Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 H 1.09000 * 109.47285 * 54.23347 * 3 2 1 5 5 C 1.52998 * 109.47158 * 174.23999 * 3 2 1 6 6 O 1.42903 * 109.47245 * 54.99896 * 5 3 2 7 7 C 1.42897 * 114.00089 * 180.02562 * 6 5 3 8 8 N 1.46908 * 109.46794 * 294.23757 * 3 2 1 9 9 C 1.46901 * 110.99834 * 155.25223 * 8 3 2 10 10 H 1.08999 * 109.47106 * 35.75955 * 9 8 3 11 11 C 1.53004 * 109.46768 * 155.75464 * 9 8 3 12 12 C 1.50696 * 109.47369 * 295.00277 * 11 9 8 13 13 H 1.07998 * 119.99975 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99905 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99757 * 179.72360 * 14 12 11 16 16 Si 1.86800 * 120.00175 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46935 * 89.99895 * 16 14 12 18 18 H 1.48492 * 109.47466 * 209.99902 * 16 14 12 19 19 H 1.48506 * 109.47090 * 330.00220 * 16 14 12 20 20 C 1.50699 * 109.47165 * 275.75569 * 9 8 3 21 21 C 1.38231 * 120.00257 * 312.94867 * 20 9 8 22 22 C 1.38230 * 120.00028 * 179.79121 * 21 20 9 23 23 C 1.38240 * 120.00037 * 0.43392 * 22 21 20 24 24 C 1.38237 * 119.99863 * 359.81910 * 23 22 21 25 25 C 1.38234 * 119.99601 * 133.22167 * 20 9 8 26 26 H 1.09000 * 109.46630 * 185.46938 * 1 2 3 27 27 H 1.09001 * 109.47468 * 305.46804 * 1 2 3 28 28 H 1.08999 * 109.47305 * 65.47520 * 1 2 3 29 29 H 1.08994 * 109.47475 * 240.00107 * 2 1 3 30 30 H 1.09001 * 109.47036 * 119.99433 * 2 1 3 31 31 H 1.08999 * 109.46881 * 174.99378 * 5 3 2 32 32 H 1.08998 * 109.47080 * 294.99860 * 5 3 2 33 33 H 1.09004 * 109.46896 * 299.99993 * 7 6 5 34 34 H 1.09005 * 109.47160 * 59.99404 * 7 6 5 35 35 H 1.08999 * 109.47034 * 180.02562 * 7 6 5 36 36 H 1.00899 * 110.99750 * 31.30015 * 8 3 2 37 37 H 1.09001 * 109.46578 * 174.99759 * 11 9 8 38 38 H 1.08997 * 109.47038 * 55.00408 * 11 9 8 39 39 H 0.96999 * 119.99658 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99713 * 359.97438 * 21 20 9 41 41 H 1.08001 * 120.00247 * 180.27587 * 22 21 20 42 42 H 1.07999 * 119.99885 * 179.83641 * 23 22 21 43 43 H 1.07993 * 120.00030 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00372 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5947 1.9853 0.8338 5 6 3.5631 1.4451 0.1448 6 8 4.1405 0.6366 -0.8824 7 6 5.5673 0.5707 -0.8370 8 7 1.6670 2.0937 -1.2630 9 6 1.5919 3.5518 -1.1014 10 1 2.3639 3.8806 -0.4057 11 6 1.8064 4.2270 -2.4575 12 6 3.2070 3.9510 -2.9402 13 1 3.8774 3.3541 -2.3395 14 6 3.6331 4.4613 -4.1481 15 7 4.8572 4.2250 -4.5667 16 14 2.4739 5.4943 -5.1867 17 1 2.6172 6.9247 -4.8142 18 1 2.8085 5.3208 -6.6230 19 1 1.0743 5.0585 -4.9483 20 6 0.2361 3.9282 -0.5617 21 6 -0.9058 3.3891 -1.1241 22 6 -2.1491 3.7310 -0.6262 23 6 -2.2511 4.6190 0.4283 24 6 -1.1095 5.1622 0.9874 25 6 0.1341 4.8169 0.4922 26 1 -0.3632 -1.0230 0.0980 27 1 -0.3634 0.5963 0.8370 28 1 -0.3634 0.4266 -0.9349 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9348 2.4658 0.0557 32 1 3.8360 1.0428 1.1203 33 1 5.9809 1.5733 -0.9461 34 1 5.8814 0.1501 0.1183 35 1 5.9278 -0.0610 -1.6488 36 1 0.7978 1.7239 -1.6175 37 1 1.6628 5.3026 -2.3546 38 1 1.0896 3.8320 -3.1774 39 1 5.1568 4.5837 -5.4166 40 1 -0.8263 2.6985 -1.9506 41 1 -3.0411 3.3064 -1.0627 42 1 -3.2227 4.8882 0.8156 43 1 -1.1891 5.8562 1.8109 44 1 1.0261 5.2412 0.9291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -26.984319 kcal Electronic energy + Delta-G solvation = -22555.997523 eV Core-core repulsion = 19473.042148 eV Total energy + Delta-G solvation = -3082.955375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.46726 -37.83838 -36.06378 -33.92838 -32.16656 -30.71690 -30.15739 -29.13720 -28.01680 -25.58464 -24.42854 -23.08046 -22.39692 -21.64944 -19.85078 -19.55237 -17.15588 -16.30956 -16.11129 -15.44992 -15.09764 -14.84595 -14.66028 -14.45311 -14.10261 -13.89207 -13.24737 -13.15442 -12.96590 -12.74190 -12.48977 -12.34989 -12.25230 -11.75728 -11.53875 -11.25045 -11.14098 -10.96699 -10.88588 -10.70829 -10.57468 -10.29235 -10.10565 -9.92871 -9.61446 -9.03811 -8.94309 -8.71156 -8.36365 -8.35648 -7.61401 -5.84730 -3.77650 1.60351 1.60930 3.39779 3.47643 3.51569 4.01876 4.38722 4.60106 4.74945 5.05833 5.10318 5.12543 5.20530 5.26841 5.36109 5.37076 5.49759 5.65697 5.73397 5.73995 5.80150 5.82485 5.85503 5.96430 6.03190 6.04093 6.12243 6.21472 6.23798 6.29104 6.31342 6.37937 6.57514 6.65522 6.68239 6.72612 6.88969 7.18776 7.23380 7.34545 7.74218 7.89317 7.97329 8.12454 8.77986 9.29308 9.78536 11.29266 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.008430 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.711856 B = 3320.713855 C = 5268.641813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.091 3.909 4 H 0.047 0.953 5 C 0.076 3.924 6 O -0.363 6.363 7 C 0.036 3.964 8 N -0.642 5.642 9 C 0.137 3.863 10 H 0.077 0.923 11 C 0.004 3.996 12 C -0.483 4.483 13 H 0.082 0.918 14 C 0.062 3.938 15 N -0.908 5.908 16 Si 0.870 3.130 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.268 1.268 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.334 0.666 37 H 0.011 0.989 38 H 0.017 0.983 39 H 0.258 0.742 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -4.764 12.429 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.019 4.019 4 H 0.065 0.935 5 C -0.001 4.001 6 O -0.281 6.281 7 C -0.061 4.061 8 N -0.274 5.274 9 C 0.027 3.973 10 H 0.095 0.905 11 C -0.033 4.033 12 C -0.521 4.521 13 H 0.100 0.900 14 C -0.137 4.137 15 N -0.548 5.548 16 Si 0.698 3.302 17 H -0.208 1.208 18 H -0.217 1.217 19 H -0.193 1.193 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.105 -4.837 11.883 15.732 hybrid contribution -1.191 0.975 0.002 1.539 sum -10.296 -3.862 11.885 16.192 Atomic orbital electron populations 1.21835 0.96458 1.01209 1.01605 1.21575 0.94884 0.96408 1.02954 1.21560 0.93636 0.94579 0.92171 0.93524 1.22499 0.93568 0.95008 0.89052 1.87976 1.18582 1.69324 1.52188 1.22636 0.82411 1.01192 0.99910 1.60594 1.38142 1.02898 1.25776 1.20778 0.89375 0.87813 0.99304 0.90499 1.19576 0.98701 0.94052 0.90988 1.21009 0.95798 1.30885 1.04443 0.90039 1.24958 0.94748 0.96389 0.97578 1.69905 1.16809 1.46807 1.21320 0.86947 0.82344 0.81008 0.79900 1.20786 1.21697 1.19305 1.21258 0.97936 0.95903 0.94729 1.20991 0.92112 1.00619 0.99701 1.21069 0.97283 0.98396 0.97013 1.21023 0.98073 0.98624 0.97613 1.21087 0.92772 1.00040 1.00066 1.21120 0.97459 0.98116 0.96929 0.92894 0.93226 0.92634 0.90024 0.92163 0.92988 0.94820 0.93834 0.95646 0.90202 0.84498 0.97068 0.96477 0.93213 0.86181 0.86590 0.86778 0.86644 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.65 37.16 0.36 -1.49 16 2 C -0.12 -1.65 5.22 -26.73 -0.14 -1.79 16 3 C 0.09 1.43 2.24 -67.71 -0.15 1.28 16 4 H 0.05 0.71 7.61 -51.93 -0.40 0.31 16 5 C 0.08 1.28 5.67 37.16 0.21 1.49 16 6 O -0.36 -6.87 9.89 -35.23 -0.35 -7.22 16 7 C 0.04 0.58 11.01 101.05 1.11 1.69 16 8 N -0.64 -11.85 5.71 -100.94 -0.58 -12.42 16 9 C 0.14 2.65 1.97 -68.86 -0.14 2.52 16 10 H 0.08 1.53 6.87 -51.93 -0.36 1.17 16 11 C 0.00 0.11 3.62 -27.88 -0.10 0.01 16 12 C -0.48 -13.67 9.39 -34.44 -0.32 -13.99 16 13 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 14 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 15 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 16 Si 0.87 22.30 27.47 -169.99 -4.67 17.63 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 20 C -0.10 -1.60 4.56 -104.63 -0.48 -2.08 16 21 C -0.12 -1.78 8.95 -39.59 -0.35 -2.13 16 22 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.14 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 25 C -0.12 -1.77 9.67 -39.58 -0.38 -2.15 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.69 6.65 -51.93 -0.35 0.34 16 29 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.97 7.35 -51.93 -0.38 0.58 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.33 5.77 4.58 -39.29 -0.18 5.59 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.12 1.82 6.92 -52.48 -0.36 1.46 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.67 7.99 -52.49 -0.42 1.25 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -31.75 353.30 -8.60 -40.34 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.42 Total: 4.92 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.67 Total: -20.97 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.20 Total: -40.03 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.35 Total: -7.22 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.75 -8.60 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.358 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds