Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 O 1.42897 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.35897 * 117.00440 * 180.02562 * 4 3 2 6 6 C 1.38731 * 120.06133 * 179.97438 * 5 4 3 7 7 C 1.38142 * 119.94780 * 179.97438 * 6 5 4 8 8 C 1.38261 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.94426 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47294 * 19.99820 * 9 8 7 11 11 C 1.53002 * 109.47093 * 260.00110 * 9 8 7 12 12 N 1.46905 * 109.47206 * 140.00101 * 9 8 7 13 13 C 1.46901 * 110.99870 * 205.00135 * 12 9 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00107 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47051 * 60.00574 * 19 17 15 21 21 H 1.48501 * 109.46677 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47226 * 299.99990 * 19 17 15 23 23 C 1.38265 * 120.11305 * 0.27645 * 8 7 6 24 24 C 1.38141 * 120.05409 * 359.45048 * 23 8 7 25 25 H 1.08998 * 109.47525 * 300.00079 * 1 2 3 26 26 H 1.09002 * 109.47375 * 60.00498 * 1 2 3 27 27 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47525 * 239.99921 * 2 1 3 29 29 H 1.09002 * 109.47375 * 119.99502 * 2 1 3 30 30 H 1.09005 * 109.47489 * 60.00000 * 3 2 1 31 31 H 1.08998 * 109.47299 * 299.99953 * 3 2 1 32 32 H 1.08003 * 120.02341 * 359.95240 * 6 5 4 33 33 H 1.08001 * 119.97294 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46950 * 179.97438 * 11 9 8 35 35 H 1.09000 * 109.46959 * 299.99489 * 11 9 8 36 36 H 1.08999 * 109.47105 * 60.00118 * 11 9 8 37 37 H 1.00901 * 110.99869 * 81.04847 * 12 9 8 38 38 H 1.09004 * 109.47031 * 299.99620 * 13 12 9 39 39 H 1.08995 * 109.47111 * 59.99900 * 13 12 9 40 40 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 41 41 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 42 42 H 0.97007 * 120.00038 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.96977 * 179.70664 * 23 8 7 44 44 H 1.08004 * 120.03148 * 180.27824 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 5.4712 2.7275 -0.0001 7 6 6.0960 3.9595 -0.0002 8 6 5.3418 5.1183 -0.0008 9 6 6.0259 6.4611 -0.0015 10 1 7.0513 6.3463 -0.3528 11 6 6.0342 7.0300 1.4189 12 7 5.3028 7.3787 -0.8922 13 6 6.1905 8.4383 -1.3894 14 6 5.4034 9.3722 -2.3110 15 6 6.3139 10.4596 -2.8206 16 1 7.3501 10.4826 -2.5172 17 6 5.8239 11.4252 -3.6742 18 7 4.5620 11.3975 -4.0433 19 14 6.9523 12.7735 -4.3053 20 1 8.0770 12.1647 -5.0600 21 1 6.1884 13.6798 -5.1998 22 1 7.4883 13.5480 -3.1573 23 6 3.9609 5.0473 0.0044 24 6 3.3314 3.8177 -0.0012 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.0608 1.8225 0.0003 33 1 7.1744 4.0177 -0.0006 34 1 6.5294 8.0009 1.4184 35 1 5.0088 7.1448 1.7702 36 1 6.5707 6.3492 2.0798 37 1 4.4958 7.7702 -0.4301 38 1 6.5847 9.0070 -0.5472 39 1 7.0155 7.9908 -1.9436 40 1 5.0089 8.8038 -3.1532 41 1 4.5787 9.8197 -1.7563 42 1 4.2172 12.0770 -4.6436 43 1 3.3741 5.9540 0.0087 44 1 2.2528 3.7627 -0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273248683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -38.369033 kcal Electronic energy + Delta-G solvation = -20561.054678 eV Core-core repulsion = 17477.605625 eV Total energy + Delta-G solvation = -3083.449053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20928 -38.30049 -36.14341 -34.19542 -33.23023 -31.33789 -30.95974 -28.90649 -27.72899 -26.73335 -24.20174 -23.32773 -22.70470 -21.39913 -20.51046 -20.25019 -18.22277 -16.48234 -16.36815 -16.17028 -15.56108 -14.74484 -14.53879 -14.41404 -14.36002 -14.23305 -13.79580 -13.43207 -13.09754 -12.77261 -12.60719 -12.44273 -12.41582 -12.28835 -12.09784 -11.57927 -11.45400 -11.32755 -11.08420 -10.92396 -10.86684 -10.75476 -10.58899 -10.51573 -10.01141 -9.36939 -9.15172 -8.90776 -8.34343 -8.01386 -7.76631 -5.98628 -4.01197 1.43217 1.53344 3.05939 3.34117 3.38399 3.40765 3.83839 4.44332 4.54151 4.54612 4.71842 4.87124 4.88951 4.94977 5.05183 5.08496 5.11105 5.28552 5.35679 5.37289 5.43136 5.49158 5.55438 5.59176 5.69473 5.70210 5.83450 5.89304 5.94356 6.11471 6.20948 6.32354 6.38182 6.41571 6.53931 6.77591 6.84227 6.99434 7.40235 7.51594 7.73923 7.84119 7.96735 8.09985 8.44691 9.05931 9.62396 11.12775 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025750 B = 0.002707 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.101277 B =10341.836855 C =11020.211187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.320 6.320 5 C 0.118 3.882 6 C -0.154 4.154 7 C -0.080 4.080 8 C -0.093 4.093 9 C 0.122 3.878 10 H 0.082 0.918 11 C -0.176 4.176 12 N -0.684 5.684 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.057 4.057 24 C -0.208 4.208 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.335 0.665 38 H 0.017 0.983 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.013 0.987 42 H 0.261 0.739 43 H 0.125 0.875 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -20.664 11.590 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.235 6.235 5 C 0.073 3.927 6 C -0.172 4.172 7 C -0.098 4.098 8 C -0.094 4.094 9 C 0.011 3.989 10 H 0.100 0.900 11 C -0.235 4.235 12 N -0.314 5.314 13 C -0.062 4.062 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.075 4.075 24 C -0.227 4.227 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.143 0.857 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.446 -21.144 10.908 24.204 hybrid contribution 0.432 1.542 0.343 1.638 sum -4.014 -19.602 11.252 22.955 Atomic orbital electron populations 1.21693 0.94292 1.02453 1.02330 1.21477 0.96014 0.94992 1.03584 1.22838 0.78779 0.98562 1.01494 1.86006 1.21043 1.27379 1.89040 1.18940 0.92271 0.83870 0.97635 1.20307 0.91257 0.98364 1.07290 1.20805 0.99661 0.91004 0.98335 1.19811 0.93667 0.94635 1.01291 1.20409 0.97336 0.89933 0.91212 0.89987 1.22484 1.02097 1.01315 0.97577 1.60711 1.10081 1.21174 1.39397 1.22188 0.95667 0.90985 0.97312 1.19061 0.95101 0.92748 0.94290 1.21140 0.96390 1.10476 1.28041 0.92814 1.25005 0.95065 0.97981 0.96339 1.69963 1.13515 1.35008 1.34794 0.86645 0.80728 0.81760 0.78778 1.20215 1.21287 1.20309 1.20751 0.94213 0.96794 0.95768 1.21206 0.99750 0.92438 1.09283 0.92367 0.92250 0.91795 0.90864 0.90965 0.92165 0.91991 0.85635 0.85623 0.92136 0.92531 0.92451 0.84658 0.96523 0.92341 0.95663 0.96874 0.92947 0.85692 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.15 0.37 -0.46 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 3 C 0.06 0.53 4.74 37.16 0.18 0.70 16 4 O -0.32 -3.86 10.14 -19.42 -0.20 -4.06 16 5 C 0.12 1.53 6.69 -39.21 -0.26 1.26 16 6 C -0.15 -1.93 9.99 -39.43 -0.39 -2.32 16 7 C -0.08 -1.01 9.66 -39.61 -0.38 -1.39 16 8 C -0.09 -1.30 4.96 -104.60 -0.52 -1.82 16 9 C 0.12 1.78 2.79 -68.86 -0.19 1.59 16 10 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 11 C -0.18 -2.25 9.14 37.16 0.34 -1.91 16 12 N -0.68 -12.14 5.71 -107.94 -0.62 -12.75 16 13 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 14 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.06 -0.78 9.31 -39.61 -0.37 -1.15 16 24 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.13 1.34 8.03 -52.49 -0.42 0.92 16 34 H 0.06 0.81 7.45 -51.93 -0.39 0.43 16 35 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.34 5.71 7.82 -39.29 -0.31 5.41 16 38 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 39 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 1.66 7.25 -52.49 -0.38 1.28 16 44 H 0.12 1.32 6.30 -52.48 -0.33 0.99 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -31.12 360.44 -9.60 -40.71 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.59 Total: 1.56 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.34 Total: -21.28 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.12 Total: -39.14 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.12 -9.60 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273248683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.342 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds