Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47500 * 2 1 4 4 H 1.09004 * 109.46927 * 305.61749 * 3 2 1 5 5 C 1.52988 * 109.47293 * 185.61646 * 3 2 1 6 6 O 1.42908 * 109.47488 * 305.00226 * 5 3 2 7 7 C 1.42894 * 113.99948 * 180.02562 * 6 5 3 8 8 N 1.46899 * 109.46633 * 65.61325 * 3 2 1 9 9 C 1.46901 * 111.00007 * 205.08860 * 8 3 2 10 10 H 1.09006 * 109.47375 * 323.74439 * 9 8 3 11 11 C 1.52998 * 109.47621 * 203.74163 * 9 8 3 12 12 C 1.50701 * 109.47064 * 65.00135 * 11 9 8 13 13 H 1.08002 * 120.00090 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00281 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00134 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99752 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47310 * 89.99781 * 16 14 12 18 18 H 1.48499 * 109.47036 * 210.00200 * 16 14 12 19 19 H 1.48506 * 109.47044 * 329.99989 * 16 14 12 20 20 C 1.50708 * 109.47039 * 83.74038 * 9 8 3 21 21 C 1.38233 * 119.99599 * 46.15658 * 20 9 8 22 22 C 1.38235 * 120.00085 * 179.81211 * 21 20 9 23 23 C 1.38239 * 119.99723 * 0.39663 * 22 21 20 24 24 C 1.38242 * 119.99702 * 359.85681 * 23 22 21 25 25 C 1.38227 * 120.00255 * 226.43245 * 20 9 8 26 26 H 1.09002 * 109.47053 * 302.41939 * 1 2 3 27 27 H 1.08998 * 109.46951 * 62.41917 * 1 2 3 28 28 H 1.08998 * 109.47237 * 182.42186 * 1 2 3 29 29 H 1.08998 * 109.46966 * 240.00013 * 2 1 3 30 30 H 1.09004 * 109.47215 * 120.00048 * 2 1 3 31 31 H 1.09002 * 109.47448 * 184.99827 * 5 3 2 32 32 H 1.09003 * 109.47339 * 65.00078 * 5 3 2 33 33 H 1.09000 * 109.47656 * 59.99679 * 7 6 5 34 34 H 1.08998 * 109.46959 * 299.99375 * 7 6 5 35 35 H 1.09001 * 109.46696 * 179.97438 * 7 6 5 36 36 H 1.00893 * 111.00536 * 329.04561 * 8 3 2 37 37 H 1.08996 * 109.47646 * 185.00215 * 11 9 8 38 38 H 1.09003 * 109.47144 * 305.00264 * 11 9 8 39 39 H 0.97003 * 120.00107 * 180.02562 * 15 14 12 40 40 H 1.08006 * 120.00203 * 359.97438 * 21 20 9 41 41 H 1.08001 * 120.00305 * 180.23396 * 22 21 20 42 42 H 1.07997 * 120.00225 * 179.83760 * 23 22 21 43 43 H 1.08000 * 119.99153 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00152 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5970 1.9846 -0.8354 5 6 3.5635 1.4447 -0.1412 6 8 4.1385 0.6370 0.8880 7 6 5.5654 0.5719 0.8467 8 7 1.6642 2.0947 1.2614 9 6 1.5817 3.5521 1.0964 10 1 2.3576 3.8842 0.4067 11 6 1.7805 4.2311 2.4530 12 6 3.1787 3.9646 2.9480 13 1 3.8577 3.3706 2.3542 14 6 3.5911 4.4789 4.1589 15 7 4.8114 4.2467 4.5906 16 14 2.4165 5.5056 5.1863 17 1 1.6564 4.6190 6.1035 18 1 3.1885 6.4947 5.9806 19 1 1.4706 6.2196 4.2913 20 6 0.2282 3.9193 0.5444 21 6 -0.9140 3.3601 1.0861 22 6 -2.1557 3.6998 0.5825 23 6 -2.2546 4.5925 -0.4684 24 6 -1.1119 5.1477 -1.0135 25 6 0.1294 4.8109 -0.5072 26 1 -0.3633 0.5510 0.8675 27 1 -0.3633 0.4758 -0.9109 28 1 -0.3633 -1.0267 0.0434 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9352 2.4656 -0.0522 32 1 3.8387 1.0416 -1.1158 33 1 5.9782 1.5747 0.9564 34 1 5.8824 0.1509 -0.1074 35 1 5.9239 -0.0592 1.6598 36 1 0.7969 1.7214 1.6171 37 1 1.6314 5.3056 2.3468 38 1 1.0600 3.8332 3.1676 39 1 5.1015 4.6083 5.4428 40 1 -0.8365 2.6597 1.9047 41 1 -3.0483 3.2658 1.0082 42 1 -3.2245 4.8560 -0.8636 43 1 -1.1893 5.8449 -1.8347 44 1 1.0220 5.2447 -0.9331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = -26.404590 kcal Electronic energy + Delta-G solvation = -22556.757925 eV Core-core repulsion = 19473.827689 eV Total energy + Delta-G solvation = -3082.930236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.47717 -37.84032 -36.07284 -33.92690 -32.16668 -30.72036 -30.15826 -29.14073 -28.02384 -25.59145 -24.43141 -23.09246 -22.39073 -21.65297 -19.84418 -19.55590 -17.16462 -16.31509 -16.11816 -15.45466 -15.09445 -14.85437 -14.65876 -14.46384 -14.11041 -13.89991 -13.26013 -13.15326 -12.96254 -12.74158 -12.48758 -12.36428 -12.21151 -11.78430 -11.58028 -11.22227 -11.14256 -10.97271 -10.88347 -10.72634 -10.56608 -10.27535 -10.01465 -9.99085 -9.64461 -9.03876 -8.95227 -8.71315 -8.37609 -8.34539 -7.61692 -5.84773 -3.77797 1.60195 1.60933 3.40505 3.47557 3.51023 4.01804 4.38294 4.59954 4.74439 5.06073 5.09876 5.12411 5.20146 5.26888 5.35555 5.36746 5.49693 5.65428 5.73209 5.73541 5.79810 5.82118 5.85403 5.95277 6.02939 6.04294 6.12045 6.21372 6.23165 6.28653 6.30693 6.37945 6.57248 6.65253 6.68086 6.72376 6.88552 7.21012 7.23180 7.32496 7.73801 7.89264 7.96661 8.12228 8.77786 9.29163 9.78424 11.29191 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.008430 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.620092 B = 3320.675885 C = 5269.430335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.091 3.909 4 H 0.047 0.953 5 C 0.077 3.923 6 O -0.363 6.363 7 C 0.035 3.965 8 N -0.643 5.643 9 C 0.137 3.863 10 H 0.077 0.923 11 C 0.005 3.995 12 C -0.483 4.483 13 H 0.082 0.918 14 C 0.063 3.937 15 N -0.908 5.908 16 Si 0.869 3.131 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.269 1.269 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.334 0.666 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.258 0.742 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -4.788 -12.548 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.020 4.020 4 H 0.065 0.935 5 C -0.001 4.001 6 O -0.281 6.281 7 C -0.062 4.062 8 N -0.275 5.275 9 C 0.027 3.973 10 H 0.096 0.904 11 C -0.033 4.033 12 C -0.522 4.522 13 H 0.100 0.900 14 C -0.137 4.137 15 N -0.548 5.548 16 Si 0.698 3.302 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.194 1.194 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.972 -4.855 -12.003 15.752 hybrid contribution -1.217 0.927 0.012 1.530 sum -10.189 -3.928 -11.991 16.218 Atomic orbital electron populations 1.21845 0.96463 1.01302 1.01533 1.21577 0.94892 0.96412 1.02957 1.21542 0.93631 0.94600 0.92196 0.93496 1.22496 0.93582 0.95006 0.89020 1.87976 1.18600 1.69370 1.52143 1.22634 0.82405 1.01183 0.99934 1.60601 1.38255 1.02814 1.25810 1.20787 0.89427 0.87829 0.99227 0.90449 1.19577 0.98514 0.94377 0.90832 1.21009 0.95885 1.30931 1.04334 0.90045 1.24955 0.94794 0.96357 0.97554 1.69902 1.17327 1.46707 1.20896 0.86951 0.81640 0.80767 0.80868 1.20602 1.21765 1.19383 1.21259 0.97948 0.95819 0.94760 1.20990 0.92143 1.00568 0.99832 1.21068 0.97282 0.98377 0.97003 1.21023 0.98067 0.98588 0.97671 1.21089 0.92780 0.99990 1.00076 1.21114 0.97492 0.98166 0.96842 0.92605 0.93275 0.92856 0.92145 0.90041 0.92990 0.94812 0.93841 0.95633 0.90202 0.84464 0.96585 0.96962 0.93208 0.86199 0.86584 0.86775 0.86640 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.79 37.16 0.36 -1.49 16 2 C -0.12 -1.65 5.22 -26.73 -0.14 -1.79 16 3 C 0.09 1.43 2.24 -67.72 -0.15 1.28 16 4 H 0.05 0.71 7.59 -51.93 -0.39 0.32 16 5 C 0.08 1.28 5.67 37.15 0.21 1.49 16 6 O -0.36 -6.86 9.88 -35.23 -0.35 -7.21 16 7 C 0.04 0.57 11.01 101.05 1.11 1.69 16 8 N -0.64 -11.86 5.71 -100.95 -0.58 -12.43 16 9 C 0.14 2.66 1.98 -68.86 -0.14 2.52 16 10 H 0.08 1.54 6.90 -51.93 -0.36 1.18 16 11 C 0.00 0.11 3.63 -27.88 -0.10 0.01 16 12 C -0.48 -13.68 9.39 -34.44 -0.32 -14.00 16 13 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 14 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 15 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 16 Si 0.87 22.28 27.47 -169.99 -4.67 17.62 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 19 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 20 C -0.10 -1.59 4.53 -104.62 -0.47 -2.07 16 21 C -0.12 -1.79 8.86 -39.58 -0.35 -2.14 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.14 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 25 C -0.12 -1.77 9.67 -39.59 -0.38 -2.15 16 26 H 0.06 0.70 6.25 -51.93 -0.32 0.38 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 31 H 0.05 0.96 7.37 -51.93 -0.38 0.58 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.33 5.77 4.43 -39.30 -0.17 5.59 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.12 1.80 6.85 -52.48 -0.36 1.44 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.67 7.99 -52.49 -0.42 1.25 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -31.78 352.73 -8.56 -40.35 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.40 Total: 4.95 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.66 Total: -20.97 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.20 Total: -40.04 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.35 Total: -7.21 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.78 -8.56 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.944 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds