Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 H 1.09001 * 109.47224 * 178.36073 * 3 2 1 5 5 N 1.46904 * 109.46860 * 58.36330 * 3 2 1 6 6 C 1.46901 * 111.00047 * 81.64957 * 5 3 2 7 7 C 1.52998 * 109.47098 * 176.28666 * 6 5 3 8 8 C 1.52998 * 109.47036 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46994 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00229 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99841 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99885 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47240 * 90.00373 * 13 11 9 15 15 H 1.48499 * 109.47451 * 210.00146 * 13 11 9 16 16 H 1.48499 * 109.47208 * 330.00608 * 13 11 9 17 17 C 1.50699 * 109.47028 * 298.36425 * 3 2 1 18 18 C 1.38163 * 120.02972 * 99.98144 * 17 3 2 19 19 C 1.38238 * 120.05615 * 180.02562 * 18 17 3 20 20 C 1.38287 * 120.11292 * 0.02562 * 19 18 17 21 21 C 1.38124 * 120.05599 * 359.95964 * 20 19 18 22 22 C 1.38713 * 120.02834 * 279.99518 * 17 3 2 23 23 O 1.35901 * 120.05361 * 359.70639 * 22 17 3 24 24 C 1.42896 * 116.99897 * 179.97438 * 23 22 17 25 25 H 1.09002 * 109.46742 * 305.60851 * 1 2 3 26 26 H 1.08998 * 109.46833 * 65.60627 * 1 2 3 27 27 H 1.08996 * 109.47238 * 185.61207 * 1 2 3 28 28 H 1.09002 * 109.46802 * 240.00109 * 2 1 3 29 29 H 1.09002 * 109.47313 * 120.00575 * 2 1 3 30 30 H 1.00902 * 110.99803 * 205.60226 * 5 3 2 31 31 H 1.08999 * 109.47498 * 296.28976 * 6 5 3 32 32 H 1.09007 * 109.46666 * 56.28899 * 6 5 3 33 33 H 1.09006 * 109.47289 * 300.00092 * 7 6 5 34 34 H 1.09001 * 109.46787 * 60.00375 * 7 6 5 35 35 H 1.09006 * 109.46927 * 300.00032 * 8 7 6 36 36 H 1.08994 * 109.47145 * 60.00019 * 8 7 6 37 37 H 0.97008 * 119.99841 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.97243 * 359.97438 * 18 17 3 39 39 H 1.08010 * 119.94268 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.97265 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.02698 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47640 * 59.99865 * 24 23 22 43 43 H 1.09001 * 109.47354 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47120 * 299.99899 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4425 0.0294 5 7 1.5184 2.1463 1.1792 6 6 2.3251 1.8479 2.3701 7 6 1.8094 2.6682 3.5541 8 6 2.6500 2.3579 4.7942 9 6 2.1416 3.1654 5.9606 10 1 1.3025 3.8328 5.8306 11 6 2.7470 3.0514 7.1941 12 7 3.7684 2.2383 7.3526 13 14 2.1172 4.0528 8.6398 14 1 1.0715 3.2812 9.3584 15 1 3.2405 4.3456 9.5659 16 1 1.5389 5.3277 8.1443 17 6 1.5712 2.1411 -1.2502 18 6 0.4748 2.9805 -1.2034 19 6 0.0439 3.6213 -2.3500 20 6 0.7082 3.4235 -3.5466 21 6 1.8050 2.5855 -3.5987 22 6 2.2397 1.9416 -2.4491 23 8 3.3218 1.1208 -2.4966 24 6 3.9604 0.9620 -3.7651 25 1 -0.3633 0.5984 0.8355 26 1 -0.3633 0.4244 -0.9359 27 1 -0.3633 -1.0227 0.1005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.4703 3.1406 1.0149 31 1 2.2496 0.7859 2.6034 32 1 3.3668 2.1043 2.1767 33 1 1.8849 3.7303 3.3208 34 1 0.7677 2.4118 3.7474 35 1 2.5748 1.2958 5.0277 36 1 3.6915 2.6145 4.6006 37 1 4.1946 2.1583 8.2204 38 1 -0.0465 3.1357 -0.2703 39 1 -0.8136 4.2768 -2.3114 40 1 0.3693 3.9249 -4.4412 41 1 2.3237 2.4317 -4.5334 42 1 4.3122 1.9311 -4.1187 43 1 4.8069 0.2828 -3.6633 44 1 3.2489 0.5504 -4.4810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178648799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = -31.614712 kcal Electronic energy + Delta-G solvation = -21377.386058 eV Core-core repulsion = 18294.229894 eV Total energy + Delta-G solvation = -3083.156164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53337 -37.99984 -36.73261 -34.22419 -32.47969 -30.91289 -30.26406 -30.16703 -27.52426 -26.50354 -25.04836 -22.99489 -22.27446 -21.80195 -20.10670 -19.70760 -18.11897 -16.44489 -16.31996 -16.06025 -15.95617 -15.20961 -14.62487 -14.49318 -14.44622 -14.20140 -13.83879 -13.52952 -13.12758 -12.70480 -12.57530 -12.24031 -12.17807 -11.72644 -11.66286 -11.60426 -11.30997 -11.14952 -11.05900 -10.77313 -10.75075 -10.55256 -10.41319 -10.34575 -9.63633 -9.29090 -9.01687 -8.91598 -8.29974 -8.27659 -8.06754 -5.95164 -3.97037 1.21752 1.33049 3.11537 3.35352 3.41225 3.44910 3.65088 4.35683 4.51475 4.59556 4.75567 4.84319 4.89343 4.96471 5.11341 5.22923 5.28369 5.34664 5.40596 5.44988 5.60453 5.63218 5.81917 5.88940 5.91701 5.99786 6.15814 6.18754 6.21742 6.30942 6.36749 6.43221 6.46728 6.64532 6.68617 6.78929 6.88754 7.19436 7.23841 7.44117 7.70469 7.74267 7.89770 8.05790 8.49011 9.10309 9.66669 11.16303 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.003143 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.116491 B = 8907.862222 C = 9202.896455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.134 3.866 4 H 0.052 0.948 5 N -0.683 5.683 6 C 0.059 3.941 7 C -0.107 4.107 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.107 4.107 18 C -0.069 4.069 19 C -0.157 4.157 20 C -0.088 4.088 21 C -0.211 4.211 22 C 0.128 3.872 23 O -0.312 6.312 24 C 0.028 3.972 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.338 0.662 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -1.505 -25.168 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C 0.024 3.976 4 H 0.070 0.930 5 N -0.315 5.315 6 C -0.069 4.069 7 C -0.145 4.145 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.108 4.108 18 C -0.087 4.087 19 C -0.176 4.176 20 C -0.106 4.106 21 C -0.230 4.230 22 C 0.082 3.918 23 O -0.225 6.225 24 C -0.067 4.067 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.055 -2.165 -24.740 25.164 hybrid contribution 0.631 1.092 0.274 1.291 sum -3.424 -1.073 -24.467 24.728 Atomic orbital electron populations 1.21659 0.95366 1.00627 1.02276 1.21412 0.96926 0.94432 1.01292 1.20246 0.96850 0.93930 0.86576 0.92995 1.60723 1.54438 1.13487 1.02885 1.22164 0.93884 1.01025 0.89825 1.21627 1.00620 0.97632 0.94608 1.19060 0.94729 0.96973 0.90792 1.21267 1.15458 1.24464 0.94421 0.92692 1.25033 0.95061 0.95580 0.98891 1.69973 1.22349 1.37464 1.23841 0.86602 0.78377 0.80581 0.82485 1.20677 1.21296 1.19893 1.19359 0.97310 1.00930 0.93195 1.21042 0.94459 0.94079 0.99122 1.21093 1.01438 1.02199 0.92842 1.20901 0.94717 0.97053 0.97978 1.21149 1.01266 1.03089 0.97487 1.18847 0.87634 0.91444 0.93830 1.86115 1.40956 1.62373 1.33076 1.23035 0.97412 1.01811 0.84486 0.90783 0.93671 0.94045 0.92355 0.91796 0.84370 0.91363 0.95775 0.93751 0.92552 0.96580 0.96841 0.93080 0.84023 0.85946 0.86160 0.85777 0.92826 0.88297 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.30 37.16 0.35 -1.47 16 2 C -0.10 -1.37 5.72 -26.73 -0.15 -1.52 16 3 C 0.13 1.86 2.18 -68.86 -0.15 1.70 16 4 H 0.05 0.79 7.51 -51.93 -0.39 0.40 16 5 N -0.68 -10.17 4.61 -107.95 -0.50 -10.67 16 6 C 0.06 1.06 5.51 -3.82 -0.02 1.04 16 7 C -0.11 -2.25 5.38 -26.73 -0.14 -2.39 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 13 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.11 -1.36 4.17 -104.47 -0.44 -1.79 16 18 C -0.07 -0.80 8.10 -39.61 -0.32 -1.12 16 19 C -0.16 -1.59 10.04 -39.56 -0.40 -1.99 16 20 C -0.09 -0.84 10.04 -39.61 -0.40 -1.24 16 21 C -0.21 -2.13 9.04 -39.44 -0.36 -2.48 16 22 C 0.13 1.53 6.66 -39.22 -0.26 1.27 16 23 O -0.31 -3.61 9.65 -19.43 -0.19 -3.80 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 H 0.07 1.03 7.38 -51.93 -0.38 0.65 16 26 H 0.04 0.56 7.04 -51.93 -0.37 0.19 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 30 H 0.34 4.82 7.14 -39.29 -0.28 4.54 16 31 H 0.07 1.25 7.36 -51.93 -0.38 0.86 16 32 H 0.02 0.44 7.98 -51.92 -0.41 0.03 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.14 1.62 6.77 -52.48 -0.36 1.27 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.97 6.30 -52.49 -0.33 0.64 16 42 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -31.31 353.13 -8.92 -40.22 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.42 Total: 0.77 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.85 Total: -22.12 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.24 Total: -37.40 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.19 Total: -3.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.31 -8.92 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178648799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.610 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds