Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47417 * 2 1 4 4 N 1.46904 * 109.47289 * 120.00479 * 2 1 3 5 5 C 1.46898 * 110.99751 * 274.99787 * 4 2 1 6 6 C 1.50703 * 109.47280 * 180.02562 * 5 4 2 7 7 C 1.38324 * 119.96095 * 269.96143 * 6 5 4 8 8 C 1.38279 * 120.13600 * 180.02562 * 7 6 5 9 9 C 1.38121 * 120.06858 * 0.03378 * 8 7 6 10 10 C 1.38860 * 119.93300 * 359.97438 * 9 8 7 11 11 O 1.35754 * 120.07146 * 179.97438 * 10 9 8 12 12 C 1.34826 * 116.99650 * 354.47785 * 11 10 9 13 13 H 1.07998 * 120.00391 * 5.06660 * 12 11 10 14 14 C 1.38661 * 119.99413 * 185.05921 * 12 11 10 15 15 N 1.31553 * 120.00489 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99450 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47049 * 120.00143 * 16 14 12 19 19 H 1.48504 * 109.46741 * 239.99971 * 16 14 12 20 20 C 1.38071 * 119.96609 * 89.99574 * 6 5 4 21 21 C 1.53004 * 109.47181 * 240.00198 * 2 1 3 22 22 C 1.52997 * 109.46973 * 300.00225 * 21 2 1 23 23 C 1.53006 * 109.46981 * 59.99918 * 21 2 1 24 24 C 1.52995 * 109.47350 * 179.97438 * 21 2 1 25 25 H 1.09006 * 109.47065 * 299.99780 * 1 2 3 26 26 H 1.09000 * 109.47287 * 59.99403 * 1 2 3 27 27 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 28 28 H 1.00902 * 111.00121 * 38.94978 * 4 2 1 29 29 H 1.09004 * 109.47129 * 59.99946 * 5 4 2 30 30 H 1.08999 * 109.47157 * 299.99933 * 5 4 2 31 31 H 1.07994 * 119.93581 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.96572 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.03769 * 179.97438 * 9 8 7 34 34 H 0.96992 * 119.99980 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.03508 * 0.25923 * 20 6 5 36 36 H 1.08998 * 109.47535 * 59.99876 * 22 21 2 37 37 H 1.09002 * 109.47394 * 179.97438 * 22 21 2 38 38 H 1.09000 * 109.47256 * 299.99455 * 22 21 2 39 39 H 1.09001 * 109.47080 * 59.99713 * 23 21 2 40 40 H 1.08993 * 109.47271 * 180.02562 * 23 21 2 41 41 H 1.09008 * 109.46926 * 300.00387 * 23 21 2 42 42 H 1.09010 * 109.46943 * 60.00523 * 24 21 2 43 43 H 1.09002 * 109.46786 * 179.97438 * 24 21 2 44 44 H 1.08990 * 109.47439 * 300.00604 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5886 -0.5217 3.5557 7 6 1.6952 -1.1519 4.4030 8 6 2.1556 -1.8353 5.5135 9 6 3.5097 -1.8898 5.7803 10 6 4.4091 -1.2580 4.9317 11 8 5.7405 -1.3094 5.1915 12 6 6.1163 -1.8909 6.3485 13 1 5.3784 -2.3619 6.9808 14 6 7.4504 -1.8841 6.7263 15 7 8.3494 -1.3100 5.9563 16 14 7.9712 -2.6904 8.3289 17 1 6.7792 -3.2601 9.0067 18 1 8.9448 -3.7749 8.0439 19 1 8.6038 -1.6764 9.2104 20 6 3.9435 -0.5730 3.8166 21 6 2.0400 -0.7212 -1.2493 22 6 1.5300 -2.1637 -1.2493 23 6 1.5300 0.0001 -2.4985 24 6 3.5700 -0.7207 -1.2497 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.4496 -1.4980 1.4100 29 1 1.0871 0.6162 2.5525 30 1 2.7589 1.0460 2.1182 31 1 0.6359 -1.1096 4.1973 32 1 1.4556 -2.3267 6.1730 33 1 3.8687 -2.4234 6.6480 34 1 9.2826 -1.3057 6.2205 35 1 4.6402 -0.0767 3.1573 36 1 0.4400 -2.1637 -1.2493 37 1 1.8929 -2.6774 -2.1396 38 1 1.8933 -2.6776 -0.3594 39 1 1.8932 1.0278 -2.4985 40 1 1.8929 -0.5139 -3.3885 41 1 0.4399 0.0001 -2.4985 42 1 3.9337 -1.2344 -0.3597 43 1 3.9332 -1.2349 -2.1395 44 1 3.9330 0.3070 -1.2498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089630512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -20.984803 kcal Electronic energy + Delta-G solvation = -21448.564961 eV Core-core repulsion = 18365.869744 eV Total energy + Delta-G solvation = -3082.695216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.25385 -38.67326 -36.64960 -34.30403 -32.24697 -30.96868 -29.31141 -28.66018 -27.35001 -26.85816 -25.44770 -24.53744 -22.59294 -21.59030 -20.58491 -18.58523 -17.57378 -16.91170 -15.57589 -15.31199 -15.09388 -14.82246 -14.38751 -14.29667 -14.21321 -13.77794 -13.53264 -13.23383 -12.84835 -12.73707 -12.37835 -12.34938 -12.02973 -11.91793 -11.78433 -11.57974 -11.50185 -11.39648 -11.24322 -10.84325 -10.76681 -10.67094 -10.57406 -10.51612 -10.42068 -10.22373 -9.29081 -8.81726 -8.25857 -8.00198 -7.19392 -6.41205 -4.00175 2.16411 2.40940 3.14268 3.15763 3.21274 3.99335 4.24561 4.65396 4.70016 4.82200 5.04262 5.09649 5.17201 5.21189 5.25935 5.33268 5.43402 5.57684 5.60945 5.66120 5.69802 5.74283 5.82425 5.87322 5.91323 5.92626 5.95218 5.97659 6.06697 6.15520 6.22189 6.27856 6.40997 6.43196 6.61845 6.70943 6.96652 7.11107 7.18272 7.34831 7.38971 7.48212 7.56876 7.86657 8.04000 9.04615 9.75942 10.77037 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.003522 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.691965 B = 7947.930338 C = 8614.279481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.093 3.907 3 H 0.075 0.925 4 N -0.672 5.672 5 C 0.107 3.893 6 C -0.047 4.047 7 C -0.207 4.207 8 C -0.076 4.076 9 C -0.233 4.233 10 C 0.152 3.848 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.166 4.166 21 C -0.056 4.056 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.342 0.658 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 1.467 -11.387 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.018 4.018 3 H 0.093 0.907 4 N -0.303 5.303 5 C -0.022 4.022 6 C -0.047 4.047 7 C -0.227 4.227 8 C -0.095 4.095 9 C -0.253 4.253 10 C 0.099 3.901 11 O -0.083 6.083 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.186 4.186 21 C -0.057 4.057 22 C -0.200 4.200 23 C -0.202 4.202 24 C -0.191 4.191 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.138 1.673 -11.669 17.651 hybrid contribution -0.751 -0.355 1.126 1.400 sum -13.889 1.318 -10.543 17.487 Atomic orbital electron populations 1.22627 0.97826 1.02212 1.01892 1.21576 0.92003 0.97682 0.90495 0.90689 1.60564 1.57294 1.09430 1.02988 1.20815 0.98676 0.94460 0.88206 1.19168 0.92714 0.97991 0.94853 1.20411 0.97723 1.06067 0.98494 1.20681 0.94760 0.97651 0.96363 1.21175 0.93227 1.07452 1.03399 1.19368 0.84999 0.92602 0.93177 1.83984 1.16506 1.69252 1.38530 1.21362 0.93535 1.35055 0.96778 0.89107 1.25276 0.94714 0.97241 0.99306 1.70047 1.02019 1.41019 1.36721 0.85663 0.79034 0.78685 0.80129 1.19148 1.20166 1.20186 1.20018 0.94471 1.05318 0.98759 1.20484 0.96409 0.95315 0.93452 1.21901 1.00210 0.95795 1.02095 1.21957 1.00746 1.00187 0.97270 1.21754 0.93825 1.01458 1.02083 0.92951 0.92005 0.92144 0.83962 0.95016 0.90667 0.88175 0.87668 0.85722 0.92133 0.86551 0.93137 0.93194 0.91694 0.92875 0.92777 0.92737 0.90712 0.93780 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 8.46 37.16 0.31 -1.38 16 2 C 0.09 0.98 1.87 -67.71 -0.13 0.85 16 3 H 0.07 0.83 7.80 -51.93 -0.40 0.42 16 4 N -0.67 -8.57 4.99 -107.99 -0.54 -9.10 16 5 C 0.11 1.51 5.61 -4.98 -0.03 1.48 16 6 C -0.05 -0.83 5.39 -104.65 -0.56 -1.39 16 7 C -0.21 -3.58 9.70 -39.53 -0.38 -3.96 16 8 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 9 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 10 C 0.15 3.73 6.65 -39.10 -0.26 3.47 16 11 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 12 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 13 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.57 13.67 55.48 0.76 -24.82 16 16 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.17 -3.56 9.64 -39.40 -0.38 -3.94 16 21 C -0.06 -0.56 0.62 -154.51 -0.10 -0.66 16 22 C -0.14 -1.40 7.85 37.16 0.29 -1.11 16 23 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 24 C -0.13 -1.55 8.32 37.16 0.31 -1.24 16 25 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 26 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 28 H 0.34 4.30 7.72 -39.29 -0.30 4.00 16 29 H 0.03 0.41 7.38 -51.93 -0.38 0.02 16 30 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 31 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 36 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.72 7.21 -51.93 -0.37 0.34 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.43 6.43 -51.92 -0.33 0.09 16 42 H 0.07 1.03 7.61 -51.92 -0.39 0.64 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -29.74 348.60 -7.82 -37.56 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.08 Total: 6.52 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -1.18 Total: -25.95 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.22 Total: -33.92 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.74 -7.82 -37.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.577 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds