Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47102 * 2 1 4 4 N 1.46899 * 109.46564 * 240.00368 * 2 1 3 5 5 C 1.46899 * 111.00466 * 85.00219 * 4 2 1 6 6 C 1.50697 * 109.47281 * 179.97438 * 5 4 2 7 7 C 1.38315 * 119.96476 * 269.71843 * 6 5 4 8 8 C 1.38283 * 120.13585 * 179.76642 * 7 6 5 9 9 C 1.38117 * 120.07177 * 0.51165 * 8 7 6 10 10 C 1.38865 * 119.92678 * 359.74808 * 9 8 7 11 11 O 1.35751 * 120.06541 * 179.97438 * 10 9 8 12 12 C 1.34832 * 117.00121 * 354.48508 * 11 10 9 13 13 H 1.07999 * 120.00113 * 5.06265 * 12 11 10 14 14 C 1.38659 * 119.99641 * 185.05304 * 12 11 10 15 15 N 1.31555 * 119.99671 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00243 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46902 * 89.99391 * 16 14 12 18 18 H 1.48499 * 109.47102 * 209.99774 * 16 14 12 19 19 H 1.48496 * 109.47021 * 329.99548 * 16 14 12 20 20 C 1.38081 * 119.96280 * 89.99944 * 6 5 4 21 21 C 1.52993 * 109.47168 * 120.00311 * 2 1 3 22 22 C 1.53006 * 109.47168 * 180.02562 * 21 2 1 23 23 C 1.52998 * 109.47627 * 59.99759 * 21 2 1 24 24 C 1.52999 * 109.47206 * 299.99604 * 21 2 1 25 25 H 1.08996 * 109.47424 * 59.99870 * 1 2 3 26 26 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46687 * 299.99972 * 1 2 3 28 28 H 1.00904 * 111.00357 * 321.03744 * 4 2 1 29 29 H 1.09006 * 109.46492 * 299.99621 * 5 4 2 30 30 H 1.09001 * 109.47152 * 59.99159 * 5 4 2 31 31 H 1.07993 * 119.93380 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.96453 * 180.25746 * 8 7 6 33 33 H 1.08006 * 120.03758 * 179.76618 * 9 8 7 34 34 H 0.96995 * 120.00219 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.04042 * 359.95430 * 20 6 5 36 36 H 1.08998 * 109.46863 * 300.00277 * 22 21 2 37 37 H 1.09001 * 109.47102 * 59.99689 * 22 21 2 38 38 H 1.08996 * 109.47424 * 179.97438 * 22 21 2 39 39 H 1.08996 * 109.47351 * 179.97438 * 23 21 2 40 40 H 1.08999 * 109.47163 * 299.99963 * 23 21 2 41 41 H 1.08998 * 109.47028 * 59.99902 * 23 21 2 42 42 H 1.09001 * 109.47160 * 300.00369 * 24 21 2 43 43 H 1.08999 * 109.46964 * 60.00417 * 24 21 2 44 44 H 1.09000 * 109.47660 * 180.02562 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5883 -0.5215 -3.5558 7 6 3.9451 -0.5680 -3.8206 8 6 4.4136 -1.2538 -4.9262 9 6 3.5266 -1.8859 -5.7756 10 6 2.1635 -1.8364 -5.5154 11 8 1.2892 -2.4562 -6.3487 12 6 1.7969 -3.0044 -7.4710 13 1 2.8646 -3.0106 -7.6337 14 6 0.9483 -3.5602 -8.4162 15 7 1.4437 -4.0947 -9.5115 16 14 -0.8984 -3.5490 -8.1351 17 1 -1.4786 -2.3075 -8.7072 18 1 -1.5071 -4.7307 -8.7971 19 1 -1.1775 -3.5998 -6.6775 20 6 1.6964 -1.1512 -4.4011 21 6 2.0401 -0.7213 1.2491 22 6 3.5701 -0.7207 1.2495 23 6 1.5301 -2.1638 1.2492 24 6 1.5302 -0.0001 2.4984 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.4495 -1.4979 -1.4101 29 1 1.0869 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1183 31 1 4.6404 -0.0712 -3.1602 32 1 5.4739 -1.2919 -5.1280 33 1 3.8929 -2.4182 -6.6410 34 1 0.8501 -4.4832 -10.1729 35 1 0.6368 -1.1113 -4.1960 36 1 3.9338 -1.2342 0.3594 37 1 3.9331 0.3071 1.2497 38 1 3.9335 -1.2342 2.1396 39 1 1.8938 -2.6777 2.1389 40 1 0.4401 -2.1638 1.2493 41 1 1.8934 -2.6776 0.3592 42 1 1.8935 1.0276 2.4984 43 1 0.4402 -0.0001 2.4985 44 1 1.8938 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089630510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -19.762869 kcal Electronic energy + Delta-G solvation = -21485.994073 eV Core-core repulsion = 18403.351844 eV Total energy + Delta-G solvation = -3082.642229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38320 -38.80058 -36.83247 -34.39841 -32.37653 -31.03895 -29.51275 -28.81472 -27.40809 -26.95818 -25.37390 -24.61703 -22.70398 -21.62340 -20.54598 -18.62167 -17.69070 -17.11704 -15.59947 -15.34713 -15.24058 -15.04604 -14.46096 -14.28122 -14.00433 -13.85114 -13.75464 -13.45147 -12.83664 -12.67469 -12.52970 -12.34911 -12.25319 -12.03615 -11.92484 -11.70746 -11.66407 -11.44890 -11.27789 -10.87327 -10.81473 -10.72259 -10.70919 -10.58396 -10.34386 -10.13847 -9.38254 -8.86766 -8.38326 -8.08796 -7.34946 -6.40535 -4.07490 2.04254 2.30553 3.21674 3.25286 3.39729 4.16624 4.23960 4.58996 4.60413 4.74102 4.83002 4.98018 5.10867 5.13945 5.22220 5.25913 5.30385 5.47411 5.51475 5.60193 5.65831 5.67636 5.76068 5.81383 5.82869 5.85235 5.88902 5.91339 5.98375 6.08043 6.14444 6.20016 6.26516 6.36493 6.47095 6.54871 6.80251 7.09776 7.12856 7.26973 7.33811 7.47052 7.62648 7.81819 8.05438 8.94989 9.57911 10.67412 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.003739 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.437004 B = 7485.903101 C = 8163.093459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.675 5.675 5 C 0.106 3.894 6 C -0.048 4.048 7 C -0.180 4.180 8 C -0.079 4.079 9 C -0.218 4.218 10 C 0.158 3.842 11 O -0.220 6.220 12 C -0.389 4.389 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.881 5.881 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.185 4.185 21 C -0.056 4.056 22 C -0.132 4.132 23 C -0.144 4.144 24 C -0.144 4.144 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.344 0.656 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.279 0.721 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 7.995 20.118 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 H 0.092 0.908 4 N -0.305 5.305 5 C -0.022 4.022 6 C -0.049 4.049 7 C -0.199 4.199 8 C -0.097 4.097 9 C -0.238 4.238 10 C 0.107 3.893 11 O -0.126 6.126 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.520 5.520 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.205 4.205 21 C -0.057 4.057 22 C -0.189 4.189 23 C -0.201 4.201 24 C -0.202 4.202 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.658 7.926 20.073 21.591 hybrid contribution -1.609 -0.025 -0.412 1.662 sum -0.951 7.901 19.660 21.210 Atomic orbital electron populations 1.22636 0.97665 1.02427 1.01996 1.21567 0.92195 0.97532 0.90419 0.90759 1.60599 1.57398 1.09532 1.02988 1.20814 0.98968 0.94310 0.88130 1.19177 0.93317 0.97837 0.94526 1.20480 0.94353 1.05606 0.99503 1.20804 0.98455 0.96227 0.94208 1.21307 0.92941 1.06435 1.03087 1.19043 0.89060 0.90867 0.90368 1.83567 1.34816 1.63038 1.31131 1.20763 0.95386 1.36490 0.93835 0.87663 1.24454 1.00134 0.95491 0.93913 1.69643 1.36505 1.37372 1.08434 0.86188 0.83344 0.77811 0.79582 1.19937 1.20796 1.18442 1.20025 0.99004 1.04671 0.96826 1.20482 0.96244 0.95423 0.93514 1.21740 0.94042 1.01244 1.01908 1.21909 1.00467 0.95669 1.02068 1.21957 1.00926 1.00098 0.97214 0.92813 0.92015 0.91982 0.83684 0.94826 0.90701 0.87440 0.87250 0.85079 0.91090 0.87031 0.90888 0.93544 0.93797 0.93189 0.92977 0.91681 0.92918 0.92620 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.46 37.16 0.31 -1.42 16 2 C 0.09 0.91 1.87 -67.71 -0.13 0.79 16 3 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 4 N -0.67 -8.02 4.99 -107.99 -0.54 -8.56 16 5 C 0.11 1.39 5.61 -4.98 -0.03 1.37 16 6 C -0.05 -0.80 5.39 -104.65 -0.56 -1.37 16 7 C -0.18 -3.03 9.70 -39.54 -0.38 -3.41 16 8 C -0.08 -1.44 10.04 -39.61 -0.40 -1.83 16 9 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 O -0.22 -5.83 8.59 0.04 0.00 -5.83 16 12 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 13 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 14 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 15 N -0.88 -25.61 13.96 55.48 0.77 -24.84 16 16 Si 0.91 21.77 28.62 -169.99 -4.86 16.91 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 20 C -0.19 -3.64 9.65 -39.40 -0.38 -4.02 16 21 C -0.06 -0.51 0.62 -154.51 -0.10 -0.61 16 22 C -0.13 -1.29 8.32 37.16 0.31 -0.98 16 23 C -0.14 -1.35 7.85 37.16 0.29 -1.06 16 24 C -0.14 -1.13 8.12 37.16 0.30 -0.83 16 25 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 26 H 0.06 0.58 6.42 -51.93 -0.33 0.24 16 27 H 0.06 0.50 6.43 -51.92 -0.33 0.17 16 28 H 0.34 4.34 7.72 -39.29 -0.30 4.04 16 29 H 0.03 0.43 7.38 -51.93 -0.38 0.05 16 30 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.13 3.00 5.64 -52.48 -0.30 2.70 16 34 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.07 0.83 7.60 -51.93 -0.39 0.44 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.46 6.43 -51.93 -0.33 0.13 16 41 H 0.06 0.69 7.21 -51.93 -0.37 0.31 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.41 6.43 -51.93 -0.33 0.08 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -28.52 347.48 -7.66 -36.18 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.10 Total: 5.01 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -1.17 Total: -24.11 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.24 Total: -33.40 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: 0.00 Total: -5.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.52 -7.66 -36.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.414 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds