Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99868 * 2 1 4 4 C 1.38729 * 120.05166 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94470 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05419 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94570 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47161 * 90.00519 * 7 6 5 9 9 C 1.52992 * 109.47448 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46862 * 305.00378 * 9 8 7 11 11 C 1.52997 * 109.47482 * 184.99813 * 9 8 7 12 12 N 1.46906 * 109.47164 * 64.99347 * 9 8 7 13 13 C 1.46897 * 111.00172 * 205.00386 * 12 9 8 14 14 C 1.52998 * 109.47146 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00064 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99708 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00005 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47406 * 89.99760 * 19 17 15 21 21 H 1.48499 * 109.47231 * 209.99603 * 19 17 15 22 22 H 1.48501 * 109.47195 * 329.99884 * 19 17 15 23 23 C 1.38274 * 120.11011 * 0.25904 * 6 5 4 24 24 C 1.38149 * 120.05611 * 359.44368 * 23 6 5 25 25 H 1.08994 * 109.47406 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47523 * 300.00434 * 1 2 3 27 27 H 1.09005 * 109.46857 * 60.00129 * 1 2 3 28 28 H 1.08005 * 120.03035 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97244 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46835 * 330.00397 * 7 6 5 31 31 H 1.09007 * 109.46907 * 210.00218 * 7 6 5 32 32 H 1.09001 * 109.47166 * 59.99426 * 8 7 6 33 33 H 1.09004 * 109.46717 * 300.00378 * 8 7 6 34 34 H 1.09002 * 109.47153 * 59.99783 * 11 9 8 35 35 H 1.09001 * 109.46832 * 299.99974 * 11 9 8 36 36 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 37 37 H 1.00899 * 110.99467 * 81.04922 * 12 9 8 38 38 H 1.09005 * 109.47066 * 299.99968 * 13 12 9 39 39 H 1.09001 * 109.47085 * 59.99954 * 13 12 9 40 40 H 1.08995 * 109.47099 * 300.00333 * 14 13 12 41 41 H 1.09010 * 109.47207 * 59.99644 * 14 13 12 42 42 H 0.97007 * 119.99778 * 180.02562 * 18 17 15 43 43 H 1.08006 * 119.96996 * 179.70602 * 23 6 5 44 44 H 1.07997 * 120.02573 * 180.25602 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2181 5.4739 -1.4393 9 6 4.9133 6.8368 -1.4382 10 1 4.3284 7.5425 -0.8482 11 6 5.0333 7.3494 -2.8747 12 7 6.2539 6.7023 -0.8527 13 6 6.7139 7.9796 -0.2916 14 6 8.1105 7.8002 0.3069 15 6 8.5828 9.1107 0.8820 16 1 7.9499 9.9840 0.8264 17 6 9.8223 9.1944 1.4799 18 7 10.2342 10.3379 1.9821 19 14 10.9166 7.6836 1.5765 20 1 11.7787 7.6186 0.3691 21 1 11.7692 7.7667 2.7895 22 1 10.0719 6.4643 1.6478 23 6 1.9211 3.6047 0.0070 24 6 1.2915 2.3751 0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.0209 0.3798 0.0005 29 1 5.1346 2.5749 0.0019 30 1 4.9440 4.9377 0.5168 31 1 3.3580 5.7459 0.5170 32 1 3.2604 5.5545 -1.9534 33 1 4.8463 4.7465 -1.9535 34 1 4.0386 7.4492 -3.3092 35 1 5.6182 6.6437 -3.4646 36 1 5.5281 8.3206 -2.8739 37 1 6.9109 6.3479 -1.5314 38 1 6.7510 8.7307 -1.0807 39 1 6.0235 8.3042 0.4869 40 1 8.0739 7.0490 1.0958 41 1 8.8007 7.4757 -0.4719 42 1 11.1065 10.3969 2.4024 43 1 1.3343 4.5114 0.0122 44 1 0.2129 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273202842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -55.772175 kcal Electronic energy + Delta-G solvation = -20596.092427 eV Core-core repulsion = 17511.888717 eV Total energy + Delta-G solvation = -3084.203710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04408 -39.09199 -38.19782 -35.58491 -34.18355 -32.62160 -31.95630 -30.12045 -29.18566 -27.88405 -25.88078 -24.55976 -23.51067 -22.30428 -21.80789 -21.28817 -19.04761 -18.95529 -17.20160 -16.61757 -16.49196 -16.39592 -16.24681 -15.97546 -15.41278 -15.20895 -14.75883 -14.67757 -14.41334 -14.12837 -13.95463 -13.67630 -13.58345 -13.27332 -13.02876 -12.86677 -12.75779 -12.67464 -12.11036 -11.99636 -11.86286 -11.76529 -11.74549 -11.58033 -11.45133 -11.39832 -11.26548 -10.75936 -9.91129 -9.22458 -8.93261 -8.29130 -6.33365 0.43332 0.50124 1.37181 1.39945 1.53066 2.37684 2.42181 2.83302 3.06617 3.38954 3.83374 3.90335 3.99873 4.16061 4.26479 4.32892 4.40053 4.43650 4.46831 4.52223 4.54767 4.59387 4.64706 4.73973 4.77145 4.82667 4.93198 4.93989 5.00617 5.08607 5.15207 5.26501 5.32781 5.37369 5.40467 5.46325 5.51222 5.55071 5.66397 5.83536 5.90598 6.23181 6.30176 6.49240 6.62414 6.76580 7.31514 8.87570 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.002872 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.961604 B = 9745.391177 C =10467.186028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.103 3.897 4 C -0.164 4.164 5 C -0.086 4.086 6 C -0.118 4.118 7 C -0.067 4.067 8 C -0.086 4.086 9 C 0.079 3.921 10 H 0.068 0.932 11 C -0.177 4.177 12 N -0.685 5.685 13 C 0.089 3.911 14 C -0.004 4.004 15 C -0.533 4.533 16 H 0.031 0.969 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.246 1.246 23 C -0.086 4.086 24 C -0.208 4.208 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.340 0.660 38 H 0.014 0.986 39 H 0.052 0.948 40 H 0.022 0.978 41 H 0.017 0.983 42 H 0.266 0.734 43 H 0.140 0.860 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 -20.340 -8.097 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.124 4.124 9 C -0.030 4.030 10 H 0.086 0.914 11 C -0.235 4.235 12 N -0.316 5.316 13 C -0.040 4.040 14 C -0.042 4.042 15 C -0.571 4.571 16 H 0.049 0.951 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.104 4.104 24 C -0.226 4.226 25 H 0.135 0.865 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.159 0.841 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.157 0.843 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.959 -20.690 -7.404 30.367 hybrid contribution 0.803 0.731 -0.445 1.174 sum -20.156 -19.959 -7.850 29.432 Atomic orbital electron populations 1.23310 0.76634 1.05429 1.02147 1.86033 1.23350 1.27023 1.88939 1.19208 0.92611 0.84730 0.97624 1.20613 0.91883 0.98970 1.06828 1.21066 1.00499 0.91103 0.97697 1.20047 0.93943 0.95586 1.02281 1.20412 1.00199 0.92208 0.97646 1.21444 0.99854 0.95097 0.95973 1.21666 0.90255 0.97458 0.93661 0.91403 1.22433 1.02913 1.00777 0.97410 1.60626 1.04046 1.27496 1.39391 1.21598 0.96122 0.89453 0.96792 1.19434 0.93806 0.94994 0.95953 1.21436 1.02007 0.96356 1.37318 0.95111 1.26025 0.99585 0.99392 0.94362 1.70073 1.21012 1.27537 1.40618 0.85590 0.78526 0.80179 0.77924 1.19137 1.21095 1.16995 1.21104 0.93970 0.97768 0.97514 1.21442 1.00942 0.91894 1.08347 0.86459 0.91920 0.91769 0.84880 0.84839 0.91257 0.91628 0.90719 0.91971 0.90700 0.91877 0.94103 0.84144 0.96775 0.92900 0.95921 0.96480 0.92498 0.84264 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.54 10.50 -92.42 -0.97 -7.51 16 3 C 0.10 2.15 6.69 22.50 0.15 2.30 16 4 C -0.16 -3.56 9.99 22.37 0.22 -3.34 16 5 C -0.09 -1.87 9.69 22.25 0.22 -1.66 16 6 C -0.12 -2.55 5.14 -19.85 -0.10 -2.65 16 7 C -0.07 -1.51 5.23 29.85 0.16 -1.35 16 8 C -0.09 -1.78 4.87 30.59 0.15 -1.63 16 9 C 0.08 1.96 2.59 44.91 0.12 2.07 16 10 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 11 C -0.18 -3.87 9.16 71.98 0.66 -3.21 16 12 N -0.68 -21.10 5.70 -491.58 -2.80 -23.91 16 13 C 0.09 3.53 5.42 86.30 0.47 4.00 16 14 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 15 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 16 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 19 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 23 C -0.09 -1.62 9.69 22.26 0.22 -1.41 16 24 C -0.21 -3.75 9.04 22.37 0.20 -3.55 16 25 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 27 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 28 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.07 1.85 7.69 -2.39 -0.02 1.83 16 31 H 0.07 1.45 8.08 -2.38 -0.02 1.43 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 36 H 0.04 1.03 7.45 -2.38 -0.02 1.01 16 37 H 0.34 9.91 8.47 -89.69 -0.76 9.15 16 38 H 0.01 0.57 7.44 -2.38 -0.02 0.55 16 39 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 40 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 41 H 0.02 0.77 7.57 -2.38 -0.02 0.76 16 42 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 Total: -1.00 -68.48 357.69 2.96 -65.52 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.14 Total: 18.68 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.41 Total: -39.53 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.50 Total: -84.12 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.97 Total: -7.51 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -68.48 2.96 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273202842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.748 kcal (2) G-P(sol) polarization free energy of solvation -68.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds