Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35896 * 117.00205 * 2 1 4 4 C 1.38738 * 120.05342 * 359.72425 * 3 2 1 5 5 C 1.38142 * 119.94080 * 179.76799 * 4 3 2 6 6 C 1.38273 * 120.05811 * 0.51251 * 5 4 3 7 7 C 1.50696 * 119.94708 * 179.76629 * 6 5 4 8 8 C 1.52995 * 109.47126 * 269.97852 * 7 6 5 9 9 H 1.09004 * 109.47227 * 304.99826 * 8 7 6 10 10 C 1.52998 * 109.47400 * 64.99693 * 8 7 6 11 11 C 1.52999 * 109.47149 * 184.99884 * 8 7 6 12 12 N 1.46901 * 109.47080 * 65.20242 * 11 8 7 13 13 C 1.46902 * 111.00147 * 75.82179 * 12 11 8 14 14 C 1.46905 * 111.00283 * 199.77579 * 12 11 8 15 15 C 1.50700 * 109.47409 * 170.00011 * 14 12 11 16 16 H 1.07999 * 119.99626 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99822 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99738 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47471 * 119.99720 * 19 17 15 22 22 H 1.48500 * 109.46926 * 239.99621 * 19 17 15 23 23 C 1.38265 * 120.10549 * 359.73974 * 6 5 4 24 24 C 1.38142 * 120.06146 * 0.02562 * 23 6 5 25 25 H 1.08995 * 109.46770 * 299.99862 * 1 2 3 26 26 H 1.09000 * 109.47045 * 59.99869 * 1 2 3 27 27 H 1.08993 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.02786 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.97151 * 180.25322 * 5 4 3 30 30 H 1.09003 * 109.46825 * 29.97444 * 7 6 5 31 31 H 1.08999 * 109.46914 * 149.97608 * 7 6 5 32 32 H 1.09007 * 109.47261 * 173.78529 * 10 8 7 33 33 H 1.08993 * 109.47453 * 293.79424 * 10 8 7 34 34 H 1.09006 * 109.46960 * 53.79043 * 10 8 7 35 35 H 1.08996 * 109.47147 * 185.20086 * 11 8 7 36 36 H 1.08998 * 109.47490 * 305.20462 * 11 8 7 37 37 H 1.09003 * 109.47082 * 54.91123 * 13 12 11 38 38 H 1.09000 * 109.47513 * 174.91469 * 13 12 11 39 39 H 1.09000 * 109.46918 * 294.91841 * 13 12 11 40 40 H 1.09006 * 109.46877 * 290.00137 * 14 12 11 41 41 H 1.09001 * 109.46602 * 49.99886 * 14 12 11 42 42 H 0.96995 * 120.00312 * 179.97438 * 18 17 15 43 43 H 1.08006 * 119.96671 * 179.97438 * 23 6 5 44 44 H 1.08000 * 120.02781 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0058 5 6 1.9212 3.6047 -0.0009 6 6 3.3021 3.6757 -0.0010 7 6 3.9863 5.0184 -0.0010 8 6 4.2182 5.4726 -1.4435 9 1 4.7711 4.7031 -1.9823 10 6 2.8699 5.7054 -2.1280 11 6 5.0225 6.7741 -1.4453 12 7 6.3636 6.5218 -0.9014 13 6 7.2093 5.8318 -1.8846 14 6 6.9924 7.7705 -0.4503 15 6 8.2486 7.4513 0.3185 16 1 8.5495 6.4235 0.4584 17 6 9.0131 8.4712 0.8440 18 7 8.6464 9.7226 0.6740 19 14 10.5706 8.0755 1.7963 20 1 10.7606 6.6036 1.8450 21 1 11.7356 8.7034 1.1228 22 1 10.4535 8.6051 3.1787 23 6 4.0562 2.5168 -0.0005 24 6 3.4314 1.2847 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2130 2.3201 -0.0099 29 1 1.3343 4.5114 -0.0013 30 1 3.3581 5.7463 0.5125 31 1 4.9441 4.9381 0.5131 32 1 3.0335 6.1334 -3.1170 33 1 2.3432 4.7561 -2.2255 34 1 2.2722 6.3926 -1.5291 35 1 5.1087 7.1466 -2.4660 36 1 4.5144 7.5162 -0.8294 37 1 7.2315 6.4057 -2.8110 38 1 8.2214 5.7377 -1.4910 39 1 6.8023 4.8400 -2.0814 40 1 7.2421 8.3847 -1.3156 41 1 6.3005 8.3137 0.1934 42 1 9.1840 10.4401 1.0441 43 1 5.1347 2.5749 -0.0010 44 1 4.0209 0.3798 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090617240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -42.403487 kcal Electronic energy + Delta-G solvation = -21283.705827 eV Core-core repulsion = 18200.081827 eV Total energy + Delta-G solvation = -3083.624000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07437 -39.35574 -38.21557 -35.74443 -34.34032 -31.97528 -31.45465 -29.29394 -28.42473 -27.91579 -26.79369 -25.47113 -23.48755 -22.63020 -21.98588 -20.58424 -19.01335 -18.46959 -17.11474 -16.83977 -16.64280 -16.58434 -16.09043 -15.76390 -15.36308 -15.17748 -14.72515 -14.59146 -14.30902 -14.19076 -13.75278 -13.58153 -13.34434 -13.09066 -12.87767 -12.73630 -12.73377 -12.53520 -12.43539 -12.29073 -12.13258 -11.92034 -11.70256 -11.62916 -11.48419 -11.33760 -11.04768 -10.61236 -9.87529 -9.02500 -8.86239 -8.19097 -6.28656 0.45945 0.52762 1.41340 1.42141 1.55699 2.41370 2.44167 2.85579 3.13481 3.39253 3.86641 3.93069 4.01647 4.13193 4.27861 4.37225 4.42302 4.42503 4.54345 4.54941 4.59469 4.66317 4.72872 4.74458 4.81626 4.85159 4.89534 4.98984 5.11084 5.13798 5.17932 5.22659 5.26411 5.33619 5.39770 5.48681 5.49057 5.55781 5.68070 5.87058 5.92665 6.08283 6.37611 6.51827 6.69273 6.88672 7.41088 8.92264 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003297 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.641178 B = 8489.438975 C = 9051.615402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.105 3.895 4 C -0.206 4.206 5 C -0.080 4.080 6 C -0.113 4.113 7 C -0.060 4.060 8 C -0.066 4.066 9 H 0.065 0.935 10 C -0.140 4.140 11 C 0.059 3.941 12 N -0.542 5.542 13 C 0.040 3.960 14 C 0.207 3.793 15 C -0.519 4.519 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.087 4.087 24 C -0.162 4.162 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.009 0.991 38 H 0.056 0.944 39 H 0.076 0.924 40 H -0.042 1.042 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -16.633 -3.513 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.060 3.940 4 C -0.225 4.225 5 C -0.098 4.098 6 C -0.113 4.113 7 C -0.098 4.098 8 C -0.085 4.085 9 H 0.083 0.917 10 C -0.198 4.198 11 C -0.069 4.069 12 N -0.266 5.266 13 C -0.108 4.108 14 C 0.081 3.919 15 C -0.557 4.557 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.105 4.105 24 C -0.181 4.181 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.095 0.905 40 H -0.024 1.024 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.379 -16.964 -3.069 24.479 hybrid contribution 0.896 1.089 -0.216 1.427 sum -16.483 -15.875 -3.285 23.119 Atomic orbital electron populations 1.23310 0.76640 1.05410 1.02165 1.86031 1.23342 1.26959 1.88948 1.19168 0.92490 0.84738 0.97604 1.21430 1.00934 0.91753 1.08363 1.21060 0.93690 0.97756 0.97310 1.19941 0.94032 0.95115 1.02198 1.20419 1.00059 0.92674 0.96637 1.20969 0.95996 0.95672 0.95877 0.91652 1.21819 0.95839 1.02012 1.00090 1.22230 0.90105 0.97712 0.96899 1.61993 1.02560 1.24263 1.37746 1.22239 0.98042 0.98148 0.92382 1.19398 0.93606 0.86234 0.92689 1.21509 1.07654 0.93207 1.33342 0.91811 1.25912 1.01645 0.94719 0.97521 1.70090 1.40663 0.99790 1.47161 0.85349 0.78595 0.78712 0.78062 1.18656 1.20498 1.20472 1.21024 1.00315 0.91248 0.97874 1.20560 0.91939 0.98721 1.06875 0.91888 0.91778 0.86462 0.83404 0.84371 0.91636 0.91710 0.92736 0.91634 0.92116 0.95747 0.92548 0.97285 0.92543 0.90537 1.02428 0.97900 0.92758 0.85359 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.97 10.50 -92.39 -0.97 -7.94 16 3 C 0.10 2.37 6.69 22.51 0.15 2.52 16 4 C -0.21 -4.08 9.04 22.37 0.20 -3.88 16 5 C -0.08 -1.72 8.12 22.26 0.18 -1.54 16 6 C -0.11 -2.84 4.72 -19.85 -0.09 -2.93 16 7 C -0.06 -1.72 4.78 29.85 0.14 -1.58 16 8 C -0.07 -1.86 2.43 -10.80 -0.03 -1.88 16 9 H 0.07 1.87 6.87 -2.38 -0.02 1.86 16 10 C -0.14 -3.13 8.56 71.98 0.62 -2.51 16 11 C 0.06 2.09 4.39 86.30 0.38 2.47 16 12 N -0.54 -23.38 4.06 -927.02 -3.77 -27.15 16 13 C 0.04 1.57 9.26 127.69 1.18 2.75 16 14 C 0.21 11.19 4.70 85.56 0.40 11.59 16 15 C -0.52 -29.65 8.38 25.60 0.21 -29.44 16 16 H 0.06 3.57 7.17 -2.91 -0.02 3.55 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 18 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 19 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.09 -2.20 9.69 22.25 0.22 -1.98 16 24 C -0.16 -3.90 9.99 22.36 0.22 -3.67 16 25 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 26 H 0.06 0.61 7.65 -2.39 -0.02 0.59 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 29 H 0.14 2.46 8.04 -2.91 -0.02 2.44 16 30 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 31 H 0.06 2.20 7.57 -2.39 -0.02 2.19 16 32 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.34 6.69 -2.39 -0.02 1.33 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.02 0.86 7.88 -2.39 -0.02 0.84 16 36 H 0.06 2.09 7.73 -2.39 -0.02 2.07 16 37 H 0.01 0.33 7.98 -2.39 -0.02 0.32 16 38 H 0.06 2.38 6.66 -2.39 -0.02 2.37 16 39 H 0.08 2.48 6.97 -2.39 -0.02 2.47 16 40 H -0.04 -2.48 8.12 -2.38 -0.02 -2.49 16 41 H 0.00 0.17 7.83 -2.39 -0.02 0.15 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -66.25 352.80 3.89 -62.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.95 Total: 10.99 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.36 Total: -28.30 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.48 Total: -83.85 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.97 Total: -7.94 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.25 3.89 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090617240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.955 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds