Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46815 * 2 1 4 4 O 1.42894 * 109.47373 * 119.99769 * 2 1 3 5 5 C 1.35897 * 117.00110 * 84.84989 * 4 2 1 6 6 C 1.38755 * 120.05727 * 174.35235 * 5 4 2 7 7 C 1.38132 * 119.93909 * 179.70094 * 6 5 4 8 8 C 1.38280 * 120.05864 * 0.59238 * 7 6 5 9 9 C 1.38248 * 120.11174 * 359.67953 * 8 7 6 10 10 C 1.50702 * 119.97213 * 180.02562 * 9 8 7 11 11 N 1.46903 * 109.47273 * 269.97993 * 10 9 8 12 12 C 1.46898 * 110.99841 * 293.95703 * 11 10 9 13 13 C 1.46897 * 110.99920 * 170.00096 * 11 10 9 14 14 C 1.53004 * 109.46560 * 189.99813 * 13 11 10 15 15 C 1.50710 * 109.46538 * 179.97438 * 14 13 11 16 16 H 1.07990 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99846 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99882 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00206 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47133 * 89.99336 * 19 17 15 21 21 H 1.48495 * 109.47051 * 210.00156 * 19 17 15 22 22 H 1.48503 * 109.46886 * 329.99499 * 19 17 15 23 23 C 1.38166 * 120.05471 * 0.02562 * 9 8 7 24 24 H 1.09000 * 109.47469 * 60.00107 * 1 2 3 25 25 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46944 * 300.00044 * 1 2 3 27 27 H 1.09000 * 109.47347 * 240.00615 * 2 1 3 28 28 H 1.09005 * 109.46539 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47320 * 299.99718 * 3 2 1 30 30 H 1.08996 * 109.47037 * 60.00518 * 3 2 1 31 31 H 1.07992 * 120.03106 * 359.97124 * 6 5 4 32 32 H 1.08003 * 119.96727 * 180.29403 * 7 6 5 33 33 H 1.07999 * 119.94852 * 179.70385 * 8 7 6 34 34 H 1.08997 * 109.46968 * 29.98060 * 10 9 8 35 35 H 1.08997 * 109.46897 * 149.97844 * 10 9 8 36 36 H 1.09005 * 109.47477 * 59.99926 * 12 11 10 37 37 H 1.09004 * 109.47547 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47030 * 299.99788 * 12 11 10 39 39 H 1.08992 * 109.46786 * 309.99681 * 13 11 10 40 40 H 1.08995 * 109.47122 * 70.00186 * 13 11 10 41 41 H 1.08992 * 109.47464 * 299.99454 * 14 13 11 42 42 H 1.09001 * 109.47194 * 60.00787 * 14 13 11 43 43 H 0.97000 * 119.99681 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.02829 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 2.1095 -2.0269 1.0989 6 6 2.6742 -2.7344 2.1506 7 6 2.7723 -4.1105 2.0818 8 6 2.3195 -4.7819 0.9609 9 6 1.7616 -4.0788 -0.0906 10 6 1.2687 -4.8139 -1.3104 11 7 2.3596 -4.9279 -2.2876 12 6 2.7421 -3.6077 -2.8059 13 6 1.9933 -5.8371 -3.3817 14 6 3.2272 -6.1262 -4.2390 15 6 2.8516 -7.0595 -5.3612 16 1 1.8348 -7.4116 -5.4532 17 6 3.8064 -7.4648 -6.2696 18 7 5.0448 -7.0364 -6.1571 19 14 3.3408 -8.6210 -7.6608 20 1 2.9118 -7.8281 -8.8408 21 1 4.5141 -9.4552 -8.0248 22 1 2.2261 -9.4990 -7.2227 23 6 1.6557 -2.7029 -0.0241 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.0327 -2.2100 3.0239 32 1 3.2074 -4.6620 2.9021 33 1 2.4014 -5.8575 0.9070 34 1 0.9326 -5.8101 -1.0231 35 1 0.4387 -4.2646 -1.7548 36 1 3.0754 -2.9765 -1.9821 37 1 3.5512 -3.7211 -3.5275 38 1 1.8834 -3.1458 -3.2931 39 1 1.6126 -6.7702 -2.9665 40 1 1.2235 -5.3727 -3.9978 41 1 3.6079 -5.1931 -4.6542 42 1 3.9971 -6.5908 -3.6229 43 1 5.7164 -7.3212 -6.7964 44 1 1.2194 -2.1540 -0.8457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120705880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = -22.923621 kcal Electronic energy + Delta-G solvation = -21366.694155 eV Core-core repulsion = 18283.914865 eV Total energy + Delta-G solvation = -3082.779290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39905 -38.25084 -36.66863 -33.56151 -33.03870 -31.52485 -29.89454 -29.23172 -27.53259 -26.93274 -25.23884 -23.32774 -22.86958 -20.98287 -20.88161 -19.88902 -17.88200 -16.48033 -16.21073 -15.81464 -15.59413 -14.96365 -14.74968 -14.59626 -14.43558 -13.96701 -13.68079 -13.39987 -12.92085 -12.82444 -12.56606 -12.48574 -12.27574 -12.18291 -11.91171 -11.62035 -11.40219 -11.31012 -11.08360 -11.01146 -10.91075 -10.79460 -10.68618 -10.47996 -9.85856 -9.40538 -9.13546 -8.79661 -8.32753 -8.11038 -7.72629 -5.99091 -4.01638 1.36420 1.52464 3.08635 3.32008 3.38307 3.41511 3.78319 4.43325 4.51539 4.63455 4.68230 4.80015 4.86266 4.92543 5.09501 5.25265 5.25906 5.36638 5.40442 5.43769 5.47864 5.52911 5.61987 5.70752 5.77987 5.82203 5.86810 5.89048 5.94618 6.07889 6.25570 6.34095 6.43091 6.49451 6.53354 6.74794 6.82925 6.96178 7.42084 7.49153 7.54834 7.79032 7.90242 8.08906 8.43641 9.05674 9.61884 11.12241 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.003326 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.074349 B = 8417.374626 C = 8990.501785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.314 6.314 5 C 0.126 3.874 6 C -0.159 4.159 7 C -0.083 4.083 8 C -0.136 4.136 9 C -0.028 4.028 10 C 0.088 3.912 11 N -0.534 5.534 12 C 0.023 3.977 13 C 0.063 3.937 14 C 0.028 3.972 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.203 4.203 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 13.601 15.404 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.228 6.228 5 C 0.081 3.919 6 C -0.178 4.178 7 C -0.101 4.101 8 C -0.155 4.155 9 C -0.028 4.028 10 C -0.040 4.040 11 N -0.258 5.258 12 C -0.125 4.125 13 C -0.064 4.064 14 C -0.009 4.009 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.222 4.222 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.301 13.515 15.697 21.962 hybrid contribution -0.945 -0.321 -1.495 1.797 sum -8.246 13.194 14.202 21.066 Atomic orbital electron populations 1.22382 0.95181 1.03175 1.02985 1.22417 0.94266 0.93678 0.87689 1.21847 1.02209 0.93525 1.02902 1.86085 1.81386 1.16606 1.38728 1.18925 0.96007 0.82333 0.94610 1.20362 1.04836 0.93867 0.98768 1.20933 0.98086 0.93144 0.97928 1.20971 1.00632 1.00380 0.93506 1.19660 0.95627 0.92544 0.94996 1.21110 0.92513 0.99574 0.90801 1.62105 1.36768 1.11068 1.15866 1.22452 1.00282 0.90118 0.99626 1.22378 0.99751 0.93899 0.90351 1.19102 0.91954 0.96687 0.93194 1.21193 0.95494 1.28276 1.11158 0.92805 1.24997 0.94963 0.96452 0.97914 1.69977 1.01742 1.44817 1.36650 0.86594 0.77998 0.80942 0.82462 1.20732 1.21192 1.19884 1.21173 1.07469 0.94992 0.98548 0.91044 0.91771 0.91539 0.90766 0.91586 0.90540 0.91599 0.85717 0.85553 0.85695 0.89997 0.94695 0.92357 0.90247 0.96633 0.92033 0.96213 0.96456 0.95662 0.92997 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.17 37.16 0.34 -1.19 16 2 C 0.08 0.74 2.85 -26.73 -0.08 0.66 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.78 16 4 O -0.31 -3.84 9.80 -19.42 -0.19 -4.03 16 5 C 0.13 1.65 6.60 -39.21 -0.26 1.39 16 6 C -0.16 -1.95 9.99 -39.43 -0.39 -2.35 16 7 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 8 C -0.14 -1.82 9.70 -39.56 -0.38 -2.20 16 9 C -0.03 -0.39 4.88 -104.64 -0.51 -0.90 16 10 C 0.09 1.34 5.12 -4.97 -0.03 1.31 16 11 N -0.53 -9.92 4.75 -244.37 -1.16 -11.08 16 12 C 0.02 0.41 8.94 60.06 0.54 0.95 16 13 C 0.06 1.33 4.90 -3.82 -0.02 1.31 16 14 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 15 C -0.52 -14.86 9.11 -34.43 -0.31 -15.17 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.20 -2.69 6.16 -39.43 -0.24 -2.94 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.76 6.32 -51.93 -0.33 0.43 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 35 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.06 0.93 6.16 -51.93 -0.32 0.61 16 37 H 0.08 1.54 6.30 -51.93 -0.33 1.22 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 40 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.02 0.48 6.47 -51.93 -0.34 0.14 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 1.55 5.40 -52.48 -0.28 1.26 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -31.01 352.83 -9.33 -40.34 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.38 Total: -1.84 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.62 Total: -19.12 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.43 Total: -37.34 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.19 Total: -4.03 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.01 -9.33 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120705880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.416 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds