Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47142 * 2 1 4 4 N 1.46501 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99802 * 269.49522 * 4 3 2 6 6 H 1.07997 * 120.00616 * 325.90803 * 5 4 3 7 7 C 1.38814 * 119.99702 * 145.91152 * 5 4 3 8 8 N 1.31615 * 120.00230 * 336.75941 * 7 5 4 9 9 Si 1.86804 * 120.00052 * 156.75936 * 7 5 4 10 10 H 1.48499 * 109.47021 * 89.99930 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00129 * 9 7 5 12 12 H 1.48498 * 109.46846 * 330.00095 * 9 7 5 13 13 C 1.46501 * 120.00024 * 89.49351 * 4 3 2 14 14 C 1.50696 * 109.46901 * 90.00187 * 13 4 3 15 15 C 1.38264 * 119.94280 * 269.72373 * 14 13 4 16 16 C 1.38148 * 120.05502 * 179.72742 * 15 14 13 17 17 C 1.50694 * 120.03010 * 180.27501 * 16 15 14 18 18 C 1.38730 * 119.94075 * 0.55180 * 16 15 14 19 19 O 1.35904 * 120.05676 * 179.74883 * 18 16 15 20 20 C 1.42903 * 117.00014 * 269.97960 * 19 18 16 21 21 C 1.38731 * 119.89406 * 359.72233 * 18 16 15 22 22 C 1.50704 * 120.03267 * 179.97438 * 21 18 16 23 23 C 1.38147 * 119.93864 * 0.02562 * 21 18 16 24 24 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46955 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.47243 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.46955 * 240.00060 * 2 1 3 28 28 H 1.09002 * 109.47275 * 120.00266 * 2 1 3 29 29 H 1.09000 * 109.47146 * 60.00178 * 3 2 1 30 30 H 1.09002 * 109.47253 * 300.00280 * 3 2 1 31 31 H 0.97006 * 120.00435 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46724 * 210.00431 * 13 4 3 33 33 H 1.08998 * 109.46907 * 330.00247 * 13 4 3 34 34 H 1.07997 * 119.97501 * 0.02562 * 15 14 13 35 35 H 1.09000 * 109.47374 * 270.27631 * 17 16 15 36 36 H 1.08995 * 109.47586 * 30.27520 * 17 16 15 37 37 H 1.08997 * 109.47350 * 150.27593 * 17 16 15 38 38 H 1.09000 * 109.47489 * 59.99183 * 20 19 18 39 39 H 1.08993 * 109.47392 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46521 * 299.99509 * 20 19 18 41 41 H 1.08994 * 109.46693 * 270.02256 * 22 21 18 42 42 H 1.08992 * 109.46570 * 30.02484 * 22 21 18 43 43 H 1.08999 * 109.46778 * 150.02537 * 22 21 18 44 44 H 1.08006 * 119.97214 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4528 1.1850 6 1 3.7898 1.9844 2.0355 7 6 5.3995 0.7800 1.2936 8 7 5.6762 -0.2126 0.4747 9 14 6.6341 1.2832 2.6020 10 1 6.3783 0.5136 3.8460 11 1 8.0097 1.0008 2.1192 12 1 6.4957 2.7352 2.8808 13 6 4.2370 1.4315 -1.2696 14 6 4.4879 2.8485 -1.7170 15 6 3.5677 3.4902 -2.5252 16 6 3.7927 4.7911 -2.9321 17 6 2.7865 5.4921 -3.8078 18 6 4.9486 5.4496 -2.5385 19 8 5.1748 6.7276 -2.9416 20 6 5.8827 6.9047 -4.1702 21 6 5.8731 4.8016 -1.7322 22 6 7.1301 5.5138 -1.3033 23 6 5.6409 3.5025 -1.3238 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.5215 -0.6825 0.5503 32 1 5.1894 0.9188 -1.1352 33 1 3.6476 0.9111 -2.0245 34 1 2.6700 2.9758 -2.8347 35 1 3.0279 5.3113 -4.8552 36 1 1.7889 5.1089 -3.5936 37 1 2.8148 6.5633 -3.6081 38 1 5.3257 6.4359 -4.9814 39 1 5.9949 7.9694 -4.3747 40 1 6.8674 6.4438 -4.0917 41 1 7.9167 5.3355 -2.0363 42 1 6.9351 6.5837 -1.2323 43 1 7.4473 5.1369 -0.3309 44 1 6.3601 2.9976 -0.6957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = -26.535640 kcal Electronic energy + Delta-G solvation = -22311.951106 eV Core-core repulsion = 19229.015187 eV Total energy + Delta-G solvation = -3082.935919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12699 -38.75832 -37.38555 -34.66628 -34.43109 -33.26728 -31.71033 -28.87980 -28.05516 -27.63860 -27.19316 -26.23091 -23.78491 -22.04485 -21.79828 -21.12666 -18.65901 -18.51226 -17.44138 -16.72801 -16.51770 -15.96785 -15.70804 -15.48834 -14.94459 -14.87389 -14.77688 -14.33074 -14.19782 -14.05302 -13.83920 -13.64364 -13.31999 -13.18729 -12.88235 -12.79015 -12.72228 -12.54436 -12.39657 -12.38152 -12.14137 -12.00630 -11.84543 -11.72016 -11.66347 -11.31818 -10.78823 -10.53076 -9.42819 -9.19297 -8.60676 -7.84261 -5.38645 0.37385 0.49242 1.40498 1.44590 1.53569 2.47846 2.60028 3.05623 3.24619 3.83768 3.91679 3.94604 4.16474 4.27413 4.42866 4.44644 4.49015 4.52566 4.54823 4.64001 4.68631 4.70954 4.72378 4.77109 4.80401 4.83234 4.85571 4.94086 4.97199 5.04481 5.17661 5.21476 5.27472 5.40023 5.46536 5.57678 5.60155 5.62689 5.64305 5.77963 5.94596 6.00394 6.46527 6.69394 7.15272 7.85943 8.37120 9.12744 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.006709 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.945699 B = 4172.479831 C = 5774.220405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.147 3.853 4 N -0.589 5.589 5 C -0.256 4.256 6 H 0.049 0.951 7 C -0.029 4.029 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.178 3.822 14 C -0.082 4.082 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.101 4.101 18 C 0.068 3.932 19 O -0.344 6.344 20 C 0.029 3.971 21 C -0.113 4.113 22 C -0.104 4.104 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.252 0.748 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 10.807 -10.083 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.022 3.978 4 N -0.309 5.309 5 C -0.387 4.387 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.554 5.554 9 Si 0.768 3.232 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.052 3.948 14 C -0.085 4.085 15 C -0.137 4.137 16 C -0.107 4.107 17 C -0.157 4.157 18 C 0.024 3.976 19 O -0.261 6.261 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.160 4.160 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.020 10.854 -9.985 15.054 hybrid contribution 1.086 -0.527 0.930 1.523 sum -1.935 10.327 -9.055 13.870 Atomic orbital electron populations 1.21658 0.94136 1.01689 1.01983 1.21919 0.96138 0.99143 0.99827 1.21047 0.83443 0.94410 0.98943 1.43960 1.00681 1.84797 1.01422 1.19135 1.03611 1.24794 0.91152 0.93306 1.25530 1.01832 0.95348 0.99892 1.70085 1.23821 1.20219 1.41310 0.85718 0.79315 0.78384 0.79816 1.21071 1.21339 1.20168 1.19836 0.99164 0.89760 0.85995 1.21033 0.93497 0.99422 0.94573 1.20912 0.99403 0.94163 0.99172 1.20397 0.96667 0.93966 0.99708 1.20659 0.96651 1.00218 0.98171 1.18240 0.94342 0.85288 0.99693 1.85931 1.76780 1.21865 1.41525 1.23166 0.95290 1.03858 0.84125 1.20369 0.97734 0.93905 0.99374 1.20654 0.93736 1.00375 1.01253 1.20764 0.97998 0.94222 1.00253 0.92494 0.92665 0.91799 0.94298 0.95133 0.94420 0.92944 0.93897 0.90631 0.94504 0.85250 0.90110 0.90676 0.91026 0.93132 0.86653 0.93742 0.90214 0.90440 0.92306 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.13 -5.10 6.26 30.59 0.19 -4.91 16 3 C 0.15 6.16 5.67 86.38 0.49 6.65 16 4 N -0.59 -29.30 2.43 -706.36 -1.72 -31.02 16 5 C -0.26 -14.13 9.48 84.03 0.80 -13.33 16 6 H 0.05 2.75 7.93 -2.91 -0.02 2.72 16 7 C -0.03 -1.58 4.94 84.86 0.42 -1.16 16 8 N -0.91 -52.42 11.34 21.65 0.25 -52.17 16 9 Si 0.94 44.81 29.61 68.60 2.03 46.84 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 C 0.18 8.47 5.42 85.63 0.46 8.94 16 14 C -0.08 -3.49 5.46 -19.85 -0.11 -3.59 16 15 C -0.12 -4.20 9.35 22.25 0.21 -3.99 16 16 C -0.11 -3.40 5.89 -19.77 -0.12 -3.52 16 17 C -0.10 -2.34 9.79 71.23 0.70 -1.65 16 18 C 0.07 2.25 5.67 22.51 0.13 2.38 16 19 O -0.34 -9.72 8.51 -92.47 -0.79 -10.51 16 20 C 0.03 0.58 11.13 113.37 1.26 1.84 16 21 C -0.11 -4.10 5.89 -19.77 -0.12 -4.22 16 22 C -0.10 -3.09 9.79 71.24 0.70 -2.39 16 23 C -0.11 -4.80 9.35 22.25 0.21 -4.60 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 30 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.08 4.12 5.27 -2.39 -0.01 4.11 16 33 H 0.04 1.65 8.01 -2.39 -0.02 1.63 16 34 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 37 H 0.07 1.62 7.53 -2.39 -0.02 1.60 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.12 7.53 -2.39 -0.02 2.10 16 43 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 44 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -62.84 361.64 6.65 -56.19 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.94 Total: 17.46 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 5.93 Total: -26.79 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.47 Total: -83.19 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.79 Total: -10.51 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.84 6.65 -56.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.655 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds