 41 H 1.09001 * 109.47113 * 69.99927 * 15 13 10 42 42 H 1.09000 * 109.46977 * 300.00263 * 16 15 13 43 43 H 1.09001 * 109.46889 * 60.00003 * 16 15 13 44 44 H 0.97002 * 119.99765 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 4.0559 2.5173 0.0010 8 6 3.4311 1.2849 -0.0049 9 6 4.2538 0.0223 -0.0108 10 6 4.4270 -0.4667 -1.4501 11 1 4.8531 0.3324 -2.0567 12 6 5.3642 -1.6760 -1.4686 13 7 3.1193 -0.8524 -1.9971 14 6 2.5249 -1.9467 -1.2179 15 6 3.2285 -1.2155 -3.4163 16 6 1.8279 -1.3681 -4.0129 17 6 1.9400 -1.7401 -5.4690 18 1 2.9128 -1.8564 -5.9233 19 6 0.8005 -1.9318 -6.2212 20 7 -0.3842 -1.7906 -5.6678 21 14 0.9394 -2.3935 -8.0259 22 1 2.3723 -2.4902 -8.4032 23 1 0.2774 -3.7031 -8.2542 24 1 0.2787 -1.3538 -8.8551 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2127 2.3204 -0.0005 29 1 1.3339 4.5113 0.0091 30 1 3.7921 4.6382 0.0109 31 1 5.1344 2.5754 0.0018 32 1 5.2324 0.2242 0.4246 33 1 3.7467 -0.7445 0.5749 34 1 6.3345 -1.3898 -1.0628 35 1 4.9381 -2.4752 -0.8621 36 1 5.4880 -2.0241 -2.4940 37 1 2.3909 -1.6261 -0.1848 38 1 1.5573 -2.2123 -1.6440 39 1 3.1850 -2.8135 -1.2466 40 1 3.7680 -0.4337 -3.9509 41 1 3.7679 -2.1581 -3.5097 42 1 1.2884 -2.1500 -3.4783 43 1 1.2885 -0.4255 -3.9195 44 1 -1.1859 -1.9259 -6.1970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088194790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = -28.295206 kcal Electronic energy + Delta-G solvation = -22613.691730 eV Core-core repulsion = 19530.679511 eV Total energy + Delta-G solvation = -3083.012219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16015 -39.23186 -38.10771 -35.55723 -34.01401 -31.93968 -30.84965 -30.37404 -28.18416 -27.74936 -27.05095 -25.70078 -22.88835 -22.84176 -21.81748 -20.36388 -18.70581 -18.60713 -17.36895 -16.70587 -16.62372 -16.38630 -16.35647 -15.68711 -15.30521 -15.16182 -14.74818 -14.50278 -14.29366 -14.12593 -13.79433 -13.39147 -13.15149 -12.99133 -12.95070 -12.81980 -12.68261 -12.58168 -12.37592 -12.05515 -12.02521 -11.79125 -11.65149 -11.52676 -11.40955 -11.26645 -11.13797 -10.53038 -9.61708 -8.86354 -8.82350 -8.19722 -6.30405 0.54722 0.72752 1.38430 1.38954 1.52251 2.39949 2.59804 2.99601 3.13400 3.27232 3.92519 4.05693 4.13226 4.24247 4.30713 4.35445 4.46774 4.47801 4.51046 4.53521 4.62611 4.68133 4.78430 4.79457 4.82241 4.86364 4.87834 4.97464 5.06009 5.08769 5.18407 5.34939 5.36770 5.40079 5.48772 5.63132 5.68987 5.73097 5.75855 5.84239 6.07655 6.18695 6.47424 6.54763 6.69842 6.87326 7.38312 8.92526 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.005013 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.273442 B = 5584.348990 C = 6085.788360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.134 3.866 4 C -0.230 4.230 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.089 4.089 8 C -0.119 4.119 9 C -0.056 4.056 10 C 0.084 3.916 11 H 0.069 0.931 12 C -0.179 4.179 13 N -0.529 5.529 14 C 0.038 3.962 15 C 0.081 3.919 16 C 0.045 3.955 17 C -0.543 4.543 18 H 0.056 0.944 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.278 1.278 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.015 0.985 40 H 0.049 0.951 41 H 0.017 0.983 42 H -0.007 1.007 43 H -0.016 1.016 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 7.100 15.432 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.088 3.912 4 C -0.249 4.249 5 C -0.114 4.114 6 C -0.187 4.187 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.094 4.094 10 C -0.025 4.025 11 H 0.087 0.913 12 C -0.238 4.238 13 N -0.252 5.252 14 C -0.110 4.110 15 C -0.047 4.047 16 C 0.008 3.992 17 C -0.582 4.582 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.203 1.203 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.012 0.988 43 H 0.003 0.997 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.648 7.298 15.437 18.710 hybrid contribution -0.397 -0.853 -1.331 1.630 sum 7.251 6.445 14.106 17.120 Atomic orbital electron populations 1.23044 0.78885 1.04206 1.00829 1.86271 1.21127 1.26106 1.87944 1.19108 0.92512 0.84693 0.94873 1.21433 1.00409 0.93056 1.09987 1.21169 0.95403 0.97053 0.97815 1.21263 0.93828 0.99134 1.04524 1.21149 1.00759 0.90827 0.97966 1.19302 0.90654 0.96340 1.05676 1.20518 0.99584 0.94096 0.95182 1.21760 0.88176 0.96698 0.95867 0.91293 1.22394 1.00788 0.99123 1.01452 1.62119 1.22793 1.38848 1.01485 1.22435 0.97718 0.91305 0.99496 1.21913 0.97641 0.97012 0.88115 1.18828 0.92247 0.94377 0.93786 1.21671 0.92730 1.47039 0.96713 0.92582 1.25930 0.94907 0.95254 1.03418 1.70121 0.98117 1.50764 1.38080 0.85413 0.78595 0.77924 0.79192 1.18713 1.20213 1.20342 0.94429 0.88033 0.91311 0.85505 0.84476 0.84016 0.83605 0.88537 0.91044 0.90013 0.92333 0.93948 0.88505 0.94405 0.96663 0.93208 0.96446 0.98841 0.99721 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.81 113.37 1.11 1.80 16 2 O -0.30 -9.41 5.07 -92.47 -0.47 -9.88 16 3 C 0.13 4.09 6.29 22.51 0.14 4.23 16 4 C -0.23 -6.49 9.04 22.37 0.20 -6.29 16 5 C -0.10 -2.35 10.04 22.26 0.22 -2.13 16 6 C -0.17 -3.81 10.04 22.28 0.22 -3.59 16 7 C -0.09 -2.09 9.68 22.25 0.22 -1.88 16 8 C -0.12 -3.29 5.03 -19.77 -0.10 -3.39 16 9 C -0.06 -1.40 4.56 29.85 0.14 -1.27 16 10 C 0.08 2.47 2.33 44.92 0.10 2.57 16 11 H 0.07 2.12 8.03 -2.39 -0.02 2.10 16 12 C -0.18 -4.62 8.50 71.98 0.61 -4.01 16 13 N -0.53 -19.89 3.63 -897.04 -3.25 -23.14 16 14 C 0.04 1.35 7.17 127.69 0.92 2.27 16 15 C 0.08 3.64 4.34 86.30 0.37 4.01 16 16 C 0.05 2.51 4.90 29.85 0.15 2.66 16 17 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 18 H 0.06 3.20 7.74 -2.92 -0.02 3.18 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 21 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H 0.04 1.15 7.66 -2.39 -0.02 1.13 16 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 28 H 0.13 3.30 6.30 -2.91 -0.02 3.28 16 29 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.10 1.82 8.05 -2.39 -0.02 1.80 16 33 H 0.07 1.84 5.92 -2.39 -0.01 1.83 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.50 6.39 -2.39 -0.02 1.49 16 36 H 0.04 1.23 6.75 -2.39 -0.02 1.22 16 37 H 0.10 3.09 3.92 -2.39 -0.01 3.08 16 38 H 0.04 1.56 6.30 -2.38 -0.02 1.54 16 39 H 0.02 0.52 6.28 -2.39 -0.02 0.50 16 40 H 0.05 2.25 8.00 -2.39 -0.02 2.23 16 41 H 0.02 0.78 6.94 -2.39 -0.02 0.76 16 42 H -0.01 -0.40 6.47 -2.39 -0.02 -0.41 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.73 338.48 4.56 -64.17 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.97 Total: 15.34 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 5.00 Total: -36.27 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.97 Total: -80.71 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.47 Total: -9.88 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.73 4.56 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088194790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.876 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds