Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47142 * 2 1 4 4 N 1.46501 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99802 * 269.49522 * 4 3 2 6 6 H 1.07997 * 120.00616 * 325.90803 * 5 4 3 7 7 C 1.38814 * 119.99702 * 145.91152 * 5 4 3 8 8 N 1.31615 * 120.00230 * 336.75941 * 7 5 4 9 9 Si 1.86804 * 120.00052 * 156.75936 * 7 5 4 10 10 H 1.48499 * 109.47021 * 89.99930 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00129 * 9 7 5 12 12 H 1.48498 * 109.46846 * 330.00095 * 9 7 5 13 13 C 1.46501 * 120.00024 * 89.49351 * 4 3 2 14 14 C 1.50696 * 109.46901 * 90.00187 * 13 4 3 15 15 C 1.38264 * 119.94280 * 269.72373 * 14 13 4 16 16 C 1.38148 * 120.05502 * 179.72742 * 15 14 13 17 17 C 1.50694 * 120.03010 * 180.27501 * 16 15 14 18 18 C 1.38730 * 119.94075 * 0.55180 * 16 15 14 19 19 O 1.35904 * 120.05676 * 179.74883 * 18 16 15 20 20 C 1.42903 * 117.00014 * 269.97960 * 19 18 16 21 21 C 1.38731 * 119.89406 * 359.72233 * 18 16 15 22 22 C 1.50704 * 120.03267 * 179.97438 * 21 18 16 23 23 C 1.38147 * 119.93864 * 0.02562 * 21 18 16 24 24 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46955 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.47243 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.46955 * 240.00060 * 2 1 3 28 28 H 1.09002 * 109.47275 * 120.00266 * 2 1 3 29 29 H 1.09000 * 109.47146 * 60.00178 * 3 2 1 30 30 H 1.09002 * 109.47253 * 300.00280 * 3 2 1 31 31 H 0.97006 * 120.00435 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46724 * 210.00431 * 13 4 3 33 33 H 1.08998 * 109.46907 * 330.00247 * 13 4 3 34 34 H 1.07997 * 119.97501 * 0.02562 * 15 14 13 35 35 H 1.09000 * 109.47374 * 270.27631 * 17 16 15 36 36 H 1.08995 * 109.47586 * 30.27520 * 17 16 15 37 37 H 1.08997 * 109.47350 * 150.27593 * 17 16 15 38 38 H 1.09000 * 109.47489 * 59.99183 * 20 19 18 39 39 H 1.08993 * 109.47392 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46521 * 299.99509 * 20 19 18 41 41 H 1.08994 * 109.46693 * 270.02256 * 22 21 18 42 42 H 1.08992 * 109.46570 * 30.02484 * 22 21 18 43 43 H 1.08999 * 109.46778 * 150.02537 * 22 21 18 44 44 H 1.08006 * 119.97214 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4528 1.1850 6 1 3.7898 1.9844 2.0355 7 6 5.3995 0.7800 1.2936 8 7 5.6762 -0.2126 0.4747 9 14 6.6341 1.2832 2.6020 10 1 6.3783 0.5136 3.8460 11 1 8.0097 1.0008 2.1192 12 1 6.4957 2.7352 2.8808 13 6 4.2370 1.4315 -1.2696 14 6 4.4879 2.8485 -1.7170 15 6 3.5677 3.4902 -2.5252 16 6 3.7927 4.7911 -2.9321 17 6 2.7865 5.4921 -3.8078 18 6 4.9486 5.4496 -2.5385 19 8 5.1748 6.7276 -2.9416 20 6 5.8827 6.9047 -4.1702 21 6 5.8731 4.8016 -1.7322 22 6 7.1301 5.5138 -1.3033 23 6 5.6409 3.5025 -1.3238 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.5215 -0.6825 0.5503 32 1 5.1894 0.9188 -1.1352 33 1 3.6476 0.9111 -2.0245 34 1 2.6700 2.9758 -2.8347 35 1 3.0279 5.3113 -4.8552 36 1 1.7889 5.1089 -3.5936 37 1 2.8148 6.5633 -3.6081 38 1 5.3257 6.4359 -4.9814 39 1 5.9949 7.9694 -4.3747 40 1 6.8674 6.4438 -4.0917 41 1 7.9167 5.3355 -2.0363 42 1 6.9351 6.5837 -1.2323 43 1 7.4473 5.1369 -0.3309 44 1 6.3601 2.9976 -0.6957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -13.729467 kcal Electronic energy + Delta-G solvation = -22311.395788 eV Core-core repulsion = 19229.015187 eV Total energy + Delta-G solvation = -3082.380601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.77873 -37.29724 -35.77180 -33.17555 -32.92924 -31.57472 -30.07522 -27.78252 -26.65384 -26.22607 -25.48456 -24.82286 -22.08988 -20.55717 -20.39068 -19.48226 -17.22623 -16.73011 -16.06096 -15.38329 -14.83030 -14.29956 -14.04307 -13.88040 -13.64212 -13.51492 -13.30631 -13.05332 -12.93226 -12.73838 -12.44411 -12.32294 -11.91663 -11.68322 -11.56040 -11.32173 -11.09597 -11.01566 -10.88610 -10.71587 -10.69489 -10.32447 -10.27567 -9.94473 -9.87697 -9.66239 -9.57219 -8.52244 -8.01851 -7.74496 -6.64691 -5.82532 -3.33085 1.78685 1.93207 3.33368 3.42010 3.46833 3.89519 4.38186 4.50084 5.18368 5.25956 5.28992 5.35414 5.39801 5.49414 5.59196 5.60522 5.71743 5.76387 5.79862 5.84827 5.87791 5.92241 6.03440 6.08405 6.15539 6.20875 6.30650 6.31190 6.42643 6.49269 6.56014 6.63477 6.70726 6.81848 7.02908 7.06710 7.09448 7.26427 7.36893 7.42099 7.69792 7.80544 7.96666 8.47571 9.14625 9.78835 10.35348 11.17965 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.006709 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.945699 B = 4172.479831 C = 5774.220405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.575 5.575 5 C -0.249 4.249 6 H 0.061 0.939 7 C 0.010 3.990 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.170 3.830 14 C -0.064 4.064 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.105 4.105 18 C 0.063 3.937 19 O -0.335 6.335 20 C 0.036 3.964 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.091 4.091 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.255 0.745 32 H 0.108 0.892 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 8.678 -8.595 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.293 5.293 5 C -0.379 4.379 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.527 5.527 9 Si 0.716 3.284 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.044 3.956 14 C -0.067 4.067 15 C -0.135 4.135 16 C -0.108 4.108 17 C -0.161 4.161 18 C 0.020 3.980 19 O -0.252 6.252 20 C -0.059 4.059 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.110 4.110 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.965 8.708 -8.484 12.315 hybrid contribution 0.771 0.024 0.570 0.959 sum -1.194 8.732 -7.914 11.845 Atomic orbital electron populations 1.21755 0.97799 1.00288 1.00671 1.22078 0.93002 1.00794 1.02088 1.20934 0.85065 0.93408 0.98293 1.43780 0.99373 1.84415 1.01768 1.19046 1.03014 1.25348 0.90442 0.92161 1.25016 1.00637 0.95249 0.98100 1.69977 1.23740 1.19216 1.39779 0.86533 0.81137 0.78917 0.81770 1.21239 1.21376 1.20205 1.20077 1.00871 0.88294 0.86321 1.21275 0.92236 1.00555 0.92632 1.20817 0.99572 0.93401 0.99734 1.20009 0.96171 0.94496 1.00125 1.20607 0.97227 1.00434 0.97877 1.18126 0.94647 0.84740 1.00520 1.85966 1.76193 1.23393 1.39632 1.22884 0.95545 1.01686 0.85740 1.20124 0.96328 0.94622 0.99441 1.20639 0.94420 1.00247 1.01116 1.20897 0.98013 0.92890 0.99217 0.93888 0.93440 0.93697 0.93057 0.91870 0.94023 0.94886 0.93513 0.87421 0.94856 0.86717 0.92212 0.91895 0.91537 0.94064 0.89627 0.93985 0.92118 0.91522 0.91601 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.72 6.26 -26.73 -0.17 -2.89 16 3 C 0.15 3.12 5.67 -4.04 -0.02 3.10 16 4 N -0.57 -13.90 2.43 -174.61 -0.43 -14.32 16 5 C -0.25 -6.62 9.48 -15.06 -0.14 -6.76 16 6 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 7 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 8 N -0.88 -24.44 11.34 55.49 0.63 -23.81 16 9 Si 0.89 21.11 29.61 -169.99 -5.03 16.08 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.17 3.91 5.42 -5.19 -0.03 3.88 16 14 C -0.06 -1.33 5.46 -104.60 -0.57 -1.90 16 15 C -0.12 -2.14 9.35 -39.60 -0.37 -2.51 16 16 C -0.11 -1.84 5.89 -104.48 -0.62 -2.45 16 17 C -0.10 -1.42 9.79 36.00 0.35 -1.06 16 18 C 0.06 1.11 5.67 -39.22 -0.22 0.88 16 19 O -0.33 -5.25 8.51 -19.44 -0.17 -5.41 16 20 C 0.04 0.42 11.13 101.05 1.12 1.55 16 21 C -0.10 -1.92 5.89 -104.47 -0.62 -2.54 16 22 C -0.11 -1.66 9.79 36.01 0.35 -1.31 16 23 C -0.09 -1.88 9.35 -39.60 -0.37 -2.25 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 30 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.11 2.78 5.27 -51.93 -0.27 2.50 16 33 H 0.03 0.73 8.01 -51.93 -0.42 0.31 16 34 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 43 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.12 2.69 8.06 -52.48 -0.42 2.26 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -28.33 361.64 -8.33 -36.66 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.77 Total: 1.35 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.01 Total: -15.99 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.20 Total: -38.14 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.17 Total: -5.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.33 -8.33 -36.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.932 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds