Wall clock time and date at job start Mon Mar 30 2020 02:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 N 1.46507 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99885 * 269.99885 * 4 3 2 6 6 H 1.07999 * 119.99944 * 326.22107 * 5 4 3 7 7 C 1.38813 * 119.99695 * 146.21590 * 5 4 3 8 8 N 1.31618 * 120.00138 * 337.68236 * 7 5 4 9 9 Si 1.86799 * 119.99788 * 157.68400 * 7 5 4 10 10 H 1.48500 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47096 * 120.00076 * 9 7 5 12 12 H 1.48504 * 109.46777 * 239.99876 * 9 7 5 13 13 C 1.46502 * 119.99961 * 89.99934 * 4 3 2 14 14 C 1.53001 * 109.47138 * 85.79331 * 13 4 3 15 15 C 1.52999 * 109.47029 * 179.97438 * 14 13 4 16 16 C 1.50697 * 109.46971 * 179.97438 * 15 14 13 17 17 C 1.38284 * 119.97849 * 270.02251 * 16 15 14 18 18 C 1.38241 * 120.11633 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.05372 * 359.68131 * 18 17 16 20 20 C 1.38710 * 119.94265 * 0.57614 * 19 18 17 21 21 O 1.35896 * 120.05755 * 179.71978 * 20 19 18 22 22 C 1.42903 * 117.00015 * 359.72639 * 21 20 19 23 23 C 1.38124 * 119.97027 * 90.00124 * 16 15 14 24 24 H 1.09003 * 109.47115 * 60.00072 * 1 2 3 25 25 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47054 * 300.00104 * 1 2 3 27 27 H 1.09000 * 109.47054 * 239.99896 * 2 1 3 28 28 H 1.09003 * 109.47115 * 119.99928 * 2 1 3 29 29 H 1.09000 * 109.47250 * 60.00016 * 3 2 1 30 30 H 1.09003 * 109.47076 * 299.99952 * 3 2 1 31 31 H 0.96997 * 120.00127 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46938 * 325.79572 * 13 4 3 33 33 H 1.08994 * 109.46802 * 205.79662 * 13 4 3 34 34 H 1.09002 * 109.46924 * 59.99848 * 14 13 4 35 35 H 1.09001 * 109.47004 * 300.00293 * 14 13 4 36 36 H 1.08996 * 109.46794 * 60.00396 * 15 14 13 37 37 H 1.08994 * 109.47054 * 300.00419 * 15 14 13 38 38 H 1.08004 * 119.94185 * 0.02562 * 17 16 15 39 39 H 1.08003 * 119.97701 * 179.97438 * 18 17 16 40 40 H 1.08000 * 120.03150 * 180.29104 * 19 18 17 41 41 H 1.08996 * 109.47265 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.46879 * 299.99940 * 22 21 20 43 43 H 1.09005 * 109.47047 * 59.99680 * 22 21 20 44 44 H 1.08008 * 120.02689 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.7873 1.9622 2.0416 7 6 5.4026 0.7738 1.2859 8 7 5.6915 -0.1959 0.4441 9 14 6.6241 1.2505 2.6163 10 1 6.0647 2.3621 3.4267 11 1 6.8833 0.0801 3.4926 12 1 7.8957 1.6888 1.9867 13 6 4.2371 1.4427 -1.2697 14 6 4.4002 2.8813 -1.7641 15 6 5.1652 2.8815 -3.0891 16 6 5.3253 4.2985 -3.5765 17 6 4.3640 4.8599 -4.3968 18 6 4.5083 6.1593 -4.8459 19 6 5.6108 6.9028 -4.4706 20 6 6.5792 6.3403 -3.6522 21 8 7.6673 7.0675 -3.2862 22 6 7.7526 8.4036 -3.7860 23 6 6.4321 5.0357 -3.2030 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5385 -0.6633 0.5148 32 1 3.6824 0.8651 -2.0091 33 1 5.2200 0.9954 -1.1221 34 1 4.9549 3.4590 -1.0246 35 1 3.4171 3.3285 -1.9116 36 1 4.6109 2.3039 -3.8287 37 1 6.1482 2.4345 -2.9412 38 1 3.4989 4.2821 -4.6872 39 1 3.7563 6.5954 -5.4869 40 1 5.7208 7.9195 -4.8179 41 1 8.6668 8.8708 -3.4197 42 1 7.7667 8.3836 -4.8757 43 1 6.8898 8.9752 -3.4441 44 1 7.1827 4.5969 -2.5623 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159503190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:24 Heat of formation + Delta-G solvation = -15.603281 kcal Electronic energy + Delta-G solvation = -21285.126358 eV Core-core repulsion = 18202.664502 eV Total energy + Delta-G solvation = -3082.461856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06552 -37.72637 -36.29549 -33.74962 -32.65769 -30.90359 -30.38647 -29.16564 -27.35731 -25.54811 -25.37062 -22.64799 -22.32635 -21.17588 -20.43376 -19.50348 -17.66359 -16.58272 -16.21652 -15.88310 -15.76641 -14.87177 -14.40815 -14.18572 -14.01568 -13.66568 -13.31578 -13.22323 -12.97649 -12.72859 -12.63072 -12.13514 -11.86948 -11.57945 -11.44634 -11.25509 -11.02050 -10.96032 -10.83581 -10.67673 -10.60574 -10.45788 -10.19296 -10.08778 -9.77331 -9.61794 -9.41888 -8.62007 -8.40684 -8.09897 -6.52828 -5.71952 -3.24154 1.45830 1.56753 3.25953 3.39837 3.48789 3.51575 3.88620 4.54498 4.79610 4.91766 5.00095 5.02197 5.19837 5.31430 5.38493 5.45807 5.47191 5.55973 5.66275 5.80113 5.85858 5.88191 6.07487 6.10995 6.24473 6.34012 6.36229 6.42099 6.47177 6.52653 6.59134 6.63511 6.72181 6.82799 6.85580 6.90462 7.00482 7.11959 7.31912 7.34299 7.45224 7.82247 7.89367 8.57847 9.26807 9.91048 10.47271 11.28620 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.004491 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.244522 B = 6232.504930 C = 7655.080154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.587 5.587 5 C -0.252 4.252 6 H 0.061 0.939 7 C 0.008 3.992 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.288 1.288 13 C 0.145 3.855 14 C -0.126 4.126 15 C -0.082 4.082 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.223 4.223 20 C 0.125 3.875 21 O -0.319 6.319 22 C 0.029 3.971 23 C -0.149 4.149 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.253 0.747 32 H 0.019 0.981 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 12.036 -10.896 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.306 5.306 5 C -0.382 4.382 6 H 0.078 0.922 7 C -0.191 4.191 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.019 3.981 14 C -0.166 4.166 15 C -0.120 4.120 16 C -0.026 4.026 17 C -0.175 4.175 18 C -0.100 4.100 19 C -0.241 4.241 20 C 0.080 3.920 21 O -0.232 6.232 22 C -0.066 4.066 23 C -0.168 4.168 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.954 11.883 -10.758 16.058 hybrid contribution 0.563 0.471 0.481 0.878 sum -0.391 12.354 -10.277 16.075 Atomic orbital electron populations 1.21761 0.97913 1.00219 1.00615 1.22099 0.92910 1.01081 1.01976 1.20911 0.85636 0.93271 0.97989 1.43899 0.99280 1.85020 1.02442 1.19123 1.02586 1.25900 0.90564 0.92164 1.25037 1.00636 0.95418 0.98054 1.69992 1.23326 1.20790 1.39140 0.86388 0.81705 0.78066 0.81655 1.20191 1.21788 1.21458 1.20966 1.00380 0.91230 0.85559 1.22193 0.98224 1.02329 0.93842 1.20689 1.02030 0.90700 0.98538 1.19945 0.92273 0.96652 0.93683 1.20981 0.99941 0.95742 1.00788 1.20860 0.96574 0.94123 0.98447 1.21106 0.97229 1.01000 1.04806 1.19021 0.86604 0.91614 0.94735 1.86082 1.41009 1.25991 1.70163 1.23003 1.02900 0.81538 0.99161 1.20394 1.00300 0.91988 1.04085 0.93718 0.93965 0.93478 0.93125 0.92009 0.94242 0.95020 0.93739 0.96269 0.88204 0.92252 0.93863 0.91289 0.90848 0.85993 0.86183 0.86029 0.88487 0.92897 0.92810 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -3.00 16 3 C 0.15 3.18 5.69 -4.04 -0.02 3.16 16 4 N -0.59 -14.64 2.45 -173.24 -0.43 -15.06 16 5 C -0.25 -6.91 9.49 -15.06 -0.14 -7.06 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 8 N -0.89 -25.46 11.32 55.49 0.63 -24.83 16 9 Si 0.89 21.78 29.61 -169.99 -5.03 16.75 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.15 3.37 5.25 -4.04 -0.02 3.34 16 14 C -0.13 -2.49 5.52 -26.73 -0.15 -2.64 16 15 C -0.08 -1.35 5.34 -27.88 -0.15 -1.50 16 16 C -0.03 -0.39 5.13 -104.65 -0.54 -0.93 16 17 C -0.16 -2.16 9.70 -39.56 -0.38 -2.54 16 18 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 19 C -0.22 -2.80 9.04 -39.43 -0.36 -3.15 16 20 C 0.13 1.82 6.69 -39.22 -0.26 1.56 16 21 O -0.32 -4.37 10.50 -19.41 -0.20 -4.57 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 C -0.15 -2.37 9.64 -39.43 -0.38 -2.75 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 30 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.10 2.63 5.32 -51.93 -0.28 2.35 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 43 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 44 H 0.13 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -29.92 360.51 -9.00 -38.92 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.70 Total: 0.86 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.69 Total: -17.50 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.20 Total: -39.89 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.92 -9.00 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159503190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.312 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds