Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47425 * 2 1 4 4 H 1.09001 * 109.46745 * 54.43016 * 3 2 1 5 5 C 1.52998 * 109.47117 * 294.43361 * 3 2 1 6 6 O 1.42894 * 109.47043 * 304.99231 * 5 3 2 7 7 C 1.42900 * 113.99954 * 180.02562 * 6 5 3 8 8 N 1.46900 * 109.47205 * 174.43025 * 3 2 1 9 9 C 1.46903 * 110.99880 * 273.71730 * 8 3 2 10 10 H 1.08999 * 109.47242 * 37.74739 * 9 8 3 11 11 C 1.53001 * 109.47046 * 157.75041 * 9 8 3 12 12 C 1.50701 * 109.47095 * 294.99751 * 11 9 8 13 13 H 1.08004 * 119.99496 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99968 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00152 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99836 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47029 * 90.00073 * 16 14 12 18 18 H 1.48493 * 109.47141 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47218 * 330.00314 * 16 14 12 20 20 C 1.50701 * 109.46806 * 277.74644 * 9 8 3 21 21 C 1.38234 * 120.00483 * 319.72893 * 20 9 8 22 22 C 1.38236 * 120.00035 * 179.80933 * 21 20 9 23 23 C 1.38228 * 120.00080 * 0.40052 * 22 21 20 24 24 C 1.38237 * 120.00315 * 359.85271 * 23 22 21 25 25 C 1.38238 * 119.99721 * 140.00386 * 20 9 8 26 26 H 1.09000 * 109.47402 * 185.57959 * 1 2 3 27 27 H 1.08995 * 109.47007 * 305.58676 * 1 2 3 28 28 H 1.09006 * 109.46433 * 65.58614 * 1 2 3 29 29 H 1.09003 * 109.47157 * 239.99664 * 2 1 3 30 30 H 1.09002 * 109.46912 * 120.00658 * 2 1 3 31 31 H 1.09002 * 109.46876 * 184.99777 * 5 3 2 32 32 H 1.09000 * 109.47343 * 64.99991 * 5 3 2 33 33 H 1.09002 * 109.46848 * 300.00253 * 7 6 5 34 34 H 1.09006 * 109.47272 * 180.02562 * 7 6 5 35 35 H 1.08992 * 109.46928 * 60.00488 * 7 6 5 36 36 H 1.00898 * 111.00140 * 149.76426 * 8 3 2 37 37 H 1.09002 * 109.47114 * 54.99607 * 11 9 8 38 38 H 1.08999 * 109.46926 * 174.99527 * 11 9 8 39 39 H 0.96993 * 120.00057 * 180.02562 * 15 14 12 40 40 H 1.07998 * 119.99730 * 359.97438 * 21 20 9 41 41 H 1.08007 * 119.99775 * 180.22591 * 22 21 20 42 42 H 1.08004 * 119.99820 * 179.83214 * 23 22 21 43 43 H 1.07996 * 120.00598 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00048 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9842 0.8359 5 6 1.6476 2.1222 -1.3133 6 8 2.1295 1.3476 -2.4131 7 6 1.8151 1.8981 -3.6938 8 7 3.5029 1.4446 0.1344 9 6 3.9018 1.4007 1.5476 10 1 3.2212 0.7506 2.0972 11 6 5.3276 0.8570 1.6585 12 6 5.3566 -0.5756 1.1914 13 1 4.4489 -1.0504 0.8494 14 6 6.5419 -1.2799 1.2009 15 7 7.6470 -0.7017 1.6179 16 14 6.5777 -3.0557 0.6227 17 1 6.8534 -3.0959 -0.8360 18 1 7.6442 -3.7912 1.3484 19 1 5.2639 -3.6918 0.8958 20 6 3.8476 2.7904 2.1281 21 6 4.2856 3.8687 1.3822 22 6 4.2322 5.1438 1.9133 23 6 3.7485 5.3397 3.1933 24 6 3.3154 4.2609 3.9412 25 6 3.3652 2.9861 3.4087 26 1 -0.3634 -1.0228 0.0999 27 1 -0.3633 0.5980 0.8357 28 1 -0.3632 0.4248 -0.9359 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0861 3.1194 -1.3515 32 1 0.5619 2.2002 -1.3718 33 1 0.7330 1.9718 -3.8019 34 1 2.2148 1.2518 -4.4753 35 1 2.2574 2.8905 -3.7811 36 1 3.9077 2.2431 -0.3309 37 1 5.9940 1.4553 1.0371 38 1 5.6560 0.9075 2.6966 39 1 8.4809 -1.1970 1.6242 40 1 4.6670 3.7152 0.3836 41 1 4.5710 5.9867 1.3291 42 1 3.7094 6.3357 3.6092 43 1 2.9379 4.4138 4.9415 44 1 3.0267 2.1433 3.9929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -49.644173 kcal Electronic energy + Delta-G solvation = -22253.638776 eV Core-core repulsion = 19169.700796 eV Total energy + Delta-G solvation = -3083.937980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65779 -39.24419 -37.42247 -35.40212 -34.18250 -31.91089 -31.40866 -30.54022 -28.87435 -26.89066 -25.97675 -24.83995 -23.68457 -23.20905 -21.27712 -20.80018 -18.60347 -17.73069 -17.39647 -17.03425 -16.65735 -16.31232 -16.10635 -15.85438 -15.30630 -14.96302 -14.83716 -14.42282 -14.27347 -14.19367 -13.83718 -13.66201 -13.40332 -13.06370 -12.83866 -12.78824 -12.52162 -12.37245 -12.28115 -12.13938 -12.08410 -11.78988 -11.74651 -11.34741 -11.26790 -11.10369 -10.50510 -10.46604 -9.78824 -9.51814 -9.03489 -8.08485 -6.13055 0.50974 0.53409 1.40802 1.43091 1.53184 2.48042 2.91147 2.96750 3.23251 3.41846 3.89784 3.98344 4.05531 4.08537 4.19827 4.31616 4.40136 4.44950 4.51281 4.54715 4.59625 4.63059 4.66485 4.69517 4.71224 4.81293 4.90181 4.99238 5.10105 5.16801 5.19386 5.24994 5.38728 5.49860 5.57653 5.61444 5.62721 5.64683 5.77571 5.90859 6.17069 6.30538 6.37998 6.54093 6.71862 7.00242 7.52165 9.03700 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.007469 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.063601 B = 3748.168510 C = 5559.513072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.094 3.906 4 H 0.053 0.947 5 C 0.067 3.933 6 O -0.399 6.399 7 C 0.025 3.975 8 N -0.664 5.664 9 C 0.147 3.853 10 H 0.064 0.936 11 C 0.053 3.947 12 C -0.494 4.494 13 H 0.058 0.942 14 C -0.006 4.006 15 N -0.941 5.941 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.133 4.133 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.334 0.666 37 H -0.012 1.012 38 H -0.014 1.014 39 H 0.258 0.742 40 H 0.113 0.887 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.408 11.680 -3.043 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.016 4.016 4 H 0.071 0.929 5 C -0.009 4.009 6 O -0.318 6.318 7 C -0.071 4.071 8 N -0.296 5.296 9 C 0.037 3.963 10 H 0.082 0.918 11 C 0.016 3.984 12 C -0.532 4.532 13 H 0.076 0.924 14 C -0.201 4.201 15 N -0.583 5.583 16 Si 0.782 3.218 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.116 4.116 21 C -0.152 4.152 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.154 0.846 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.067 0.933 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.084 10.778 -3.111 18.799 hybrid contribution 0.469 -0.026 -0.018 0.470 sum -14.616 10.752 -3.130 18.413 Atomic orbital electron populations 1.21728 0.94032 1.02027 1.01958 1.21364 0.96002 0.95955 1.01143 1.21633 0.88202 0.96640 0.95123 0.92878 1.22702 0.98746 0.93400 0.86100 1.88034 1.79208 1.50020 1.14581 1.22880 1.00325 0.99131 0.84758 1.60465 1.08282 1.48484 1.12348 1.20488 0.97669 0.90261 0.87923 0.91765 1.18850 0.90682 0.94981 0.93890 1.21445 0.94205 0.97510 1.40031 0.92381 1.25840 0.95579 1.02411 0.96293 1.70102 0.99728 1.38485 1.50009 0.85580 0.77744 0.80319 0.78152 1.20491 1.21058 1.19083 1.21013 0.98023 0.96748 0.95842 1.21040 1.00662 0.93244 1.00271 1.21387 0.99303 0.96534 0.96534 1.21458 0.99104 0.99917 0.94344 1.21432 0.99565 0.92040 1.00688 1.21243 1.00791 0.98265 0.94898 0.92382 0.92273 0.91947 0.92694 0.94262 0.93241 0.90872 0.92803 0.89453 0.93629 0.84557 0.99376 0.99537 0.93328 0.86943 0.83944 0.83241 0.83738 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.54 71.98 0.69 -2.66 16 2 C -0.11 -3.47 5.53 30.59 0.17 -3.30 16 3 C 0.09 2.94 2.28 44.91 0.10 3.05 16 4 H 0.05 1.61 7.52 -2.39 -0.02 1.59 16 5 C 0.07 1.75 5.12 71.98 0.37 2.12 16 6 O -0.40 -11.89 9.67 -148.98 -1.44 -13.33 16 7 C 0.03 0.53 11.01 113.37 1.25 1.78 16 8 N -0.66 -25.95 5.69 -473.31 -2.69 -28.64 16 9 C 0.15 6.22 1.99 44.17 0.09 6.30 16 10 H 0.06 2.80 7.06 -2.39 -0.02 2.78 16 11 C 0.05 2.91 4.63 29.85 0.14 3.05 16 12 C -0.49 -29.07 8.84 25.60 0.23 -28.84 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 14 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 15 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 16 Si 0.96 47.22 29.54 68.60 2.03 49.24 16 17 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.11 -4.14 4.46 -19.86 -0.09 -4.23 16 21 C -0.13 -4.36 9.14 22.27 0.20 -4.16 16 22 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 24 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 25 C -0.13 -4.28 9.67 22.27 0.22 -4.07 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.33 6.98 -2.38 -0.02 1.31 16 29 H 0.05 2.03 7.38 -2.39 -0.02 2.01 16 30 H 0.04 1.46 7.44 -2.39 -0.02 1.44 16 31 H 0.05 1.20 8.02 -2.39 -0.02 1.18 16 32 H 0.07 1.53 6.96 -2.39 -0.02 1.52 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.33 12.59 5.97 -89.70 -0.54 12.05 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.11 3.70 6.52 -2.91 -0.02 3.69 16 41 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 43 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 44 H 0.12 3.68 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -70.55 356.41 3.09 -67.46 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.42 Total: 24.02 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.49 Total: -39.43 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.41 Total: -87.97 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.44 Total: -13.33 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -70.55 3.09 -67.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.819 kcal (2) G-P(sol) polarization free energy of solvation -70.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds