Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47425 * 2 1 4 4 H 1.09001 * 109.46745 * 54.43016 * 3 2 1 5 5 C 1.52998 * 109.47117 * 294.43361 * 3 2 1 6 6 O 1.42894 * 109.47043 * 304.99231 * 5 3 2 7 7 C 1.42900 * 113.99954 * 180.02562 * 6 5 3 8 8 N 1.46900 * 109.47205 * 174.43025 * 3 2 1 9 9 C 1.46903 * 110.99880 * 273.71730 * 8 3 2 10 10 H 1.08999 * 109.47242 * 37.74739 * 9 8 3 11 11 C 1.53001 * 109.47046 * 157.75041 * 9 8 3 12 12 C 1.50701 * 109.47095 * 294.99751 * 11 9 8 13 13 H 1.08004 * 119.99496 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99968 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00152 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99836 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47029 * 90.00073 * 16 14 12 18 18 H 1.48493 * 109.47141 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47218 * 330.00314 * 16 14 12 20 20 C 1.50701 * 109.46806 * 277.74644 * 9 8 3 21 21 C 1.38234 * 120.00483 * 319.72893 * 20 9 8 22 22 C 1.38236 * 120.00035 * 179.80933 * 21 20 9 23 23 C 1.38228 * 120.00080 * 0.40052 * 22 21 20 24 24 C 1.38237 * 120.00315 * 359.85271 * 23 22 21 25 25 C 1.38238 * 119.99721 * 140.00386 * 20 9 8 26 26 H 1.09000 * 109.47402 * 185.57959 * 1 2 3 27 27 H 1.08995 * 109.47007 * 305.58676 * 1 2 3 28 28 H 1.09006 * 109.46433 * 65.58614 * 1 2 3 29 29 H 1.09003 * 109.47157 * 239.99664 * 2 1 3 30 30 H 1.09002 * 109.46912 * 120.00658 * 2 1 3 31 31 H 1.09002 * 109.46876 * 184.99777 * 5 3 2 32 32 H 1.09000 * 109.47343 * 64.99991 * 5 3 2 33 33 H 1.09002 * 109.46848 * 300.00253 * 7 6 5 34 34 H 1.09006 * 109.47272 * 180.02562 * 7 6 5 35 35 H 1.08992 * 109.46928 * 60.00488 * 7 6 5 36 36 H 1.00898 * 111.00140 * 149.76426 * 8 3 2 37 37 H 1.09002 * 109.47114 * 54.99607 * 11 9 8 38 38 H 1.08999 * 109.46926 * 174.99527 * 11 9 8 39 39 H 0.96993 * 120.00057 * 180.02562 * 15 14 12 40 40 H 1.07998 * 119.99730 * 359.97438 * 21 20 9 41 41 H 1.08007 * 119.99775 * 180.22591 * 22 21 20 42 42 H 1.08004 * 119.99820 * 179.83214 * 23 22 21 43 43 H 1.07996 * 120.00598 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00048 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9842 0.8359 5 6 1.6476 2.1222 -1.3133 6 8 2.1295 1.3476 -2.4131 7 6 1.8151 1.8981 -3.6938 8 7 3.5029 1.4446 0.1344 9 6 3.9018 1.4007 1.5476 10 1 3.2212 0.7506 2.0972 11 6 5.3276 0.8570 1.6585 12 6 5.3566 -0.5756 1.1914 13 1 4.4489 -1.0504 0.8494 14 6 6.5419 -1.2799 1.2009 15 7 7.6470 -0.7017 1.6179 16 14 6.5777 -3.0557 0.6227 17 1 6.8534 -3.0959 -0.8360 18 1 7.6442 -3.7912 1.3484 19 1 5.2639 -3.6918 0.8958 20 6 3.8476 2.7904 2.1281 21 6 4.2856 3.8687 1.3822 22 6 4.2322 5.1438 1.9133 23 6 3.7485 5.3397 3.1933 24 6 3.3154 4.2609 3.9412 25 6 3.3652 2.9861 3.4087 26 1 -0.3634 -1.0228 0.0999 27 1 -0.3633 0.5980 0.8357 28 1 -0.3632 0.4248 -0.9359 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0861 3.1194 -1.3515 32 1 0.5619 2.2002 -1.3718 33 1 0.7330 1.9718 -3.8019 34 1 2.2148 1.2518 -4.4753 35 1 2.2574 2.8905 -3.7811 36 1 3.9077 2.2431 -0.3309 37 1 5.9940 1.4553 1.0371 38 1 5.6560 0.9075 2.6966 39 1 8.4809 -1.1970 1.6242 40 1 4.6670 3.7152 0.3836 41 1 4.5710 5.9867 1.3291 42 1 3.7094 6.3357 3.6092 43 1 2.9379 4.4138 4.9415 44 1 3.0267 2.1433 3.9929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = -30.765678 kcal Electronic energy + Delta-G solvation = -22252.820143 eV Core-core repulsion = 19169.700796 eV Total energy + Delta-G solvation = -3083.119347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.37147 -38.12389 -36.12207 -33.79115 -32.28517 -30.70459 -30.18539 -28.90023 -27.54671 -25.73831 -24.30694 -23.63434 -22.21568 -21.83471 -19.84669 -19.46389 -16.94895 -16.29917 -16.04059 -15.87126 -15.26356 -14.85885 -14.72708 -14.31143 -14.06985 -13.83050 -13.56367 -13.08312 -13.01275 -12.57125 -12.46142 -12.12020 -12.04685 -11.88257 -11.40970 -11.31546 -11.06223 -10.92997 -10.78962 -10.64277 -10.46939 -10.38974 -10.26748 -9.91514 -9.54354 -9.45270 -8.94468 -8.61932 -8.21442 -8.17952 -7.58401 -5.81878 -3.79281 1.70345 1.71450 3.45214 3.50601 3.54652 3.96353 4.12221 4.62755 4.74618 5.08658 5.17427 5.19483 5.20590 5.29713 5.38213 5.41052 5.47036 5.50879 5.55199 5.60887 5.67443 5.72239 5.78356 5.85280 5.87808 5.94377 6.13084 6.21177 6.31326 6.33000 6.42586 6.64487 6.77081 6.77549 6.82053 6.97648 7.02190 7.33012 7.33848 7.61211 7.74563 8.04999 8.12052 8.22145 8.63425 9.26043 9.81741 11.30177 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.007469 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.063601 B = 3748.168510 C = 5559.513072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.092 3.908 4 H 0.047 0.953 5 C 0.062 3.938 6 O -0.365 6.365 7 C 0.030 3.970 8 N -0.647 5.647 9 C 0.128 3.872 10 H 0.076 0.924 11 C 0.043 3.957 12 C -0.485 4.485 13 H 0.062 0.938 14 C 0.050 3.950 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.275 1.275 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.333 0.667 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.256 0.744 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.506 10.219 -2.853 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.019 4.019 4 H 0.065 0.935 5 C -0.015 4.015 6 O -0.283 6.283 7 C -0.067 4.067 8 N -0.278 5.278 9 C 0.018 3.982 10 H 0.094 0.906 11 C 0.005 3.995 12 C -0.523 4.523 13 H 0.080 0.920 14 C -0.149 4.149 15 N -0.545 5.545 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.201 1.201 20 C -0.093 4.093 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.153 0.847 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.160 9.313 -2.914 16.383 hybrid contribution -0.128 0.355 -0.088 0.388 sum -13.287 9.669 -3.001 16.705 Atomic orbital electron populations 1.21813 0.97053 1.01155 1.00713 1.21428 0.93388 0.96179 1.03760 1.21609 0.90359 0.96578 0.93313 0.93507 1.22739 0.97373 0.93760 0.87637 1.88082 1.78448 1.48819 1.12998 1.22708 0.98857 0.98727 0.86392 1.60593 1.05843 1.48069 1.13253 1.21061 1.01780 0.88673 0.86682 0.90617 1.19078 0.87445 0.96132 0.96816 1.21131 0.94389 0.96186 1.40636 0.92001 1.24987 0.95887 0.97967 0.96056 1.69971 0.99143 1.36719 1.48707 0.86624 0.77336 0.85481 0.78672 1.20905 1.21757 1.20052 1.21271 0.95336 0.97996 0.94663 1.20972 1.00138 0.92381 1.00348 1.21049 1.00079 0.96861 0.95798 1.20998 1.01151 0.98444 0.95006 1.21082 1.00444 0.93010 0.99390 1.21099 1.00236 0.96831 0.95425 0.92980 0.93506 0.93345 0.90299 0.91518 0.94053 0.93372 0.94816 0.89817 0.94552 0.84673 0.96390 0.96416 0.93406 0.86298 0.86692 0.86846 0.86693 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.54 37.16 0.35 -1.55 16 2 C -0.11 -1.76 5.53 -26.73 -0.15 -1.91 16 3 C 0.09 1.44 2.28 -67.72 -0.15 1.28 16 4 H 0.05 0.72 7.52 -51.93 -0.39 0.33 16 5 C 0.06 0.85 5.12 37.16 0.19 1.04 16 6 O -0.37 -5.57 9.67 -35.23 -0.34 -5.91 16 7 C 0.03 0.34 11.01 101.05 1.11 1.45 16 8 N -0.65 -12.15 5.69 -100.95 -0.57 -12.73 16 9 C 0.13 2.57 1.99 -68.86 -0.14 2.43 16 10 H 0.08 1.55 7.06 -51.93 -0.37 1.19 16 11 C 0.04 1.09 4.63 -27.88 -0.13 0.96 16 12 C -0.48 -13.68 8.84 -34.44 -0.30 -13.98 16 13 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 16 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 17 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C -0.09 -1.60 4.46 -104.62 -0.47 -2.07 16 21 C -0.12 -1.96 9.14 -39.58 -0.36 -2.32 16 22 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 23 C -0.14 -1.86 10.05 -39.59 -0.40 -2.26 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 25 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 6.98 -51.93 -0.36 0.21 16 29 H 0.08 1.42 7.38 -51.93 -0.38 1.04 16 30 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 31 H 0.04 0.53 8.02 -51.93 -0.42 0.12 16 32 H 0.05 0.57 6.96 -51.93 -0.36 0.21 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.33 6.03 5.97 -39.29 -0.23 5.80 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.12 1.90 6.52 -52.49 -0.34 1.56 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -31.37 356.41 -8.98 -40.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.43 Total: 4.46 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.72 Total: -22.03 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.16 Total: -39.70 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.34 Total: -5.91 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.37 -8.98 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.580 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds