Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 N 1.46507 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99885 * 269.99885 * 4 3 2 6 6 H 1.07999 * 119.99944 * 326.22107 * 5 4 3 7 7 C 1.38813 * 119.99695 * 146.21590 * 5 4 3 8 8 N 1.31618 * 120.00138 * 337.68236 * 7 5 4 9 9 Si 1.86799 * 119.99788 * 157.68400 * 7 5 4 10 10 H 1.48500 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47096 * 120.00076 * 9 7 5 12 12 H 1.48504 * 109.46777 * 239.99876 * 9 7 5 13 13 C 1.46502 * 119.99961 * 89.99934 * 4 3 2 14 14 C 1.53001 * 109.47138 * 85.79331 * 13 4 3 15 15 C 1.52999 * 109.47029 * 179.97438 * 14 13 4 16 16 C 1.50697 * 109.46971 * 179.97438 * 15 14 13 17 17 C 1.38284 * 119.97849 * 270.02251 * 16 15 14 18 18 C 1.38241 * 120.11633 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.05372 * 359.68131 * 18 17 16 20 20 C 1.38710 * 119.94265 * 0.57614 * 19 18 17 21 21 O 1.35896 * 120.05755 * 179.71978 * 20 19 18 22 22 C 1.42903 * 117.00015 * 359.72639 * 21 20 19 23 23 C 1.38124 * 119.97027 * 90.00124 * 16 15 14 24 24 H 1.09003 * 109.47115 * 60.00072 * 1 2 3 25 25 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47054 * 300.00104 * 1 2 3 27 27 H 1.09000 * 109.47054 * 239.99896 * 2 1 3 28 28 H 1.09003 * 109.47115 * 119.99928 * 2 1 3 29 29 H 1.09000 * 109.47250 * 60.00016 * 3 2 1 30 30 H 1.09003 * 109.47076 * 299.99952 * 3 2 1 31 31 H 0.96997 * 120.00127 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46938 * 325.79572 * 13 4 3 33 33 H 1.08994 * 109.46802 * 205.79662 * 13 4 3 34 34 H 1.09002 * 109.46924 * 59.99848 * 14 13 4 35 35 H 1.09001 * 109.47004 * 300.00293 * 14 13 4 36 36 H 1.08996 * 109.46794 * 60.00396 * 15 14 13 37 37 H 1.08994 * 109.47054 * 300.00419 * 15 14 13 38 38 H 1.08004 * 119.94185 * 0.02562 * 17 16 15 39 39 H 1.08003 * 119.97701 * 179.97438 * 18 17 16 40 40 H 1.08000 * 120.03150 * 180.29104 * 19 18 17 41 41 H 1.08996 * 109.47265 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.46879 * 299.99940 * 22 21 20 43 43 H 1.09005 * 109.47047 * 59.99680 * 22 21 20 44 44 H 1.08008 * 120.02689 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.7873 1.9622 2.0416 7 6 5.4026 0.7738 1.2859 8 7 5.6915 -0.1959 0.4441 9 14 6.6241 1.2505 2.6163 10 1 6.0647 2.3621 3.4267 11 1 6.8833 0.0801 3.4926 12 1 7.8957 1.6888 1.9867 13 6 4.2371 1.4427 -1.2697 14 6 4.4002 2.8813 -1.7641 15 6 5.1652 2.8815 -3.0891 16 6 5.3253 4.2985 -3.5765 17 6 4.3640 4.8599 -4.3968 18 6 4.5083 6.1593 -4.8459 19 6 5.6108 6.9028 -4.4706 20 6 6.5792 6.3403 -3.6522 21 8 7.6673 7.0675 -3.2862 22 6 7.7526 8.4036 -3.7860 23 6 6.4321 5.0357 -3.2030 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5385 -0.6633 0.5148 32 1 3.6824 0.8651 -2.0091 33 1 5.2200 0.9954 -1.1221 34 1 4.9549 3.4590 -1.0246 35 1 3.4171 3.3285 -1.9116 36 1 4.6109 2.3039 -3.8287 37 1 6.1482 2.4345 -2.9412 38 1 3.4989 4.2821 -4.6872 39 1 3.7563 6.5954 -5.4869 40 1 5.7208 7.9195 -4.8179 41 1 8.6668 8.8708 -3.4197 42 1 7.7667 8.3836 -4.8757 43 1 6.8898 8.9752 -3.4441 44 1 7.1827 4.5969 -2.5623 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159503190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = -30.081367 kcal Electronic energy + Delta-G solvation = -21285.754175 eV Core-core repulsion = 18202.664502 eV Total energy + Delta-G solvation = -3083.089673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07675 -38.85672 -38.03417 -35.16112 -34.43523 -32.56306 -31.54700 -30.55951 -28.17885 -27.30552 -26.93935 -24.21218 -23.44030 -22.73174 -21.69966 -21.26642 -18.82807 -18.43819 -17.24353 -16.94800 -16.80156 -16.63638 -16.02231 -15.85813 -15.38478 -14.96119 -14.83211 -14.55573 -14.28762 -14.15776 -13.81963 -13.55863 -13.16222 -12.94594 -12.80862 -12.74589 -12.57476 -12.47798 -12.39290 -12.11086 -11.96997 -11.95542 -11.83033 -11.72312 -11.52951 -11.35965 -11.21073 -10.49407 -9.74212 -9.13565 -8.56034 -7.80802 -5.36791 0.38505 0.51186 1.42282 1.46339 1.55350 2.38262 2.51351 2.81382 3.25461 3.69007 3.89035 3.91464 4.13952 4.23255 4.28432 4.32717 4.38904 4.44540 4.46368 4.55779 4.61685 4.64881 4.70478 4.75031 4.76534 4.84341 4.91360 4.99022 5.11300 5.13295 5.20537 5.27172 5.29115 5.36469 5.47192 5.50151 5.53573 5.62664 5.70400 5.76643 5.87874 5.94947 6.48664 6.49002 7.19817 7.92221 8.41514 9.15999 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.004491 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.244522 B = 6232.504930 C = 7655.080154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.604 5.604 5 C -0.261 4.261 6 H 0.054 0.946 7 C -0.037 4.037 8 N -0.916 5.916 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.148 3.852 14 C -0.106 4.106 15 C -0.072 4.072 16 C -0.041 4.041 17 C -0.162 4.162 18 C -0.076 4.076 19 C -0.217 4.217 20 C 0.114 3.886 21 O -0.344 6.344 22 C 0.019 3.981 23 C -0.178 4.178 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.250 0.750 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 14.123 -12.356 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.325 5.325 5 C -0.392 4.392 6 H 0.071 0.929 7 C -0.234 4.234 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.217 1.217 13 C 0.022 3.978 14 C -0.146 4.146 15 C -0.110 4.110 16 C -0.042 4.042 17 C -0.180 4.180 18 C -0.093 4.093 19 C -0.235 4.235 20 C 0.069 3.931 21 O -0.258 6.258 22 C -0.075 4.075 23 C -0.197 4.197 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.452 13.987 -12.222 18.736 hybrid contribution 1.010 -0.096 0.893 1.352 sum -1.441 13.891 -11.329 17.983 Atomic orbital electron populations 1.21659 0.94060 1.01666 1.02039 1.21940 0.96224 0.99436 0.99598 1.21048 0.83737 0.94285 0.98967 1.44150 1.00850 1.85308 1.02175 1.19305 1.03210 1.25334 0.91325 0.92867 1.25643 1.02009 0.95566 1.00141 1.70110 1.23472 1.21765 1.40732 0.85506 0.79522 0.77760 0.79523 1.19509 1.21644 1.21731 1.20871 0.98580 0.93113 0.85274 1.21883 0.98698 0.99327 0.94708 1.20523 1.00945 0.92285 0.97230 1.19830 0.93255 0.95867 0.95215 1.21221 0.99796 0.96761 1.00252 1.21288 0.96956 0.93307 0.97798 1.21484 0.96314 1.02338 1.03398 1.19148 0.87508 0.91302 0.95102 1.86051 1.40876 1.28080 1.70794 1.23342 1.04447 0.79443 1.00294 1.20416 1.00628 0.93427 1.05182 0.91761 0.92569 0.92543 0.94550 0.95344 0.94249 0.92842 0.94064 0.95763 0.91443 0.95086 0.92880 0.89588 0.92306 0.84359 0.82574 0.82936 0.86632 0.91308 0.91667 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.29 16 2 C -0.13 -5.28 6.26 30.59 0.19 -5.09 16 3 C 0.15 6.16 5.69 86.38 0.49 6.65 16 4 N -0.60 -30.73 2.45 -701.99 -1.72 -32.45 16 5 C -0.26 -14.70 9.49 84.03 0.80 -13.90 16 6 H 0.05 3.01 7.92 -2.91 -0.02 2.99 16 7 C -0.04 -2.08 4.93 84.86 0.42 -1.66 16 8 N -0.92 -54.27 11.32 21.65 0.25 -54.03 16 9 Si 0.95 45.97 29.61 68.60 2.03 48.00 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 13 C 0.15 7.04 5.25 86.38 0.45 7.49 16 14 C -0.11 -4.29 5.52 30.59 0.17 -4.12 16 15 C -0.07 -2.43 5.34 29.85 0.16 -2.27 16 16 C -0.04 -1.29 5.13 -19.88 -0.10 -1.39 16 17 C -0.16 -4.12 9.70 22.28 0.22 -3.91 16 18 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 19 C -0.22 -4.82 9.04 22.37 0.20 -4.61 16 20 C 0.11 3.25 6.69 22.51 0.15 3.40 16 21 O -0.34 -9.19 10.50 -92.38 -0.97 -10.16 16 22 C 0.02 0.29 9.81 113.37 1.11 1.40 16 23 C -0.18 -5.82 9.64 22.37 0.22 -5.60 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 30 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.02 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.07 3.72 5.32 -2.39 -0.01 3.70 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 37 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 38 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 41 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 43 H 0.06 0.85 7.65 -2.38 -0.02 0.83 16 44 H 0.11 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -66.75 360.51 5.93 -60.82 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.94 Total: 16.11 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 5.41 Total: -28.29 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.48 Total: -86.48 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.97 Total: -10.16 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -66.75 5.93 -60.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159503190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.736 kcal (2) G-P(sol) polarization free energy of solvation -66.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds