Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99937 * 2 1 4 4 C 1.38728 * 120.05467 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94663 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.05215 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94141 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46769 * 90.00822 * 7 6 5 9 9 H 1.08990 * 109.47582 * 54.99611 * 8 7 6 10 10 C 1.53008 * 109.46986 * 294.99477 * 8 7 6 11 11 C 1.52999 * 109.46934 * 175.00179 * 8 7 6 12 12 N 1.46898 * 109.47251 * 185.16714 * 11 8 7 13 13 C 1.46901 * 111.00276 * 199.96697 * 12 11 8 14 14 C 1.46909 * 110.99978 * 76.01477 * 12 11 8 15 15 C 1.50703 * 109.46852 * 190.00028 * 14 12 11 16 16 H 1.08000 * 120.00404 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99492 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00374 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47014 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47128 * 119.99869 * 19 17 15 22 22 H 1.48497 * 109.47230 * 240.00054 * 19 17 15 23 23 C 1.38269 * 120.11138 * 0.28039 * 6 5 4 24 24 C 1.38144 * 120.05246 * 359.44579 * 23 6 5 25 25 H 1.09007 * 109.47150 * 300.00261 * 1 2 3 26 26 H 1.09001 * 109.47432 * 59.99604 * 1 2 3 27 27 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03188 * 359.95987 * 4 3 2 29 29 H 1.08000 * 119.97923 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47480 * 330.00087 * 7 6 5 31 31 H 1.09001 * 109.47085 * 210.00224 * 7 6 5 32 32 H 1.09006 * 109.46788 * 295.64987 * 10 8 7 33 33 H 1.08992 * 109.46727 * 55.64714 * 10 8 7 34 34 H 1.08993 * 109.47007 * 175.64757 * 10 8 7 35 35 H 1.09000 * 109.47930 * 65.16353 * 11 8 7 36 36 H 1.09008 * 109.46955 * 305.16271 * 11 8 7 37 37 H 1.08994 * 109.47184 * 291.01108 * 13 12 11 38 38 H 1.09002 * 109.46476 * 51.01477 * 13 12 11 39 39 H 1.08998 * 109.47239 * 171.00556 * 13 12 11 40 40 H 1.08994 * 109.47004 * 310.00261 * 14 12 11 41 41 H 1.08996 * 109.46938 * 70.00535 * 14 12 11 42 42 H 0.96994 * 119.99889 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.96738 * 179.70288 * 23 6 5 44 44 H 1.08004 * 120.02656 * 180.27975 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 6 4.2181 5.4714 -1.4457 9 1 3.2710 5.4657 -1.9850 10 6 5.1995 4.5165 -2.1284 11 6 4.7984 6.8871 -1.4488 12 7 4.9056 7.3693 -2.8323 13 6 5.8619 8.4802 -2.9300 14 6 3.5902 7.7593 -3.3573 15 6 3.6957 8.0123 -4.8392 16 1 4.6449 7.8947 -5.3409 17 6 2.5805 8.3939 -5.5544 18 7 1.4247 8.5376 -4.9434 19 14 2.7111 8.7068 -7.3915 20 1 4.1100 8.4783 -7.8343 21 1 1.8042 7.7813 -8.1169 22 1 2.3230 10.1101 -7.6834 23 6 1.9210 3.6048 0.0032 24 6 1.2915 2.3751 -0.0020 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3800 0.0016 29 1 5.1345 2.5751 0.0008 30 1 4.9438 4.9389 0.5115 31 1 3.3579 5.7469 0.5100 32 1 6.1700 4.5799 -1.6361 33 1 4.8222 3.4964 -2.0578 34 1 5.3053 4.7930 -3.1773 35 1 5.7873 6.8756 -0.9904 36 1 4.1433 7.5495 -0.8829 37 1 5.4523 9.3572 -2.4291 38 1 6.8000 8.1948 -2.4541 39 1 6.0429 8.7125 -3.9794 40 1 2.8743 6.9578 -3.1756 41 1 3.2539 8.6673 -2.8568 42 1 0.6403 8.8064 -5.4466 43 1 1.3342 4.5114 0.0068 44 1 0.2129 2.3202 -0.0028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090617239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -24.757527 kcal Electronic energy + Delta-G solvation = -21358.938234 eV Core-core repulsion = 18276.079420 eV Total energy + Delta-G solvation = -3082.858814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17660 -38.19831 -36.88555 -34.22044 -32.37503 -31.12616 -30.16878 -27.76208 -27.30754 -26.39179 -25.65977 -23.56643 -22.63134 -21.53853 -20.39809 -19.13216 -18.16164 -16.45167 -16.24500 -15.82139 -15.42840 -14.80190 -14.55048 -14.49352 -14.26453 -13.73735 -13.63230 -13.42641 -13.01674 -12.91828 -12.32248 -12.11185 -12.07238 -11.91980 -11.51570 -11.38541 -11.21533 -11.10476 -10.92620 -10.75441 -10.62267 -10.56271 -10.39629 -10.17496 -10.11131 -9.65233 -9.11167 -8.92725 -8.39861 -7.99971 -7.15090 -5.99890 -4.00395 1.39117 1.47819 3.20379 3.32348 3.39724 3.44769 3.79729 4.45416 4.76775 4.86926 4.90420 4.97674 5.00206 5.15745 5.28567 5.28977 5.36150 5.44429 5.46936 5.64013 5.69541 5.74416 5.88041 6.08153 6.08620 6.14493 6.14897 6.22575 6.30844 6.37503 6.40909 6.50853 6.56698 6.74104 6.76927 6.80317 6.91858 6.97972 7.35228 7.36770 7.39431 7.85268 8.15667 8.26836 8.61353 9.07945 9.63751 11.11161 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.003855 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.331812 B = 7260.754404 C = 8273.910693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.152 4.152 5 C -0.076 4.076 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.079 4.079 9 H 0.077 0.923 10 C -0.135 4.135 11 C 0.062 3.938 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.076 4.076 24 C -0.204 4.204 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.011 0.989 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.032 0.968 41 H -0.012 1.012 42 H 0.260 0.740 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -12.956 12.599 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.103 4.103 7 C -0.112 4.112 8 C -0.098 4.098 9 H 0.095 0.905 10 C -0.192 4.192 11 C -0.067 4.067 12 N -0.264 5.264 13 C -0.108 4.108 14 C 0.067 3.933 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.094 4.094 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.069 0.931 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.738 -13.478 12.267 18.307 hybrid contribution -0.799 1.057 -0.558 1.437 sum 0.939 -12.421 11.709 17.096 Atomic orbital electron populations 1.23020 0.78634 1.03635 1.01429 1.86036 1.21208 1.27235 1.89076 1.19002 0.92392 0.83985 0.97710 1.20373 0.91277 0.98554 1.06880 1.20873 0.99786 0.90924 0.97832 1.19839 0.93426 0.95485 1.01536 1.20643 0.99798 0.92770 0.97945 1.21075 1.00385 0.94691 0.93677 0.90487 1.21728 0.97540 0.97820 1.02090 1.22068 0.98782 0.94827 0.91036 1.62067 1.12747 1.34789 1.16827 1.22173 0.94515 0.92091 1.01973 1.19771 0.84129 0.94417 0.94971 1.21227 0.95387 1.44700 0.92963 0.91900 1.24984 0.95315 0.95796 0.98560 1.69969 0.99795 1.48349 1.35861 0.86481 0.78157 0.77641 0.85388 1.19664 1.21050 1.21176 1.20908 0.94217 0.97089 0.97202 1.21200 0.99866 0.92394 1.08854 0.92804 0.92574 0.88489 0.85553 0.85385 0.91376 0.91389 0.93967 0.93601 0.91189 0.92571 0.95941 0.97072 0.93929 0.91155 0.95043 0.99413 0.93084 0.85673 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.87 10.50 -19.44 -0.20 -4.08 16 3 C 0.11 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.15 -1.90 9.99 -39.43 -0.39 -2.29 16 5 C -0.08 -0.94 7.87 -39.60 -0.31 -1.25 16 6 C -0.10 -1.37 4.72 -104.60 -0.49 -1.86 16 7 C -0.07 -0.98 4.84 -27.88 -0.13 -1.12 16 8 C -0.08 -1.30 2.43 -90.62 -0.22 -1.52 16 9 H 0.08 1.51 6.67 -51.93 -0.35 1.16 16 10 C -0.13 -2.11 8.73 37.16 0.32 -1.79 16 11 C 0.06 1.10 4.39 -3.83 -0.02 1.08 16 12 N -0.54 -11.68 4.22 -244.37 -1.03 -12.72 16 13 C 0.04 0.81 9.31 60.07 0.56 1.37 16 14 C 0.19 5.04 4.55 -4.97 -0.02 5.02 16 15 C -0.50 -14.29 8.58 -34.44 -0.30 -14.58 16 16 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.08 -1.02 9.69 -39.60 -0.38 -1.40 16 24 C -0.20 -2.58 9.04 -39.43 -0.36 -2.94 16 25 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 26 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.35 7.99 -52.49 -0.42 0.93 16 30 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.67 5.96 -51.93 -0.31 0.36 16 34 H 0.07 1.28 7.88 -51.93 -0.41 0.87 16 35 H 0.06 0.89 7.74 -51.93 -0.40 0.49 16 36 H 0.02 0.41 8.00 -51.92 -0.42 0.00 16 37 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 38 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.07 1.46 7.01 -51.93 -0.36 1.10 16 40 H 0.03 0.88 6.58 -51.93 -0.34 0.54 16 41 H -0.01 -0.34 8.07 -51.93 -0.42 -0.76 16 42 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.12 1.32 6.30 -52.48 -0.33 0.99 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -31.12 352.40 -8.74 -39.86 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.42 Total: -1.61 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.11 Total: -17.39 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.30 Total: -38.92 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.12 -8.74 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090617239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.102 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds