Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52390 * 2 1 4 4 C 1.53120 * 109.57385 * 239.83757 * 2 1 3 5 5 C 1.53035 * 109.27899 * 182.40817 * 4 2 1 6 6 N 1.46848 * 109.52371 * 59.18286 * 5 4 2 7 7 C 1.46897 * 111.00366 * 174.15982 * 6 5 4 8 8 C 1.52990 * 109.47259 * 294.21107 * 7 6 5 9 9 C 1.52997 * 109.47594 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47882 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99292 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00379 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99834 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46970 * 89.99887 * 14 12 10 16 16 H 1.48501 * 109.47117 * 209.99501 * 14 12 10 17 17 H 1.48491 * 109.47329 * 329.99701 * 14 12 10 18 18 C 1.46853 * 111.19643 * 298.25976 * 6 5 4 19 19 H 1.09006 * 109.45925 * 181.75362 * 18 6 5 20 20 C 1.50697 * 109.46149 * 301.72505 * 18 6 5 21 21 C 1.34520 * 125.78671 * 229.35579 * 20 18 6 22 22 C 1.41382 * 106.84054 * 180.02562 * 21 20 18 23 23 C 1.34515 * 106.83877 * 359.97438 * 22 21 20 24 24 O 1.34293 * 125.79242 * 49.04449 * 20 18 6 25 25 C 1.53041 * 109.52407 * 61.74000 * 18 6 5 26 26 H 1.09001 * 109.47322 * 299.87520 * 1 2 3 27 27 H 1.08997 * 109.47347 * 59.87672 * 1 2 3 28 28 H 1.09002 * 109.47447 * 179.87036 * 1 2 3 29 29 H 1.09001 * 109.50826 * 302.35462 * 4 2 1 30 30 H 1.09000 * 109.50029 * 62.43337 * 4 2 1 31 31 H 1.08998 * 109.46636 * 299.16813 * 5 4 2 32 32 H 1.09003 * 109.46766 * 179.19463 * 5 4 2 33 33 H 1.09007 * 109.47423 * 174.20845 * 7 6 5 34 34 H 1.09000 * 109.47117 * 54.21304 * 7 6 5 35 35 H 1.09000 * 109.47642 * 299.99807 * 8 7 6 36 36 H 1.09006 * 109.47560 * 59.99844 * 8 7 6 37 37 H 1.09000 * 109.47010 * 300.00338 * 9 8 7 38 38 H 1.09007 * 109.47195 * 59.99673 * 9 8 7 39 39 H 0.96997 * 119.99839 * 180.02562 * 13 12 10 40 40 H 1.07999 * 126.57752 * 0.03303 * 21 20 18 41 41 H 1.08000 * 126.58132 * 180.02562 * 22 21 20 42 42 H 1.08005 * 125.78969 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.50298 * 60.76366 * 25 18 6 44 44 H 1.09000 * 109.50238 * 180.87640 * 25 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7249 -1.2474 5 6 3.5721 -0.7736 -1.2104 6 7 4.0115 -1.4767 0.0016 7 6 5.4685 -1.6643 0.0024 8 6 5.8618 -2.6084 -1.1355 9 6 7.3793 -2.8033 -1.1351 10 6 7.7667 -3.7337 -2.2555 11 1 7.0065 -4.1446 -2.9034 12 6 9.0916 -4.0596 -2.4541 13 7 9.4296 -4.8712 -3.4323 14 14 10.4064 -3.3484 -1.3339 15 1 10.6143 -4.2554 -0.1766 16 1 11.6777 -3.2097 -2.0887 17 1 9.9725 -2.0148 -0.8459 18 6 3.5708 -0.7731 1.2129 19 1 3.9378 -1.3009 2.0932 20 6 4.1179 0.6310 1.2050 21 6 4.7632 1.2295 2.2223 22 6 5.0968 2.5323 1.7859 23 6 4.6359 2.6517 0.5278 24 8 4.0491 1.4950 0.1792 25 6 2.0416 -0.7244 1.2482 26 1 -0.3634 0.5119 0.8911 27 1 -0.3634 0.5157 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 1.6468 -1.7402 -1.2671 30 1 1.7168 -0.1897 -2.1392 31 1 3.9678 0.2419 -1.2047 32 1 3.9401 -1.3017 -2.0901 33 1 5.7790 -2.0941 0.9548 34 1 5.9589 -0.7012 -0.1387 35 1 5.3714 -3.5716 -0.9945 36 1 5.5513 -2.1787 -2.0879 37 1 7.8694 -1.8400 -1.2764 38 1 7.6902 -3.2329 -0.1827 39 1 10.3617 -5.1007 -3.5718 40 1 4.9841 0.7977 3.1873 41 1 5.6217 3.2865 2.3533 42 1 4.7267 3.5275 -0.0977 43 1 1.6455 -1.7397 1.2679 44 1 1.7151 -0.1885 2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110642780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = 0.909964 kcal Electronic energy + Delta-G solvation = -22396.961211 eV Core-core repulsion = 19315.215423 eV Total energy + Delta-G solvation = -3081.745788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.74033 -39.18406 -35.43757 -33.50817 -33.12036 -31.91646 -31.10502 -28.91066 -28.11963 -26.05702 -23.44583 -23.02772 -21.87498 -21.51679 -20.64765 -19.84800 -19.55787 -16.89823 -16.67783 -16.36390 -15.69585 -15.27482 -14.52417 -14.42529 -14.14040 -14.07923 -13.82009 -13.24365 -12.94614 -12.86885 -12.72602 -12.54172 -12.29320 -12.08436 -12.05804 -11.79861 -11.44339 -11.28846 -10.95498 -10.78768 -10.60902 -10.37938 -10.28244 -9.88965 -9.85239 -9.60371 -9.53839 -9.12958 -8.51153 -8.49921 -8.15676 -6.00577 -3.97939 1.73677 2.60752 2.95256 3.33034 3.40144 3.44648 4.08061 4.48608 4.51700 4.73796 4.77519 4.82722 5.01522 5.04850 5.17587 5.33450 5.36388 5.46810 5.58381 5.59614 5.61947 5.69534 5.70474 5.77746 5.82167 5.87837 5.91602 6.02716 6.06025 6.13099 6.17728 6.18589 6.23647 6.45053 6.50537 6.59653 6.64882 6.95467 7.09378 7.26726 7.29806 7.40156 7.50972 7.84297 8.59026 9.05132 9.62392 11.13067 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.004574 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.614837 B = 6120.357663 C = 6986.320096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.108 4.108 5 C 0.039 3.961 6 N -0.522 5.522 7 C 0.054 3.946 8 C -0.096 4.096 9 C -0.013 4.013 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.161 3.839 19 H 0.108 0.892 20 C -0.026 4.026 21 C -0.214 4.214 22 C -0.212 4.212 23 C -0.057 4.057 24 O -0.160 6.160 25 C -0.104 4.104 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.197 0.803 43 H 0.081 0.919 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.053 14.471 10.891 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.145 4.145 5 C -0.088 4.088 6 N -0.244 5.244 7 C -0.073 4.073 8 C -0.134 4.134 9 C -0.051 4.051 10 C -0.555 4.555 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.191 1.191 18 C 0.052 3.948 19 H 0.125 0.875 20 C -0.078 4.078 21 C -0.234 4.234 22 C -0.232 4.232 23 C -0.124 4.124 24 O -0.056 6.056 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.213 0.787 43 H 0.099 0.901 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.256 13.829 10.508 23.788 hybrid contribution 1.529 1.354 0.764 2.181 sum -14.726 15.183 11.272 23.967 Atomic orbital electron populations 1.21797 0.95310 1.01745 1.01287 1.21236 0.95254 0.99847 0.95120 0.90991 1.21606 0.95066 1.00875 0.96995 1.22457 0.95375 0.97720 0.93251 1.62168 1.14211 1.47011 1.01038 1.22320 0.84981 0.98962 1.01024 1.21475 0.98231 0.98070 0.95650 1.19547 0.91719 0.96711 0.97096 1.21146 0.93591 1.26996 1.13747 0.91024 1.25030 0.98626 0.94726 0.95145 1.69920 1.17691 1.35705 1.31125 0.86784 0.81244 0.80287 0.81010 1.20285 1.21439 1.19117 1.20705 0.95568 0.82884 0.95689 0.87453 1.23756 1.03156 0.94173 0.86751 1.21615 1.05444 0.95584 1.00803 1.21764 1.06417 0.98378 0.96597 1.24117 1.01479 0.89510 0.97339 1.84295 1.61861 1.21032 1.38451 1.21699 0.92763 1.01759 0.97974 0.93059 0.92856 0.92587 0.91174 0.91844 0.92767 0.89805 0.91247 0.95210 0.91929 0.92817 0.96957 0.97114 0.92811 0.83846 0.83895 0.78667 0.90080 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.10 -1.00 2.47 -90.50 -0.22 -1.23 16 3 H 0.07 0.84 6.11 -51.93 -0.32 0.52 16 4 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 5 C 0.04 0.55 4.99 -3.83 -0.02 0.53 16 6 N -0.52 -7.62 4.60 -228.08 -1.05 -8.67 16 7 C 0.05 0.92 4.56 -3.83 -0.02 0.91 16 8 C -0.10 -1.97 5.08 -26.74 -0.14 -2.11 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.91 -28.42 13.96 55.43 0.77 -27.64 16 14 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 18 C 0.16 1.98 2.81 -68.87 -0.19 1.79 16 19 H 0.11 1.23 7.98 -51.93 -0.41 0.81 16 20 C -0.03 -0.34 4.38 -35.62 -0.16 -0.49 16 21 C -0.21 -2.64 10.79 -39.70 -0.43 -3.07 16 22 C -0.21 -2.43 10.91 -39.70 -0.43 -2.87 16 23 C -0.06 -0.64 12.09 29.42 0.36 -0.29 16 24 O -0.16 -2.12 5.86 5.73 0.03 -2.08 16 25 C -0.10 -1.08 4.89 -26.65 -0.13 -1.21 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.81 4.92 -51.93 -0.26 0.55 16 32 H 0.08 1.29 6.21 -51.93 -0.32 0.97 16 33 H 0.07 1.14 7.99 -51.93 -0.41 0.73 16 34 H 0.03 0.54 7.60 -51.93 -0.39 0.14 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.11 6.43 -51.93 -0.33 0.77 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -31.68 336.97 -9.02 -40.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.46 Total: -0.60 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -1.73 Total: -24.33 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.28 Total: -36.31 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.68 -9.02 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110642780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.606 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds