Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 H 1.09004 * 109.47702 * 55.12440 * 3 2 1 5 5 C 1.53007 * 109.47061 * 175.12100 * 3 2 1 6 6 O 1.42902 * 109.47016 * 54.99948 * 5 3 2 7 7 C 1.42894 * 113.99690 * 180.02562 * 6 5 3 8 8 N 1.46894 * 109.47687 * 295.11972 * 3 2 1 9 9 C 1.46904 * 111.00518 * 152.80711 * 8 3 2 10 10 H 1.08992 * 109.46813 * 329.27228 * 9 8 3 11 11 C 1.52995 * 109.47318 * 209.26718 * 9 8 3 12 12 C 1.50697 * 109.47071 * 65.00286 * 11 9 8 13 13 H 1.07999 * 120.00044 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00282 * 179.97438 * 12 11 9 15 15 N 1.31523 * 119.99485 * 0.26945 * 14 12 11 16 16 Si 1.86794 * 120.00076 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47206 * 90.00157 * 16 14 12 18 18 H 1.48509 * 109.47000 * 209.99459 * 16 14 12 19 19 H 1.48502 * 109.47188 * 329.99497 * 16 14 12 20 20 C 1.50704 * 109.46489 * 89.26688 * 9 8 3 21 21 C 1.38234 * 120.00086 * 39.73425 * 20 9 8 22 22 C 1.38240 * 119.99668 * 179.78564 * 21 20 9 23 23 C 1.38235 * 120.00137 * 0.43833 * 22 21 20 24 24 C 1.38228 * 119.99767 * 359.81356 * 23 22 21 25 25 C 1.38231 * 119.99834 * 219.99792 * 20 9 8 26 26 H 1.08994 * 109.46964 * 175.22367 * 1 2 3 27 27 H 1.08992 * 109.47246 * 295.22637 * 1 2 3 28 28 H 1.09007 * 109.46985 * 55.22730 * 1 2 3 29 29 H 1.08998 * 109.47311 * 240.00002 * 2 1 3 30 30 H 1.09002 * 109.46725 * 119.99728 * 2 1 3 31 31 H 1.09004 * 109.47238 * 175.00292 * 5 3 2 32 32 H 1.09009 * 109.46627 * 294.99947 * 5 3 2 33 33 H 1.09003 * 109.46944 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47465 * 299.99841 * 7 6 5 35 35 H 1.08998 * 109.47536 * 60.00339 * 7 6 5 36 36 H 1.00898 * 111.00461 * 276.76887 * 8 3 2 37 37 H 1.08994 * 109.47055 * 304.99996 * 11 9 8 38 38 H 1.08998 * 109.46963 * 185.00059 * 11 9 8 39 39 H 0.96996 * 119.99769 * 359.73325 * 15 14 12 40 40 H 1.08004 * 120.00079 * 359.97438 * 21 20 9 41 41 H 1.07996 * 119.99518 * 180.27201 * 22 21 20 42 42 H 1.07993 * 119.99706 * 179.83736 * 23 22 21 43 43 H 1.08004 * 119.99797 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.00217 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9810 0.8431 5 6 3.5651 1.4442 0.1227 6 8 4.1275 0.6410 -0.9168 7 6 5.5547 0.5749 -0.8925 8 7 1.6489 2.1002 -1.2539 9 6 1.5198 3.5518 -1.0691 10 1 1.2039 3.7612 -0.0472 11 6 0.4790 4.1000 -2.0473 12 6 -0.8757 3.5331 -1.7091 13 1 -0.9835 2.8498 -0.8797 14 6 -1.9777 3.8866 -2.4585 15 7 -1.8456 4.7146 -3.4718 16 14 -3.6570 3.1845 -2.0387 17 1 -4.3392 4.0787 -1.0691 18 1 -4.4732 3.0806 -3.2751 19 1 -3.4938 1.8360 -1.4386 20 6 2.8498 4.2114 -1.3289 21 6 3.6497 3.7692 -2.3659 22 6 4.8676 4.3772 -2.6069 23 6 5.2896 5.4213 -1.8052 24 6 4.4920 5.8599 -0.7650 25 6 3.2721 5.2549 -0.5267 26 1 -0.3633 -1.0241 -0.0856 27 1 -0.3633 0.4379 0.9296 28 1 -0.3633 0.5861 -0.8442 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9356 2.4655 0.0336 32 1 3.8520 1.0369 1.0922 33 1 5.9034 -0.0534 -1.7121 34 1 5.9669 1.5780 -1.0024 35 1 5.8827 0.1493 0.0559 36 1 2.3014 1.8864 -1.9932 37 1 0.7493 3.8136 -3.0636 38 1 0.4470 5.1869 -1.9724 39 1 -0.9737 5.0794 -3.6895 40 1 3.3218 2.9508 -2.9898 41 1 5.4906 4.0346 -3.4199 42 1 6.2422 5.8944 -1.9919 43 1 4.8215 6.6760 -0.1389 44 1 2.6488 5.5978 0.2859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = -35.052459 kcal Electronic energy + Delta-G solvation = -22709.061356 eV Core-core repulsion = 19625.756120 eV Total energy + Delta-G solvation = -3083.305236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.58284 -38.08545 -36.19520 -33.91912 -32.42329 -30.72051 -29.99685 -28.94194 -27.46548 -25.92125 -24.11557 -23.04245 -22.43180 -21.90930 -20.06482 -19.83341 -17.02700 -16.43937 -16.35743 -15.74168 -15.42774 -14.96077 -14.82760 -14.14483 -13.95991 -13.65983 -13.45601 -13.14276 -12.86816 -12.81546 -12.61901 -12.34884 -11.88305 -11.74052 -11.43836 -11.31421 -11.01287 -10.98292 -10.69182 -10.64068 -10.49648 -10.29749 -10.17650 -10.01893 -9.83536 -9.60239 -8.68770 -8.53026 -8.18140 -8.16583 -7.63830 -6.16880 -3.82274 1.63213 1.63900 3.52764 3.57743 3.72972 3.83936 4.05069 4.68234 4.79265 5.05580 5.11677 5.14806 5.20119 5.23716 5.28662 5.37165 5.42257 5.50499 5.59114 5.59921 5.65352 5.75821 5.79209 5.83612 5.99063 6.03329 6.19149 6.23661 6.31762 6.39337 6.48330 6.68287 6.70379 6.71709 6.77955 6.92413 7.12646 7.17360 7.25811 7.38039 7.46877 7.90932 8.11520 8.42969 8.70360 9.07788 9.86255 11.23360 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.006782 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.994585 B = 4127.731680 C = 5569.656575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C 0.092 3.908 4 H 0.083 0.917 5 C 0.028 3.972 6 O -0.380 6.380 7 C 0.033 3.967 8 N -0.647 5.647 9 C 0.135 3.865 10 H 0.072 0.928 11 C 0.030 3.970 12 C -0.567 4.567 13 H 0.055 0.945 14 C 0.009 3.991 15 N -0.924 5.924 16 Si 1.068 2.932 17 H -0.292 1.292 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.341 0.659 37 H 0.009 0.991 38 H 0.006 0.994 39 H 0.266 0.734 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.161 -4.799 7.190 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.019 4.019 4 H 0.101 0.899 5 C -0.050 4.050 6 O -0.298 6.298 7 C -0.063 4.063 8 N -0.278 5.278 9 C 0.025 3.975 10 H 0.090 0.910 11 C -0.007 4.007 12 C -0.606 4.606 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.562 5.562 16 Si 0.897 3.103 17 H -0.219 1.219 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.163 0.837 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.751 -5.044 6.681 15.253 hybrid contribution 2.970 0.540 0.736 3.107 sum 15.721 -4.504 7.417 17.957 Atomic orbital electron populations 1.21742 0.95096 1.00588 1.03223 1.21329 0.96603 0.94896 1.00953 1.21835 0.89040 0.96726 0.94299 0.89858 1.23482 0.97060 0.94419 0.90081 1.87872 1.19312 1.70620 1.52015 1.22676 0.81922 1.00610 1.01130 1.60608 1.53420 1.08206 1.05522 1.20897 0.89629 0.85811 1.01166 0.90965 1.19192 0.93480 0.94578 0.93467 1.21923 0.92355 1.29074 1.17254 0.92649 1.25725 1.03469 0.95992 0.94160 1.70750 1.27306 1.30338 1.27757 0.83563 0.75317 0.75709 0.75695 1.21929 1.21380 1.21393 1.21208 0.97474 0.96136 0.94515 1.20973 0.94275 1.00217 0.97551 1.21054 0.96583 0.96754 0.99380 1.21005 0.99836 0.98091 0.96599 1.21070 0.95009 0.99808 0.98135 1.21086 0.96148 0.96585 1.00077 0.94268 0.93955 0.89536 0.91544 0.93386 0.93073 0.94022 0.89944 0.94375 0.94670 0.83716 0.97249 0.97570 0.92368 0.86115 0.86676 0.86829 0.86696 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.86 37.16 0.37 -2.10 16 2 C -0.10 -1.51 5.33 -26.73 -0.14 -1.65 16 3 C 0.09 1.44 2.42 -67.71 -0.16 1.28 16 4 H 0.08 1.33 7.34 -51.93 -0.38 0.95 16 5 C 0.03 0.39 5.49 37.16 0.20 0.59 16 6 O -0.38 -5.32 9.28 -35.23 -0.33 -5.65 16 7 C 0.03 0.36 11.01 101.05 1.11 1.47 16 8 N -0.65 -11.97 5.14 -100.96 -0.52 -12.49 16 9 C 0.13 2.68 2.19 -68.86 -0.15 2.53 16 10 H 0.07 1.46 7.18 -51.93 -0.37 1.09 16 11 C 0.03 0.76 3.94 -27.89 -0.11 0.65 16 12 C -0.57 -15.76 8.84 -34.44 -0.30 -16.07 16 13 H 0.06 1.53 7.54 -52.49 -0.40 1.13 16 14 C 0.01 0.25 5.46 -17.82 -0.10 0.15 16 15 N -0.92 -28.71 13.65 55.43 0.76 -27.96 16 16 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 C -0.09 -1.59 3.16 -104.62 -0.33 -1.92 16 21 C -0.11 -1.82 8.79 -39.58 -0.35 -2.17 16 22 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 23 C -0.14 -1.81 10.05 -39.59 -0.40 -2.21 16 24 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16 25 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.73 7.42 -51.93 -0.39 1.35 16 29 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.75 6.13 -51.93 -0.32 0.43 16 32 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.34 6.26 5.42 -39.29 -0.21 6.05 16 37 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 38 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 39 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 40 H 0.12 2.01 6.53 -52.48 -0.34 1.67 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.12 1.77 8.04 -52.48 -0.42 1.35 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -30.57 353.31 -8.77 -39.34 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.38 Total: 6.49 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -1.54 Total: -25.90 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.24 Total: -40.45 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.33 Total: -5.65 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.57 -8.77 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds