Wall clock time and date at job start Mon Mar 30 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47102 * 2 1 4 4 N 1.46899 * 109.46564 * 240.00368 * 2 1 3 5 5 C 1.46899 * 111.00466 * 85.00219 * 4 2 1 6 6 C 1.50697 * 109.47281 * 179.97438 * 5 4 2 7 7 C 1.38315 * 119.96476 * 269.71843 * 6 5 4 8 8 C 1.38283 * 120.13585 * 179.76642 * 7 6 5 9 9 C 1.38117 * 120.07177 * 0.51165 * 8 7 6 10 10 C 1.38865 * 119.92678 * 359.74808 * 9 8 7 11 11 O 1.35751 * 120.06541 * 179.97438 * 10 9 8 12 12 C 1.34832 * 117.00121 * 354.48508 * 11 10 9 13 13 H 1.07999 * 120.00113 * 5.06265 * 12 11 10 14 14 C 1.38659 * 119.99641 * 185.05304 * 12 11 10 15 15 N 1.31555 * 119.99671 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00243 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46902 * 89.99391 * 16 14 12 18 18 H 1.48499 * 109.47102 * 209.99774 * 16 14 12 19 19 H 1.48496 * 109.47021 * 329.99548 * 16 14 12 20 20 C 1.38081 * 119.96280 * 89.99944 * 6 5 4 21 21 C 1.52993 * 109.47168 * 120.00311 * 2 1 3 22 22 C 1.53006 * 109.47168 * 180.02562 * 21 2 1 23 23 C 1.52998 * 109.47627 * 59.99759 * 21 2 1 24 24 C 1.52999 * 109.47206 * 299.99604 * 21 2 1 25 25 H 1.08996 * 109.47424 * 59.99870 * 1 2 3 26 26 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46687 * 299.99972 * 1 2 3 28 28 H 1.00904 * 111.00357 * 321.03744 * 4 2 1 29 29 H 1.09006 * 109.46492 * 299.99621 * 5 4 2 30 30 H 1.09001 * 109.47152 * 59.99159 * 5 4 2 31 31 H 1.07993 * 119.93380 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.96453 * 180.25746 * 8 7 6 33 33 H 1.08006 * 120.03758 * 179.76618 * 9 8 7 34 34 H 0.96995 * 120.00219 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.04042 * 359.95430 * 20 6 5 36 36 H 1.08998 * 109.46863 * 300.00277 * 22 21 2 37 37 H 1.09001 * 109.47102 * 59.99689 * 22 21 2 38 38 H 1.08996 * 109.47424 * 179.97438 * 22 21 2 39 39 H 1.08996 * 109.47351 * 179.97438 * 23 21 2 40 40 H 1.08999 * 109.47163 * 299.99963 * 23 21 2 41 41 H 1.08998 * 109.47028 * 59.99902 * 23 21 2 42 42 H 1.09001 * 109.47160 * 300.00369 * 24 21 2 43 43 H 1.08999 * 109.46964 * 60.00417 * 24 21 2 44 44 H 1.09000 * 109.47660 * 180.02562 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5883 -0.5215 -3.5558 7 6 3.9451 -0.5680 -3.8206 8 6 4.4136 -1.2538 -4.9262 9 6 3.5266 -1.8859 -5.7756 10 6 2.1635 -1.8364 -5.5154 11 8 1.2892 -2.4562 -6.3487 12 6 1.7969 -3.0044 -7.4710 13 1 2.8646 -3.0106 -7.6337 14 6 0.9483 -3.5602 -8.4162 15 7 1.4437 -4.0947 -9.5115 16 14 -0.8984 -3.5490 -8.1351 17 1 -1.4786 -2.3075 -8.7072 18 1 -1.5071 -4.7307 -8.7971 19 1 -1.1775 -3.5998 -6.6775 20 6 1.6964 -1.1512 -4.4011 21 6 2.0401 -0.7213 1.2491 22 6 3.5701 -0.7207 1.2495 23 6 1.5301 -2.1638 1.2492 24 6 1.5302 -0.0001 2.4984 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.4495 -1.4979 -1.4101 29 1 1.0869 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1183 31 1 4.6404 -0.0712 -3.1602 32 1 5.4739 -1.2919 -5.1280 33 1 3.8929 -2.4182 -6.6410 34 1 0.8501 -4.4832 -10.1729 35 1 0.6368 -1.1113 -4.1960 36 1 3.9338 -1.2342 0.3594 37 1 3.9331 0.3071 1.2497 38 1 3.9335 -1.2342 2.1396 39 1 1.8938 -2.6777 2.1389 40 1 0.4401 -2.1638 1.2493 41 1 1.8934 -2.6776 0.3592 42 1 1.8935 1.0276 2.4984 43 1 0.4402 -0.0001 2.4985 44 1 1.8938 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089630510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:06 Heat of formation + Delta-G solvation = -35.476272 kcal Electronic energy + Delta-G solvation = -21486.675457 eV Core-core repulsion = 18403.351844 eV Total energy + Delta-G solvation = -3083.323614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93371 -39.79556 -38.41991 -35.44984 -34.44983 -32.25616 -31.02391 -29.89421 -28.11837 -27.77661 -27.24148 -25.85264 -23.63014 -23.10391 -22.12528 -19.71543 -19.42320 -18.73382 -16.87376 -16.73521 -16.38013 -16.22305 -15.86421 -15.61682 -15.39201 -15.08289 -14.95651 -14.53974 -14.35449 -14.16949 -13.84356 -13.69633 -13.29099 -12.99695 -12.89658 -12.79841 -12.64206 -12.48256 -12.45008 -12.39175 -12.22122 -12.11485 -11.93209 -11.46560 -11.41048 -11.28304 -11.11628 -10.91434 -9.73679 -9.19094 -9.04959 -8.50456 -6.23247 0.50292 0.71465 1.29953 1.34289 1.50525 2.27164 2.74199 3.03921 3.07939 3.49100 3.84950 3.95581 4.05017 4.10515 4.21669 4.33117 4.44477 4.45993 4.52041 4.58673 4.63500 4.69728 4.75883 4.88363 4.91089 4.93178 4.96189 5.06096 5.08570 5.17120 5.19752 5.24344 5.27525 5.36402 5.40472 5.49301 5.62972 5.68454 5.71325 5.77166 5.78787 5.92201 6.18157 6.28248 6.48424 6.84059 7.59129 8.61473 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.003739 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.437004 B = 7485.903101 C = 8163.093459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.678 5.678 5 C 0.112 3.888 6 C -0.037 4.037 7 C -0.160 4.160 8 C -0.078 4.078 9 C -0.239 4.239 10 C 0.120 3.880 11 O -0.247 6.247 12 C -0.399 4.399 13 H 0.080 0.920 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.264 1.264 20 C -0.185 4.185 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.141 4.141 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.339 0.661 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.285 0.715 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 9.884 23.201 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.014 4.014 3 H 0.098 0.902 4 N -0.308 5.308 5 C -0.016 4.016 6 C -0.038 4.038 7 C -0.179 4.179 8 C -0.096 4.096 9 C -0.259 4.259 10 C 0.071 3.929 11 O -0.155 6.155 12 C -0.475 4.475 13 H 0.097 0.903 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.191 1.191 19 H -0.188 1.188 20 C -0.204 4.204 21 C -0.055 4.055 22 C -0.186 4.186 23 C -0.200 4.200 24 C -0.199 4.199 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.298 9.839 23.194 25.197 hybrid contribution -1.277 -0.465 -1.117 1.759 sum -0.980 9.375 22.078 24.005 Atomic orbital electron populations 1.22595 0.97071 1.02322 1.02389 1.21609 0.92633 0.97572 0.89610 0.90216 1.60606 1.57773 1.09335 1.03109 1.20802 0.99665 0.94268 0.86902 1.19617 0.93042 0.96222 0.94869 1.20969 0.95030 1.03400 0.98521 1.21131 0.99440 0.95214 0.93772 1.21320 0.93349 1.07680 1.03509 1.19593 0.89548 0.92441 0.91328 1.83507 1.35562 1.65137 1.31261 1.20708 0.94597 1.37126 0.95117 0.90254 1.25278 1.04759 0.95223 0.93597 1.69728 1.38204 1.39101 1.09552 0.85214 0.77726 0.78561 0.79182 1.19055 1.19138 1.18793 1.20286 1.00178 1.04049 0.95914 1.20476 0.95877 0.95246 0.93875 1.21701 0.94417 1.01279 1.01251 1.21892 1.00721 0.95874 1.01495 1.21923 1.01238 1.00237 0.96479 0.93389 0.92389 0.90627 0.84260 0.94185 0.88794 0.83793 0.84382 0.87639 0.90578 0.86189 0.92712 0.93107 0.93302 0.92754 0.92564 0.93263 0.92337 0.92114 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 8.46 71.98 0.61 -2.27 16 2 C 0.10 1.58 1.87 44.92 0.08 1.66 16 3 H 0.08 1.28 7.80 -2.39 -0.02 1.26 16 4 N -0.68 -14.20 4.99 -495.58 -2.47 -16.67 16 5 C 0.11 2.54 5.61 85.56 0.48 3.02 16 6 C -0.04 -1.14 5.39 -19.88 -0.11 -1.24 16 7 C -0.16 -4.85 9.70 22.30 0.22 -4.63 16 8 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 9 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 O -0.25 -13.62 8.59 -22.77 -0.20 -13.82 16 12 C -0.40 -23.91 9.95 67.92 0.68 -23.24 16 13 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 14 C 0.01 0.56 5.49 84.83 0.47 1.03 16 15 N -0.92 -55.94 13.96 21.61 0.30 -55.64 16 16 Si 0.97 45.93 28.62 68.60 1.96 47.90 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 20 C -0.18 -7.10 9.65 22.39 0.22 -6.88 16 21 C -0.05 -0.84 0.62 -52.18 -0.03 -0.87 16 22 C -0.13 -2.17 8.32 71.98 0.60 -1.58 16 23 C -0.14 -2.39 7.85 71.98 0.57 -1.82 16 24 C -0.14 -1.75 8.12 71.98 0.58 -1.17 16 25 H 0.05 0.81 7.45 -2.39 -0.02 0.79 16 26 H 0.06 0.95 6.42 -2.39 -0.02 0.93 16 27 H 0.07 0.98 6.43 -2.38 -0.02 0.96 16 28 H 0.34 7.85 7.72 -89.69 -0.69 7.16 16 29 H 0.04 0.89 7.38 -2.38 -0.02 0.87 16 30 H 0.09 1.84 8.00 -2.39 -0.02 1.83 16 31 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.11 5.21 5.64 -2.91 -0.02 5.20 16 34 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.05 1.12 7.60 -2.39 -0.02 1.11 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16 41 H 0.05 0.98 7.21 -2.39 -0.02 0.96 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.70 6.43 -2.39 -0.02 0.69 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -64.43 347.48 4.82 -59.61 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.29 Total: 23.79 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 4.93 Total: -45.16 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -2.17 Total: -72.31 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.20 Total: -13.82 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.96 Total: 47.90 kcal Total: -64.43 4.82 -59.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.131 kcal (2) G-P(sol) polarization free energy of solvation -64.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds