Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 H 1.09001 * 109.47224 * 178.36073 * 3 2 1 5 5 N 1.46904 * 109.46860 * 58.36330 * 3 2 1 6 6 C 1.46901 * 111.00047 * 81.64957 * 5 3 2 7 7 C 1.52998 * 109.47098 * 176.28666 * 6 5 3 8 8 C 1.52998 * 109.47036 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46994 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00229 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99841 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99885 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47240 * 90.00373 * 13 11 9 15 15 H 1.48499 * 109.47451 * 210.00146 * 13 11 9 16 16 H 1.48499 * 109.47208 * 330.00608 * 13 11 9 17 17 C 1.50699 * 109.47028 * 298.36425 * 3 2 1 18 18 C 1.38163 * 120.02972 * 99.98144 * 17 3 2 19 19 C 1.38238 * 120.05615 * 180.02562 * 18 17 3 20 20 C 1.38287 * 120.11292 * 0.02562 * 19 18 17 21 21 C 1.38124 * 120.05599 * 359.95964 * 20 19 18 22 22 C 1.38713 * 120.02834 * 279.99518 * 17 3 2 23 23 O 1.35901 * 120.05361 * 359.70639 * 22 17 3 24 24 C 1.42896 * 116.99897 * 179.97438 * 23 22 17 25 25 H 1.09002 * 109.46742 * 305.60851 * 1 2 3 26 26 H 1.08998 * 109.46833 * 65.60627 * 1 2 3 27 27 H 1.08996 * 109.47238 * 185.61207 * 1 2 3 28 28 H 1.09002 * 109.46802 * 240.00109 * 2 1 3 29 29 H 1.09002 * 109.47313 * 120.00575 * 2 1 3 30 30 H 1.00902 * 110.99803 * 205.60226 * 5 3 2 31 31 H 1.08999 * 109.47498 * 296.28976 * 6 5 3 32 32 H 1.09007 * 109.46666 * 56.28899 * 6 5 3 33 33 H 1.09006 * 109.47289 * 300.00092 * 7 6 5 34 34 H 1.09001 * 109.46787 * 60.00375 * 7 6 5 35 35 H 1.09006 * 109.46927 * 300.00032 * 8 7 6 36 36 H 1.08994 * 109.47145 * 60.00019 * 8 7 6 37 37 H 0.97008 * 119.99841 * 179.97438 * 12 11 9 38 38 H 1.08004 * 119.97243 * 359.97438 * 18 17 3 39 39 H 1.08010 * 119.94268 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.97265 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.02698 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47640 * 59.99865 * 24 23 22 43 43 H 1.09001 * 109.47354 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47120 * 299.99899 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4425 0.0294 5 7 1.5184 2.1463 1.1792 6 6 2.3251 1.8479 2.3701 7 6 1.8094 2.6682 3.5541 8 6 2.6500 2.3579 4.7942 9 6 2.1416 3.1654 5.9606 10 1 1.3025 3.8328 5.8306 11 6 2.7470 3.0514 7.1941 12 7 3.7684 2.2383 7.3526 13 14 2.1172 4.0528 8.6398 14 1 1.0715 3.2812 9.3584 15 1 3.2405 4.3456 9.5659 16 1 1.5389 5.3277 8.1443 17 6 1.5712 2.1411 -1.2502 18 6 0.4748 2.9805 -1.2034 19 6 0.0439 3.6213 -2.3500 20 6 0.7082 3.4235 -3.5466 21 6 1.8050 2.5855 -3.5987 22 6 2.2397 1.9416 -2.4491 23 8 3.3218 1.1208 -2.4966 24 6 3.9604 0.9620 -3.7651 25 1 -0.3633 0.5984 0.8355 26 1 -0.3633 0.4244 -0.9359 27 1 -0.3633 -1.0227 0.1005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.4703 3.1406 1.0149 31 1 2.2496 0.7859 2.6034 32 1 3.3668 2.1043 2.1767 33 1 1.8849 3.7303 3.3208 34 1 0.7677 2.4118 3.7474 35 1 2.5748 1.2958 5.0277 36 1 3.6915 2.6145 4.6006 37 1 4.1946 2.1583 8.2204 38 1 -0.0465 3.1357 -0.2703 39 1 -0.8136 4.2768 -2.3114 40 1 0.3693 3.9249 -4.4412 41 1 2.3237 2.4317 -4.5334 42 1 4.3122 1.9311 -4.1187 43 1 4.8069 0.2828 -3.6633 44 1 3.2489 0.5504 -4.4810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178648799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = -49.207954 kcal Electronic energy + Delta-G solvation = -21378.148958 eV Core-core repulsion = 18294.229894 eV Total energy + Delta-G solvation = -3083.919064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36021 -38.96246 -37.76676 -35.99153 -34.29173 -32.10088 -31.58446 -30.99513 -28.42201 -27.91249 -26.40159 -24.51224 -23.33825 -22.76772 -21.86739 -20.77722 -18.94315 -18.45042 -17.34945 -17.14532 -16.73173 -16.52809 -16.30043 -15.51573 -15.41828 -15.34020 -15.25415 -14.49854 -14.33626 -14.21355 -13.73159 -13.48687 -13.39599 -13.29486 -12.89700 -12.76839 -12.47803 -12.46378 -12.34170 -12.16998 -12.01128 -11.93415 -11.78745 -11.55153 -11.43653 -11.30129 -11.05200 -10.54740 -9.75546 -9.39621 -9.04973 -8.19330 -6.30505 0.40739 0.53043 1.40452 1.42287 1.53426 2.41721 2.42589 2.84509 3.13700 3.16628 3.69825 3.99867 4.12708 4.15522 4.26112 4.28637 4.33350 4.39416 4.44932 4.47803 4.55409 4.60295 4.72389 4.72986 4.75487 4.86902 4.98703 5.03594 5.06812 5.13713 5.20294 5.26609 5.32802 5.39301 5.49932 5.54033 5.59958 5.64326 5.76102 5.86596 5.91802 6.11098 6.27875 6.43554 6.52677 6.86561 7.38699 8.92759 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.003143 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.116491 B = 8907.862222 C = 9202.896455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C 0.140 3.860 4 H 0.033 0.967 5 N -0.674 5.674 6 C 0.074 3.926 7 C -0.090 4.090 8 C 0.025 3.975 9 C -0.542 4.542 10 H 0.061 0.939 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.262 1.262 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.161 4.161 20 C -0.085 4.085 21 C -0.212 4.212 22 C 0.114 3.886 23 O -0.336 6.336 24 C 0.020 3.980 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.343 0.657 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.057 0.943 35 H -0.009 1.009 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 -0.347 -26.709 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C 0.030 3.970 4 H 0.051 0.949 5 N -0.306 5.306 6 C -0.055 4.055 7 C -0.128 4.128 8 C -0.012 4.012 9 C -0.580 4.580 10 H 0.079 0.921 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.129 4.129 18 C -0.096 4.096 19 C -0.179 4.179 20 C -0.103 4.103 21 C -0.231 4.231 22 C 0.069 3.931 23 O -0.250 6.250 24 C -0.075 4.075 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.322 -1.005 -26.306 26.858 hybrid contribution 1.064 0.707 0.657 1.437 sum -4.258 -0.298 -25.649 26.002 Atomic orbital electron populations 1.21563 0.94633 1.00934 1.01897 1.21384 0.97475 0.94132 1.00853 1.20136 0.95717 0.94283 0.86856 0.94876 1.60652 1.53420 1.14051 1.02440 1.21854 0.93658 0.99935 0.90072 1.21365 0.99512 0.98454 0.93492 1.18965 0.94221 0.95110 0.92935 1.21706 1.15829 1.24936 0.95539 0.92092 1.26019 0.95127 0.96701 1.02189 1.70110 1.23628 1.38960 1.24834 0.85420 0.77942 0.79159 0.78366 1.19717 1.20743 1.18628 1.19284 0.98563 1.02201 0.92872 1.21078 0.94362 0.94405 0.99761 1.21369 1.01999 1.02022 0.92523 1.21292 0.93958 0.96296 0.98782 1.21454 1.01429 1.02477 0.97725 1.19022 0.87925 0.91968 0.94206 1.86081 1.41086 1.62434 1.35409 1.23297 0.97968 1.02864 0.83347 0.92092 0.93190 0.93168 0.91865 0.93087 0.83756 0.92046 0.96572 0.93103 0.92467 0.99107 0.99342 0.92795 0.84439 0.83938 0.83253 0.83494 0.91823 0.87015 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.30 71.98 0.67 -2.67 16 2 C -0.10 -2.71 5.72 30.59 0.17 -2.54 16 3 C 0.14 3.94 2.18 44.17 0.10 4.04 16 4 H 0.03 1.06 7.51 -2.39 -0.02 1.04 16 5 N -0.67 -20.28 4.61 -495.44 -2.28 -22.56 16 6 C 0.07 2.71 5.51 86.30 0.48 3.18 16 7 C -0.09 -3.86 5.38 30.59 0.16 -3.70 16 8 C 0.03 1.39 4.97 29.85 0.15 1.54 16 9 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 10 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 11 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 12 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 13 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 C -0.13 -3.19 4.17 -19.77 -0.08 -3.28 16 18 C -0.08 -1.73 8.10 22.25 0.18 -1.54 16 19 C -0.16 -2.88 10.04 22.28 0.22 -2.66 16 20 C -0.09 -1.36 10.04 22.25 0.22 -1.14 16 21 C -0.21 -3.77 9.04 22.36 0.20 -3.56 16 22 C 0.11 2.62 6.66 22.51 0.15 2.77 16 23 O -0.34 -7.58 9.65 -92.43 -0.89 -8.48 16 24 C 0.02 0.26 9.81 113.37 1.11 1.37 16 25 H 0.06 1.69 7.38 -2.39 -0.02 1.67 16 26 H 0.05 1.20 7.04 -2.39 -0.02 1.18 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.63 8.06 -2.39 -0.02 1.61 16 29 H 0.05 1.48 7.37 -2.39 -0.02 1.46 16 30 H 0.34 9.77 7.14 -89.69 -0.64 9.13 16 31 H 0.06 2.33 7.36 -2.39 -0.02 2.32 16 32 H 0.02 0.61 7.98 -2.38 -0.02 0.59 16 33 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.14 3.06 6.77 -2.91 -0.02 3.04 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 42 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 43 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 Total: -1.00 -67.89 353.13 3.89 -64.00 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.32 Total: 17.34 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 4.43 Total: -39.43 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.00 Total: -80.59 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.89 Total: -8.48 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.89 3.89 -64.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178648799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.787 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds