Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 H 1.09004 * 109.47702 * 55.12440 * 3 2 1 5 5 C 1.53007 * 109.47061 * 175.12100 * 3 2 1 6 6 O 1.42902 * 109.47016 * 54.99948 * 5 3 2 7 7 C 1.42894 * 113.99690 * 180.02562 * 6 5 3 8 8 N 1.46894 * 109.47687 * 295.11972 * 3 2 1 9 9 C 1.46904 * 111.00518 * 152.80711 * 8 3 2 10 10 H 1.08992 * 109.46813 * 329.27228 * 9 8 3 11 11 C 1.52995 * 109.47318 * 209.26718 * 9 8 3 12 12 C 1.50697 * 109.47071 * 65.00286 * 11 9 8 13 13 H 1.07999 * 120.00044 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00282 * 179.97438 * 12 11 9 15 15 N 1.31523 * 119.99485 * 0.26945 * 14 12 11 16 16 Si 1.86794 * 120.00076 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47206 * 90.00157 * 16 14 12 18 18 H 1.48509 * 109.47000 * 209.99459 * 16 14 12 19 19 H 1.48502 * 109.47188 * 329.99497 * 16 14 12 20 20 C 1.50704 * 109.46489 * 89.26688 * 9 8 3 21 21 C 1.38234 * 120.00086 * 39.73425 * 20 9 8 22 22 C 1.38240 * 119.99668 * 179.78564 * 21 20 9 23 23 C 1.38235 * 120.00137 * 0.43833 * 22 21 20 24 24 C 1.38228 * 119.99767 * 359.81356 * 23 22 21 25 25 C 1.38231 * 119.99834 * 219.99792 * 20 9 8 26 26 H 1.08994 * 109.46964 * 175.22367 * 1 2 3 27 27 H 1.08992 * 109.47246 * 295.22637 * 1 2 3 28 28 H 1.09007 * 109.46985 * 55.22730 * 1 2 3 29 29 H 1.08998 * 109.47311 * 240.00002 * 2 1 3 30 30 H 1.09002 * 109.46725 * 119.99728 * 2 1 3 31 31 H 1.09004 * 109.47238 * 175.00292 * 5 3 2 32 32 H 1.09009 * 109.46627 * 294.99947 * 5 3 2 33 33 H 1.09003 * 109.46944 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47465 * 299.99841 * 7 6 5 35 35 H 1.08998 * 109.47536 * 60.00339 * 7 6 5 36 36 H 1.00898 * 111.00461 * 276.76887 * 8 3 2 37 37 H 1.08994 * 109.47055 * 304.99996 * 11 9 8 38 38 H 1.08998 * 109.46963 * 185.00059 * 11 9 8 39 39 H 0.96996 * 119.99769 * 359.73325 * 15 14 12 40 40 H 1.08004 * 120.00079 * 359.97438 * 21 20 9 41 41 H 1.07996 * 119.99518 * 180.27201 * 22 21 20 42 42 H 1.07993 * 119.99706 * 179.83736 * 23 22 21 43 43 H 1.08004 * 119.99797 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.00217 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9810 0.8431 5 6 3.5651 1.4442 0.1227 6 8 4.1275 0.6410 -0.9168 7 6 5.5547 0.5749 -0.8925 8 7 1.6489 2.1002 -1.2539 9 6 1.5198 3.5518 -1.0691 10 1 1.2039 3.7612 -0.0472 11 6 0.4790 4.1000 -2.0473 12 6 -0.8757 3.5331 -1.7091 13 1 -0.9835 2.8498 -0.8797 14 6 -1.9777 3.8866 -2.4585 15 7 -1.8456 4.7146 -3.4718 16 14 -3.6570 3.1845 -2.0387 17 1 -4.3392 4.0787 -1.0691 18 1 -4.4732 3.0806 -3.2751 19 1 -3.4938 1.8360 -1.4386 20 6 2.8498 4.2114 -1.3289 21 6 3.6497 3.7692 -2.3659 22 6 4.8676 4.3772 -2.6069 23 6 5.2896 5.4213 -1.8052 24 6 4.4920 5.8599 -0.7650 25 6 3.2721 5.2549 -0.5267 26 1 -0.3633 -1.0241 -0.0856 27 1 -0.3633 0.4379 0.9296 28 1 -0.3633 0.5861 -0.8442 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9356 2.4655 0.0336 32 1 3.8520 1.0369 1.0922 33 1 5.9034 -0.0534 -1.7121 34 1 5.9669 1.5780 -1.0024 35 1 5.8827 0.1493 0.0559 36 1 2.3014 1.8864 -1.9932 37 1 0.7493 3.8136 -3.0636 38 1 0.4470 5.1869 -1.9724 39 1 -0.9737 5.0794 -3.6895 40 1 3.3218 2.9508 -2.9898 41 1 5.4906 4.0346 -3.4199 42 1 6.2422 5.8944 -1.9919 43 1 4.8215 6.6760 -0.1389 44 1 2.6488 5.5978 0.2859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = -52.816220 kcal Electronic energy + Delta-G solvation = -22709.831651 eV Core-core repulsion = 19625.756120 eV Total energy + Delta-G solvation = -3084.075530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85416 -39.18734 -37.48833 -35.63693 -34.21314 -31.89457 -31.26388 -30.44213 -28.93909 -26.95908 -25.92011 -24.33853 -23.88842 -23.31697 -21.35868 -21.28639 -18.83441 -17.98198 -17.45981 -16.82716 -16.56160 -16.17381 -16.03733 -15.67447 -15.37792 -15.29701 -15.00515 -14.49850 -14.27507 -14.00126 -13.96671 -13.61687 -13.30565 -13.19632 -12.98379 -12.76557 -12.47868 -12.30532 -12.24679 -12.12149 -11.90921 -11.80733 -11.75394 -11.55942 -11.41234 -10.65289 -10.55824 -10.43695 -9.84352 -9.54040 -9.06380 -8.52149 -6.17350 0.44782 0.47604 1.54235 1.64296 1.81349 2.63979 2.81806 2.87816 3.28177 3.46500 3.83780 3.90687 3.98401 4.09919 4.13421 4.25579 4.31307 4.40725 4.46086 4.50638 4.53427 4.61368 4.65381 4.69099 4.72790 4.83064 4.89074 4.90417 5.08284 5.12170 5.13929 5.20641 5.23980 5.39484 5.47242 5.55855 5.58106 5.68612 5.72182 6.09674 6.16593 6.20361 6.37604 6.44564 6.65914 6.77221 7.60083 8.88134 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.006782 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.994585 B = 4127.731680 C = 5569.656575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C 0.091 3.909 4 H 0.079 0.921 5 C 0.040 3.960 6 O -0.399 6.399 7 C 0.030 3.970 8 N -0.661 5.661 9 C 0.152 3.848 10 H 0.063 0.937 11 C 0.038 3.962 12 C -0.567 4.567 13 H 0.056 0.944 14 C -0.048 4.048 15 N -0.952 5.952 16 Si 1.114 2.886 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.269 1.269 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.135 4.135 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.340 0.660 37 H -0.019 1.019 38 H -0.021 1.021 39 H 0.250 0.750 40 H 0.107 0.893 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.103 -5.435 8.620 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.020 4.020 4 H 0.097 0.903 5 C -0.038 4.038 6 O -0.318 6.318 7 C -0.066 4.066 8 N -0.292 5.292 9 C 0.042 3.958 10 H 0.081 0.919 11 C 0.001 3.999 12 C -0.605 4.605 13 H 0.074 0.926 14 C -0.243 4.243 15 N -0.592 5.592 16 Si 0.937 3.063 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.194 1.194 20 C -0.113 4.113 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.161 0.839 37 H -0.001 1.001 38 H -0.003 1.003 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.723 -5.687 8.133 17.756 hybrid contribution 2.473 0.744 0.281 2.597 sum 17.196 -4.943 8.414 19.772 Atomic orbital electron populations 1.21667 0.96241 1.00815 1.01517 1.21277 0.95448 0.94520 1.01749 1.21846 0.90874 0.96637 0.92595 0.90333 1.23246 0.95292 0.94264 0.91008 1.87846 1.21250 1.70489 1.52203 1.22842 0.80145 1.01085 1.02574 1.60484 1.54201 1.07464 1.07100 1.20386 0.89902 0.86977 0.98584 0.91862 1.19024 0.94564 0.92890 0.93465 1.22259 0.93549 1.28132 1.16566 0.92621 1.27211 1.07638 0.95762 0.93674 1.70891 1.26369 1.32350 1.29543 0.82970 0.71282 0.76222 0.75839 1.20147 1.21548 1.19414 1.20912 0.96647 0.97445 0.96256 1.20950 0.95439 1.00523 0.97347 1.21351 0.95725 0.96633 1.00045 1.21437 1.00828 0.97058 0.95320 1.21414 0.93870 0.99954 0.98467 1.21226 0.97453 0.96469 1.00198 0.92643 0.93618 0.93579 0.92366 0.90745 0.93908 0.92040 0.88602 0.94369 0.93159 0.83856 1.00057 1.00269 0.94056 0.87495 0.84252 0.83278 0.83742 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.86 71.98 0.71 -4.01 16 2 C -0.09 -2.68 5.33 30.59 0.16 -2.52 16 3 C 0.09 2.83 2.42 44.92 0.11 2.94 16 4 H 0.08 2.50 7.34 -2.38 -0.02 2.48 16 5 C 0.04 1.06 5.49 71.98 0.39 1.46 16 6 O -0.40 -10.61 9.28 -148.98 -1.38 -12.00 16 7 C 0.03 0.58 11.01 113.37 1.25 1.82 16 8 N -0.66 -25.31 5.14 -473.32 -2.43 -27.75 16 9 C 0.15 6.29 2.19 44.17 0.10 6.39 16 10 H 0.06 2.67 7.18 -2.39 -0.02 2.66 16 11 C 0.04 2.03 3.94 29.85 0.12 2.14 16 12 C -0.57 -32.69 8.84 25.60 0.23 -32.46 16 13 H 0.06 3.15 7.54 -2.91 -0.02 3.13 16 14 C -0.05 -2.85 5.46 84.65 0.46 -2.38 16 15 N -0.95 -61.41 13.65 21.45 0.29 -61.12 16 16 Si 1.11 52.82 29.90 68.60 2.05 54.87 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.11 -3.93 3.16 -19.87 -0.06 -3.99 16 21 C -0.12 -4.06 8.79 22.27 0.20 -3.86 16 22 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 24 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 25 C -0.13 -4.22 9.67 22.27 0.22 -4.00 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.87 7.42 -2.38 -0.02 1.85 16 29 H 0.06 1.80 7.73 -2.39 -0.02 1.78 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.21 6.13 -2.38 -0.01 1.20 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.34 12.98 5.42 -89.70 -0.49 12.49 16 37 H -0.02 -1.10 8.00 -2.39 -0.02 -1.12 16 38 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 39 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 40 H 0.11 3.71 6.53 -2.91 -0.02 3.70 16 41 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 44 H 0.12 3.58 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -68.80 353.31 3.65 -65.15 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.57 Total: 27.74 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 4.55 Total: -46.90 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.14 Total: -88.87 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.38 Total: -12.00 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.05 Total: 54.87 kcal Total: -68.80 3.65 -65.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.338 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds