Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 H 1.08995 * 109.46875 * 304.99616 * 3 2 1 5 5 C 1.53006 * 109.46924 * 184.99573 * 3 2 1 6 6 N 1.46900 * 109.47196 * 64.99730 * 3 2 1 7 7 C 1.46896 * 111.00195 * 204.99701 * 6 3 2 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 3 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47326 * 300.00091 * 1 2 3 27 27 H 1.08997 * 109.46668 * 60.00256 * 1 2 3 28 28 H 1.08994 * 109.47326 * 239.99909 * 2 1 3 29 29 H 1.09005 * 109.46815 * 120.00088 * 2 1 3 30 30 H 1.08996 * 109.46750 * 179.97438 * 5 3 2 31 31 H 1.08989 * 109.47362 * 300.00183 * 5 3 2 32 32 H 1.09002 * 109.46729 * 59.99924 * 5 3 2 33 33 H 1.00903 * 110.99490 * 81.04402 * 6 3 2 34 34 H 1.09005 * 109.46944 * 59.99947 * 7 6 3 35 35 H 1.09002 * 109.47398 * 300.00389 * 7 6 3 36 36 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 37 37 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 40 40 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.02419 * 359.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5649 1.4443 -0.1256 6 7 1.6513 2.0993 1.2552 7 6 1.5725 3.5562 1.0846 8 6 1.1715 4.1939 2.3898 9 6 -0.1661 4.3874 2.6819 10 6 -0.5371 4.9727 3.8782 11 6 0.4280 5.3596 4.7879 12 6 1.7707 5.1713 4.4950 13 8 2.7221 5.5562 5.3858 14 6 2.2685 6.1539 6.6019 15 6 3.4733 6.5178 7.4719 16 6 2.9949 7.1474 8.7547 17 1 1.9372 7.2749 8.9320 18 6 3.9073 7.5598 9.7025 19 7 5.1953 7.4041 9.4867 20 14 3.3143 8.3410 11.2923 21 1 2.4478 7.3810 12.0223 22 1 4.4836 8.6929 12.1372 23 1 2.5399 9.5693 10.9815 24 6 2.1405 4.5841 3.2936 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 3.9281 2.4720 -0.1261 31 1 3.9995 0.9054 0.7161 32 1 3.8533 0.9570 -1.0570 33 1 2.2852 1.8564 2.0017 34 1 0.8307 3.7931 0.3219 35 1 2.5454 3.9391 0.7765 36 1 -0.9224 4.0810 1.9743 37 1 -1.5826 5.1232 4.1039 38 1 0.1375 5.8124 5.7244 39 1 1.6992 7.0550 6.3737 40 1 1.6332 5.4489 7.1383 41 1 4.0422 5.6164 7.7000 42 1 4.1089 7.2225 6.9358 43 1 5.8373 7.6939 10.1537 44 1 3.1851 4.4319 3.0653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237001481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = -41.842886 kcal Electronic energy + Delta-G solvation = -20597.079575 eV Core-core repulsion = 17513.479884 eV Total energy + Delta-G solvation = -3083.599691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82681 -38.15275 -36.93598 -33.49938 -33.25326 -30.97593 -30.67745 -29.33827 -28.89041 -25.53039 -24.76391 -23.57872 -22.25859 -21.67461 -20.86139 -20.10191 -17.62970 -16.27813 -15.94964 -15.78238 -15.59789 -15.28837 -15.07215 -14.69587 -14.46657 -13.95067 -13.71247 -13.48500 -13.08893 -12.94993 -12.65411 -12.48517 -12.31899 -12.04951 -11.92774 -11.43374 -11.35956 -11.32660 -11.26730 -10.99556 -10.91634 -10.84308 -10.70031 -10.43334 -9.85236 -9.66319 -9.31867 -8.80419 -8.49894 -8.44962 -7.82089 -6.10840 -4.15599 1.45457 1.71623 3.28363 3.32694 3.34469 3.76737 3.86829 4.24531 4.40748 4.52496 4.76242 4.85257 4.94434 5.01727 5.16381 5.20319 5.25464 5.31752 5.33040 5.40905 5.48148 5.52635 5.55402 5.67658 5.73837 5.82010 5.83712 5.89060 5.99837 6.03514 6.07110 6.19882 6.22962 6.56490 6.57222 6.72464 6.73941 6.83465 7.01246 7.20518 7.50066 7.63354 7.81055 8.06574 8.23361 8.89768 9.48679 11.00724 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.002683 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.996202 B =10434.336738 C =10940.235454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.081 3.919 4 H 0.076 0.924 5 C -0.185 4.185 6 N -0.677 5.677 7 C 0.102 3.898 8 C -0.051 4.051 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.211 4.211 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.157 4.157 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.345 0.655 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.264 0.736 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 -11.263 -19.682 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.029 4.029 4 H 0.094 0.906 5 C -0.244 4.244 6 N -0.308 5.308 7 C -0.026 4.026 8 C -0.051 4.051 9 C -0.168 4.168 10 C -0.100 4.100 11 C -0.230 4.230 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.009 4.009 15 C -0.011 4.011 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.176 4.176 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.965 -11.337 -19.705 24.438 hybrid contribution 0.544 0.785 1.046 1.417 sum -8.421 -10.552 -18.659 23.031 Atomic orbital electron populations 1.21663 0.95369 1.00738 1.02423 1.21500 0.96700 0.95218 1.01462 1.21638 0.93055 0.95652 0.92538 0.90580 1.22530 0.97381 1.02046 1.02464 1.60626 1.56291 1.07105 1.06780 1.20856 0.99996 0.87367 0.94390 1.19402 0.93078 0.97583 0.95049 1.20752 0.95173 1.02988 0.97877 1.20898 0.98806 0.96837 0.93437 1.21389 0.92393 1.07201 1.01990 1.19146 0.88179 0.92908 0.89995 1.86166 1.33455 1.74212 1.29178 1.23321 1.01030 0.95204 0.81295 1.19116 0.91670 0.97669 0.92693 1.20934 0.93168 1.40834 1.01592 0.92415 1.24993 0.94814 0.95735 0.98648 1.69969 1.00723 1.46754 1.35352 0.86539 0.78204 0.79758 0.82830 1.20078 1.21109 1.20081 1.20269 0.99726 1.04543 0.93055 0.93646 0.91236 0.93535 0.92221 0.91967 0.92619 0.92245 0.92119 0.83651 0.90275 0.94304 0.86407 0.86212 0.85313 0.93158 0.93139 0.95424 0.95436 0.92643 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.80 37.16 0.36 -0.77 16 2 C -0.11 -0.83 5.61 -26.73 -0.15 -0.98 16 3 C 0.08 0.63 2.59 -67.71 -0.18 0.46 16 4 H 0.08 0.59 7.80 -51.93 -0.41 0.18 16 5 C -0.19 -1.36 9.16 37.16 0.34 -1.02 16 6 N -0.68 -6.36 5.69 -107.99 -0.61 -6.97 16 7 C 0.10 1.02 5.61 -4.98 -0.03 0.99 16 8 C -0.05 -0.64 5.39 -104.65 -0.56 -1.20 16 9 C -0.15 -1.86 9.70 -39.56 -0.38 -2.24 16 10 C -0.08 -1.09 10.04 -39.61 -0.40 -1.48 16 11 C -0.21 -3.34 9.04 -39.44 -0.36 -3.70 16 12 C 0.14 2.54 6.69 -39.22 -0.26 2.28 16 13 O -0.32 -6.60 10.14 -19.43 -0.20 -6.79 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 16 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.16 -2.36 9.64 -39.43 -0.38 -2.74 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.43 7.45 -51.93 -0.39 0.04 16 31 H 0.06 0.45 8.13 -51.94 -0.42 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 3.42 8.46 -39.29 -0.33 3.09 16 34 H 0.08 0.72 8.00 -51.93 -0.42 0.31 16 35 H 0.04 0.38 7.38 -51.93 -0.38 -0.01 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 39 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 40 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -29.58 361.64 -9.67 -39.24 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.64 Total: 0.32 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.38 Total: -21.72 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.12 Total: -32.79 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.20 Total: -6.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.58 -9.67 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237001481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.598 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds