Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35896 * 117.00205 * 2 1 4 4 C 1.38738 * 120.05342 * 359.72425 * 3 2 1 5 5 C 1.38142 * 119.94080 * 179.76799 * 4 3 2 6 6 C 1.38273 * 120.05811 * 0.51251 * 5 4 3 7 7 C 1.50696 * 119.94708 * 179.76629 * 6 5 4 8 8 C 1.52995 * 109.47126 * 269.97852 * 7 6 5 9 9 H 1.09004 * 109.47227 * 304.99826 * 8 7 6 10 10 C 1.52998 * 109.47400 * 64.99693 * 8 7 6 11 11 C 1.52999 * 109.47149 * 184.99884 * 8 7 6 12 12 N 1.46901 * 109.47080 * 65.20242 * 11 8 7 13 13 C 1.46902 * 111.00147 * 75.82179 * 12 11 8 14 14 C 1.46905 * 111.00283 * 199.77579 * 12 11 8 15 15 C 1.50700 * 109.47409 * 170.00011 * 14 12 11 16 16 H 1.07999 * 119.99626 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99822 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99738 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47471 * 119.99720 * 19 17 15 22 22 H 1.48500 * 109.46926 * 239.99621 * 19 17 15 23 23 C 1.38265 * 120.10549 * 359.73974 * 6 5 4 24 24 C 1.38142 * 120.06146 * 0.02562 * 23 6 5 25 25 H 1.08995 * 109.46770 * 299.99862 * 1 2 3 26 26 H 1.09000 * 109.47045 * 59.99869 * 1 2 3 27 27 H 1.08993 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.02786 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.97151 * 180.25322 * 5 4 3 30 30 H 1.09003 * 109.46825 * 29.97444 * 7 6 5 31 31 H 1.08999 * 109.46914 * 149.97608 * 7 6 5 32 32 H 1.09007 * 109.47261 * 173.78529 * 10 8 7 33 33 H 1.08993 * 109.47453 * 293.79424 * 10 8 7 34 34 H 1.09006 * 109.46960 * 53.79043 * 10 8 7 35 35 H 1.08996 * 109.47147 * 185.20086 * 11 8 7 36 36 H 1.08998 * 109.47490 * 305.20462 * 11 8 7 37 37 H 1.09003 * 109.47082 * 54.91123 * 13 12 11 38 38 H 1.09000 * 109.47513 * 174.91469 * 13 12 11 39 39 H 1.09000 * 109.46918 * 294.91841 * 13 12 11 40 40 H 1.09006 * 109.46877 * 290.00137 * 14 12 11 41 41 H 1.09001 * 109.46602 * 49.99886 * 14 12 11 42 42 H 0.96995 * 120.00312 * 179.97438 * 18 17 15 43 43 H 1.08006 * 119.96671 * 179.97438 * 23 6 5 44 44 H 1.08000 * 120.02781 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0058 5 6 1.9212 3.6047 -0.0009 6 6 3.3021 3.6757 -0.0010 7 6 3.9863 5.0184 -0.0010 8 6 4.2182 5.4726 -1.4435 9 1 4.7711 4.7031 -1.9823 10 6 2.8699 5.7054 -2.1280 11 6 5.0225 6.7741 -1.4453 12 7 6.3636 6.5218 -0.9014 13 6 7.2093 5.8318 -1.8846 14 6 6.9924 7.7705 -0.4503 15 6 8.2486 7.4513 0.3185 16 1 8.5495 6.4235 0.4584 17 6 9.0131 8.4712 0.8440 18 7 8.6464 9.7226 0.6740 19 14 10.5706 8.0755 1.7963 20 1 10.7606 6.6036 1.8450 21 1 11.7356 8.7034 1.1228 22 1 10.4535 8.6051 3.1787 23 6 4.0562 2.5168 -0.0005 24 6 3.4314 1.2847 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2130 2.3201 -0.0099 29 1 1.3343 4.5114 -0.0013 30 1 3.3581 5.7463 0.5125 31 1 4.9441 4.9381 0.5131 32 1 3.0335 6.1334 -3.1170 33 1 2.3432 4.7561 -2.2255 34 1 2.2722 6.3926 -1.5291 35 1 5.1087 7.1466 -2.4660 36 1 4.5144 7.5162 -0.8294 37 1 7.2315 6.4057 -2.8110 38 1 8.2214 5.7377 -1.4910 39 1 6.8023 4.8400 -2.0814 40 1 7.2421 8.3847 -1.3156 41 1 6.3005 8.3137 0.1934 42 1 9.1840 10.4401 1.0441 43 1 5.1347 2.5749 -0.0010 44 1 4.0209 0.3798 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090617240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -25.389578 kcal Electronic energy + Delta-G solvation = -21282.968048 eV Core-core repulsion = 18200.081827 eV Total energy + Delta-G solvation = -3082.886222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20325 -38.23648 -36.88920 -34.29038 -32.34229 -31.07271 -30.41651 -27.75526 -27.29135 -26.49527 -25.68222 -23.70282 -22.58816 -21.37060 -20.45828 -19.31957 -18.19809 -16.32598 -16.25485 -15.87703 -15.60413 -14.97262 -14.52351 -14.41134 -14.12783 -13.89208 -13.67398 -13.41472 -13.22540 -12.80653 -12.38985 -12.32213 -12.00395 -11.89369 -11.72571 -11.44804 -11.23091 -11.07961 -10.86668 -10.78864 -10.75921 -10.57368 -10.39820 -10.28934 -10.13934 -9.72995 -9.12460 -8.95906 -8.42286 -8.01780 -7.17207 -6.00694 -4.01626 1.37091 1.46768 3.15965 3.32185 3.39678 3.44532 3.79186 4.44398 4.71118 4.84658 4.90701 4.93032 4.98619 5.03417 5.20696 5.27482 5.34822 5.40742 5.45704 5.51086 5.63444 5.72474 5.90705 5.95051 6.03505 6.09608 6.15897 6.24703 6.26895 6.31502 6.33858 6.45465 6.47289 6.58370 6.70498 6.80136 6.84870 6.93608 7.33132 7.33894 7.39593 7.83735 8.12910 8.25202 8.59644 9.06778 9.62608 11.10293 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003297 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.641178 B = 8489.438975 C = 9051.615402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.110 3.890 4 C -0.209 4.209 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.068 4.068 8 C -0.077 4.077 9 H 0.067 0.933 10 C -0.147 4.147 11 C 0.058 3.942 12 N -0.539 5.539 13 C 0.036 3.964 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.076 4.076 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.008 0.992 38 H 0.074 0.926 39 H 0.044 0.956 40 H -0.011 1.011 41 H 0.029 0.971 42 H 0.260 0.740 43 H 0.132 0.868 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 -15.016 -3.463 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.227 4.227 5 C -0.099 4.099 6 C -0.100 4.100 7 C -0.106 4.106 8 C -0.096 4.096 9 H 0.086 0.914 10 C -0.205 4.205 11 C -0.070 4.070 12 N -0.263 5.263 13 C -0.112 4.112 14 C 0.067 3.933 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.094 4.094 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.006 0.994 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.150 0.850 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.121 -15.323 -3.007 22.444 hybrid contribution 0.612 0.643 -0.207 0.911 sum -15.509 -14.680 -3.214 21.596 Atomic orbital electron populations 1.22996 0.78795 1.03582 1.01236 1.86046 1.21063 1.27323 1.89156 1.18999 0.92393 0.83926 0.98116 1.21168 0.99608 0.92497 1.09453 1.20882 0.94256 0.96711 0.98014 1.20057 0.93298 0.96084 1.00606 1.20584 1.01303 0.91552 0.97130 1.21068 0.95194 0.97940 0.95377 0.91442 1.21888 0.97391 1.01141 1.00084 1.22137 0.91709 0.95799 0.97404 1.62046 1.01183 1.26800 1.36230 1.22252 0.99026 0.96823 0.93129 1.19743 0.94323 0.84837 0.94420 1.21214 1.06835 0.93137 1.33105 0.91800 1.24993 0.98162 0.94970 0.96590 1.69966 1.39131 0.98725 1.46125 0.86466 0.82977 0.78499 0.79630 1.19642 1.21183 1.21051 1.20990 1.00292 0.90855 0.97308 1.20421 0.91228 0.98684 1.06529 0.92807 0.92836 0.88535 0.85975 0.85992 0.91710 0.88877 0.93215 0.92790 0.92926 0.95899 0.91634 0.97375 0.90731 0.93677 0.99362 0.95313 0.93038 0.85023 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.64 10.50 -19.41 -0.20 -3.85 16 3 C 0.11 1.35 6.69 -39.22 -0.26 1.08 16 4 C -0.21 -2.34 9.04 -39.43 -0.36 -2.69 16 5 C -0.08 -0.95 8.12 -39.60 -0.32 -1.27 16 6 C -0.10 -1.31 4.72 -104.60 -0.49 -1.81 16 7 C -0.07 -0.98 4.78 -27.89 -0.13 -1.12 16 8 C -0.08 -1.11 2.43 -90.62 -0.22 -1.33 16 9 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 10 C -0.15 -1.80 8.56 37.16 0.32 -1.48 16 11 C 0.06 1.03 4.39 -3.82 -0.02 1.02 16 12 N -0.54 -11.39 4.06 -244.36 -0.99 -12.38 16 13 C 0.04 0.71 9.26 60.07 0.56 1.26 16 14 C 0.19 4.99 4.70 -4.97 -0.02 4.97 16 15 C -0.50 -14.11 8.38 -34.44 -0.29 -14.40 16 16 H 0.06 1.77 7.17 -52.49 -0.38 1.39 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.08 -0.99 9.69 -39.61 -0.38 -1.37 16 24 C -0.15 -1.87 9.99 -39.43 -0.39 -2.26 16 25 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 29 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 30 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 36 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 37 H 0.01 0.15 7.98 -51.93 -0.41 -0.26 16 38 H 0.07 1.56 6.66 -51.93 -0.35 1.22 16 39 H 0.04 0.75 6.97 -51.93 -0.36 0.39 16 40 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 41 H 0.03 0.80 7.83 -51.93 -0.41 0.39 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -30.50 352.80 -8.74 -39.24 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.45 Total: -2.11 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.13 Total: -16.77 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.26 Total: -38.48 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.50 -8.74 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090617240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.851 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds