Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99937 * 2 1 4 4 C 1.38728 * 120.05467 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94663 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.05215 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94141 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46769 * 90.00822 * 7 6 5 9 9 H 1.08990 * 109.47582 * 54.99611 * 8 7 6 10 10 C 1.53008 * 109.46986 * 294.99477 * 8 7 6 11 11 C 1.52999 * 109.46934 * 175.00179 * 8 7 6 12 12 N 1.46898 * 109.47251 * 185.16714 * 11 8 7 13 13 C 1.46901 * 111.00276 * 199.96697 * 12 11 8 14 14 C 1.46909 * 110.99978 * 76.01477 * 12 11 8 15 15 C 1.50703 * 109.46852 * 190.00028 * 14 12 11 16 16 H 1.08000 * 120.00404 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99492 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00374 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47014 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47128 * 119.99869 * 19 17 15 22 22 H 1.48497 * 109.47230 * 240.00054 * 19 17 15 23 23 C 1.38269 * 120.11138 * 0.28039 * 6 5 4 24 24 C 1.38144 * 120.05246 * 359.44579 * 23 6 5 25 25 H 1.09007 * 109.47150 * 300.00261 * 1 2 3 26 26 H 1.09001 * 109.47432 * 59.99604 * 1 2 3 27 27 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03188 * 359.95987 * 4 3 2 29 29 H 1.08000 * 119.97923 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47480 * 330.00087 * 7 6 5 31 31 H 1.09001 * 109.47085 * 210.00224 * 7 6 5 32 32 H 1.09006 * 109.46788 * 295.64987 * 10 8 7 33 33 H 1.08992 * 109.46727 * 55.64714 * 10 8 7 34 34 H 1.08993 * 109.47007 * 175.64757 * 10 8 7 35 35 H 1.09000 * 109.47930 * 65.16353 * 11 8 7 36 36 H 1.09008 * 109.46955 * 305.16271 * 11 8 7 37 37 H 1.08994 * 109.47184 * 291.01108 * 13 12 11 38 38 H 1.09002 * 109.46476 * 51.01477 * 13 12 11 39 39 H 1.08998 * 109.47239 * 171.00556 * 13 12 11 40 40 H 1.08994 * 109.47004 * 310.00261 * 14 12 11 41 41 H 1.08996 * 109.46938 * 70.00535 * 14 12 11 42 42 H 0.96994 * 119.99889 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.96738 * 179.70288 * 23 6 5 44 44 H 1.08004 * 120.02656 * 180.27975 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 6 4.2181 5.4714 -1.4457 9 1 3.2710 5.4657 -1.9850 10 6 5.1995 4.5165 -2.1284 11 6 4.7984 6.8871 -1.4488 12 7 4.9056 7.3693 -2.8323 13 6 5.8619 8.4802 -2.9300 14 6 3.5902 7.7593 -3.3573 15 6 3.6957 8.0123 -4.8392 16 1 4.6449 7.8947 -5.3409 17 6 2.5805 8.3939 -5.5544 18 7 1.4247 8.5376 -4.9434 19 14 2.7111 8.7068 -7.3915 20 1 4.1100 8.4783 -7.8343 21 1 1.8042 7.7813 -8.1169 22 1 2.3230 10.1101 -7.6834 23 6 1.9210 3.6048 0.0032 24 6 1.2915 2.3751 -0.0020 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3800 0.0016 29 1 5.1345 2.5751 0.0008 30 1 4.9438 4.9389 0.5115 31 1 3.3579 5.7469 0.5100 32 1 6.1700 4.5799 -1.6361 33 1 4.8222 3.4964 -2.0578 34 1 5.3053 4.7930 -3.1773 35 1 5.7873 6.8756 -0.9904 36 1 4.1433 7.5495 -0.8829 37 1 5.4523 9.3572 -2.4291 38 1 6.8000 8.1948 -2.4541 39 1 6.0429 8.7125 -3.9794 40 1 2.8743 6.9578 -3.1756 41 1 3.2539 8.6673 -2.8568 42 1 0.6403 8.8064 -5.4466 43 1 1.3342 4.5114 0.0068 44 1 0.2129 2.3202 -0.0028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090617239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -42.666083 kcal Electronic energy + Delta-G solvation = -21359.714807 eV Core-core repulsion = 18276.079420 eV Total energy + Delta-G solvation = -3083.635387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10712 -39.35535 -38.27273 -35.67676 -34.42217 -32.08458 -31.28811 -29.36988 -28.55614 -27.80889 -26.81135 -25.40862 -23.65215 -22.87666 -21.73458 -20.56387 -19.05859 -18.56977 -17.21077 -16.78279 -16.63528 -16.53905 -15.99265 -15.82326 -15.53378 -15.11731 -14.88577 -14.51088 -14.38983 -14.21959 -13.91465 -13.41037 -13.33826 -13.11857 -12.93821 -12.80426 -12.55760 -12.52032 -12.48791 -12.32890 -12.15216 -11.94553 -11.72853 -11.54824 -11.51673 -11.28006 -11.13500 -10.59954 -9.89808 -8.98717 -8.93167 -8.20125 -6.29618 0.42579 0.48333 1.39562 1.40318 1.53916 2.40185 2.40527 2.80407 3.12481 3.41382 3.85871 3.89722 3.99555 4.09053 4.29071 4.36905 4.38061 4.39905 4.49015 4.50675 4.60333 4.66485 4.73059 4.74504 4.75970 4.81126 4.95744 4.99109 5.07500 5.11310 5.16018 5.23211 5.24270 5.34925 5.38421 5.44376 5.53964 5.62380 5.67986 5.80135 5.87552 6.09345 6.39454 6.46592 6.70939 6.87853 7.40208 8.91281 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.003855 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.331812 B = 7260.754404 C = 8273.910693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.105 3.895 4 C -0.161 4.161 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.063 4.063 8 C -0.074 4.074 9 H 0.034 0.966 10 C -0.126 4.126 11 C 0.061 3.939 12 N -0.547 5.547 13 C 0.042 3.958 14 C 0.211 3.789 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.278 1.278 23 C -0.094 4.094 24 C -0.212 4.212 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.013 0.987 37 H 0.005 0.995 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.005 0.995 41 H -0.045 1.045 42 H 0.263 0.737 43 H 0.121 0.879 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -13.952 12.821 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.060 3.940 4 C -0.179 4.179 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.101 4.101 8 C -0.093 4.093 9 H 0.052 0.948 10 C -0.183 4.183 11 C -0.067 4.067 12 N -0.271 5.271 13 C -0.106 4.106 14 C 0.084 3.916 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.112 4.112 24 C -0.231 4.231 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.031 0.969 37 H 0.024 0.976 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.023 0.977 41 H -0.027 1.027 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.223 -14.480 12.502 19.400 hybrid contribution -1.290 1.314 -0.570 1.928 sum 1.932 -13.166 11.932 17.873 Atomic orbital electron populations 1.23293 0.76852 1.05458 1.01901 1.86020 1.23125 1.26815 1.88926 1.19225 0.92940 0.84364 0.97513 1.20673 0.91422 0.99337 1.06487 1.21104 1.00827 0.90370 0.96921 1.19915 0.93466 0.95869 1.02432 1.20533 1.01148 0.92750 0.95647 1.20975 0.98417 0.94354 0.95538 0.94778 1.21638 0.98613 0.97872 1.00188 1.22206 1.00530 0.95144 0.88834 1.61995 1.10451 1.35242 1.19374 1.22206 0.95539 0.91439 1.01436 1.19371 0.86073 0.91839 0.94273 1.21537 0.95489 1.44824 0.94110 0.91990 1.25908 0.94834 0.95330 1.03645 1.70098 1.00613 1.49041 1.37911 0.85367 0.78560 0.77733 0.79174 1.18662 1.20493 1.20354 1.21059 0.94774 0.97429 0.97975 1.21377 1.00788 0.92155 1.08772 0.91847 0.92568 0.86078 0.83951 0.83207 0.88771 0.91538 0.91327 0.92754 0.94338 0.89206 0.96861 0.97614 0.89927 0.92725 0.97738 1.02692 0.92796 0.86065 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.69 10.50 -92.49 -0.97 -8.66 16 3 C 0.10 2.62 6.69 22.50 0.15 2.77 16 4 C -0.16 -3.76 9.99 22.36 0.22 -3.54 16 5 C -0.07 -1.70 7.87 22.26 0.18 -1.52 16 6 C -0.12 -3.02 4.72 -19.85 -0.09 -3.11 16 7 C -0.06 -1.60 4.84 29.85 0.14 -1.46 16 8 C -0.07 -2.41 2.43 -10.79 -0.03 -2.44 16 9 H 0.03 1.40 6.67 -2.39 -0.02 1.38 16 10 C -0.13 -3.79 8.73 71.98 0.63 -3.16 16 11 C 0.06 2.13 4.39 86.30 0.38 2.51 16 12 N -0.55 -23.79 4.22 -927.04 -3.91 -27.71 16 13 C 0.04 1.62 9.31 127.69 1.19 2.81 16 14 C 0.21 11.51 4.55 85.56 0.39 11.90 16 15 C -0.52 -30.23 8.58 25.60 0.22 -30.01 16 16 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 19 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C -0.09 -2.56 9.69 22.25 0.22 -2.34 16 24 C -0.21 -5.33 9.04 22.36 0.20 -5.12 16 25 H 0.06 0.84 7.67 -2.38 -0.02 0.82 16 26 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 27 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.15 2.68 7.99 -2.91 -0.02 2.66 16 30 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 31 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.05 1.52 5.96 -2.39 -0.01 1.51 16 34 H 0.04 1.39 7.88 -2.39 -0.02 1.37 16 35 H 0.09 2.56 7.74 -2.39 -0.02 2.54 16 36 H 0.01 0.49 8.00 -2.38 -0.02 0.47 16 37 H 0.01 0.21 8.08 -2.39 -0.02 0.19 16 38 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 39 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16 40 H 0.00 0.27 6.58 -2.39 -0.02 0.25 16 41 H -0.04 -2.66 8.07 -2.39 -0.02 -2.68 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.14 2.91 6.30 -2.91 -0.02 2.89 16 Total: -1.00 -68.62 352.40 3.75 -64.88 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.95 Total: 12.33 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.37 Total: -30.81 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -3.63 Total: -84.87 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.97 Total: -8.66 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.62 3.75 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090617239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.210 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds