Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 H 1.09008 * 109.47003 * 54.42378 * 3 2 1 5 5 N 1.46900 * 109.47106 * 294.43272 * 3 2 1 6 6 C 1.46895 * 111.00148 * 153.48531 * 5 3 2 7 7 C 1.53001 * 109.47273 * 174.78180 * 6 5 3 8 8 C 1.52996 * 109.47335 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47193 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99926 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00111 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99641 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99967 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46802 * 60.00365 * 13 11 9 15 15 H 1.48498 * 109.47054 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47324 * 300.00244 * 13 11 9 17 17 C 1.50693 * 109.47492 * 174.42651 * 3 2 1 18 18 C 1.38170 * 120.02570 * 99.72055 * 17 3 2 19 19 C 1.38246 * 120.05386 * 179.74997 * 18 17 3 20 20 C 1.38289 * 120.11364 * 0.55346 * 19 18 17 21 21 C 1.50691 * 119.97474 * 179.72600 * 20 19 18 22 22 C 1.38126 * 120.05065 * 359.70463 * 20 19 18 23 23 C 1.38708 * 120.03318 * 280.00292 * 17 3 2 24 24 O 1.35906 * 120.05137 * 359.95447 * 23 17 3 25 25 H 1.09003 * 109.46554 * 186.15966 * 1 2 3 26 26 H 1.08997 * 109.47322 * 306.15262 * 1 2 3 27 27 H 1.08997 * 109.47231 * 66.16441 * 1 2 3 28 28 H 1.08996 * 109.47184 * 240.00338 * 2 1 3 29 29 H 1.08998 * 109.47345 * 120.00095 * 2 1 3 30 30 H 1.00898 * 111.00294 * 29.52494 * 5 3 2 31 31 H 1.09002 * 109.47088 * 294.77764 * 6 5 3 32 32 H 1.08992 * 109.47592 * 54.78157 * 6 5 3 33 33 H 1.08998 * 109.47316 * 300.00244 * 7 6 5 34 34 H 1.09005 * 109.47120 * 59.99628 * 7 6 5 35 35 H 1.09002 * 109.47318 * 299.99762 * 8 7 6 36 36 H 1.08992 * 109.47301 * 60.00118 * 8 7 6 37 37 H 0.96996 * 119.99796 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.97129 * 0.02869 * 18 17 3 39 39 H 1.08007 * 119.94338 * 180.26090 * 19 18 17 40 40 H 1.08996 * 109.47242 * 269.97823 * 21 20 19 41 41 H 1.08997 * 109.47313 * 29.98058 * 21 20 19 42 42 H 1.08997 * 109.47442 * 149.97905 * 21 20 19 43 43 H 1.07999 * 120.02095 * 180.02562 * 22 20 19 44 44 H 0.96694 * 114.00383 * 90.00017 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 7 1.6631 2.0951 -1.2610 6 6 1.5477 3.5492 -1.0872 7 6 1.2829 4.2055 -2.4437 8 6 1.1621 5.7199 -2.2627 9 6 0.9019 6.3664 -3.5989 10 1 0.8296 5.7579 -4.4883 11 6 0.7552 7.7347 -3.6859 12 7 0.8428 8.4755 -2.6029 13 14 0.4335 8.5360 -5.3424 14 1 -0.8294 8.0028 -5.9132 15 1 0.3148 10.0058 -5.1664 16 1 1.5587 8.2365 -6.2641 17 6 3.5406 1.4449 0.1380 18 6 4.3373 1.6097 -0.9788 19 6 5.7140 1.6171 -0.8522 20 6 6.2974 1.4483 0.3902 21 6 7.7983 1.4507 0.5238 22 6 5.5053 1.2779 1.5089 23 6 4.1233 1.2758 1.3853 24 8 3.3419 1.1087 2.4846 25 1 -0.3632 -1.0218 0.1103 26 1 -0.3634 0.6062 0.8298 27 1 -0.3633 0.4153 -0.9400 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8078 1.7058 -1.6281 31 1 0.7228 3.7698 -0.4098 32 1 2.4754 3.9401 -0.6695 33 1 2.1078 3.9849 -3.1213 34 1 0.3551 3.8147 -2.8616 35 1 0.3370 5.9402 -1.5853 36 1 2.0896 6.1111 -1.8447 37 1 0.7393 9.4380 -2.6640 38 1 3.8842 1.7373 -1.9508 39 1 6.3350 1.7503 -1.7257 40 1 8.1748 0.4340 0.4113 41 1 8.2309 2.0859 -0.2492 42 1 8.0752 1.8340 1.5058 43 1 5.9614 1.1465 2.4790 44 1 3.1279 0.1859 2.6785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280168521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -67.505225 kcal Electronic energy + Delta-G solvation = -21363.719025 eV Core-core repulsion = 18279.006532 eV Total energy + Delta-G solvation = -3084.712493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10292 -38.42759 -37.75288 -36.08169 -34.32907 -33.15102 -31.94921 -30.75247 -29.06347 -27.66371 -25.55289 -24.16558 -23.46997 -22.63168 -21.89585 -21.09438 -18.79212 -18.49618 -17.43695 -17.06402 -16.55219 -16.45435 -15.99721 -15.79824 -15.38593 -14.76866 -14.52312 -14.50408 -14.33690 -14.05386 -13.93592 -13.56533 -13.41654 -13.22258 -12.96724 -12.75032 -12.61647 -12.48338 -12.45528 -12.35027 -12.10367 -11.90920 -11.81504 -11.53110 -11.37627 -11.24665 -11.05573 -10.55583 -9.64761 -9.43831 -9.27030 -8.20067 -6.31828 0.33736 0.46659 1.39649 1.43439 1.51357 2.40989 2.72331 3.12804 3.13669 3.33572 3.77201 4.01141 4.07291 4.09289 4.17408 4.24864 4.36293 4.42182 4.49053 4.51015 4.69631 4.72019 4.83784 4.85642 4.85915 4.95838 4.97694 5.02798 5.07726 5.13890 5.20527 5.23643 5.31675 5.37140 5.48202 5.50610 5.63452 5.69929 5.73494 5.84850 6.02281 6.09148 6.26021 6.51565 6.84988 6.87312 7.37561 8.91930 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.003792 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.816363 B = 7382.084811 C = 8400.050910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C 0.132 3.868 4 H 0.041 0.959 5 N -0.678 5.678 6 C 0.078 3.922 7 C -0.087 4.087 8 C 0.025 3.975 9 C -0.543 4.543 10 H 0.062 0.938 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.120 4.120 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.081 4.081 21 C -0.111 4.111 22 C -0.160 4.160 23 C 0.100 3.900 24 O -0.506 6.506 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.349 0.651 31 H 0.018 0.982 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.054 0.946 35 H -0.012 1.012 36 H -0.014 1.014 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -21.737 7.936 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.022 3.978 4 H 0.059 0.941 5 N -0.312 5.312 6 C -0.051 4.051 7 C -0.125 4.125 8 C -0.012 4.012 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.200 4.200 12 N -0.576 5.576 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.121 4.121 18 C -0.102 4.102 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.167 4.167 22 C -0.178 4.178 23 C 0.055 3.945 24 O -0.318 6.318 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.170 0.830 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.007 0.993 36 H 0.004 0.996 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.158 0.842 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.690 -20.943 7.803 23.979 hybrid contribution -1.131 0.635 -0.042 1.298 sum 7.559 -20.307 7.760 23.016 Atomic orbital electron populations 1.21835 0.94865 1.02861 1.01682 1.21590 0.96287 0.93564 1.03265 1.20277 0.90927 0.95926 0.90675 0.94091 1.60388 1.40077 1.03013 1.27676 1.21770 0.98740 0.87849 0.96780 1.21330 1.00519 0.94892 0.95798 1.18962 0.94412 0.92212 0.95638 1.21667 1.48846 0.92717 0.94901 0.92015 1.26028 0.94943 0.98225 1.00759 1.70106 1.51220 1.05839 1.30402 0.85467 0.79264 0.77005 0.79113 1.18986 1.20816 1.19093 1.20302 0.96158 1.03010 0.92636 1.21141 0.93180 0.96676 0.99236 1.21366 0.94931 1.02146 0.97958 1.20110 0.97486 0.98055 0.92467 1.20827 0.89204 1.03355 1.03362 1.21407 0.92411 1.04324 0.99660 1.18396 0.89523 1.01245 0.85348 1.84779 1.70011 1.33254 1.43767 0.90564 0.93207 0.92770 0.90887 0.90190 0.82976 0.96334 0.93416 0.92738 0.92769 0.99337 0.99585 0.92782 0.85109 0.84804 0.89662 0.90965 0.90821 0.84228 0.73814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.64 71.98 0.69 -1.91 16 2 C -0.11 -2.02 5.49 30.60 0.17 -1.85 16 3 C 0.13 3.38 1.91 44.17 0.08 3.47 16 4 H 0.04 1.21 7.55 -2.38 -0.02 1.19 16 5 N -0.68 -19.71 4.90 -495.46 -2.43 -22.14 16 6 C 0.08 2.89 5.45 86.30 0.47 3.36 16 7 C -0.09 -3.77 5.46 30.59 0.17 -3.60 16 8 C 0.03 1.41 4.97 29.85 0.15 1.56 16 9 C -0.54 -31.98 9.11 25.60 0.23 -31.74 16 10 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 11 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 12 N -0.94 -58.70 13.29 21.45 0.28 -58.42 16 13 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C -0.12 -3.24 4.87 -19.77 -0.10 -3.33 16 18 C -0.08 -2.34 9.33 22.26 0.21 -2.13 16 19 C -0.15 -3.58 9.70 22.28 0.22 -3.36 16 20 C -0.08 -1.78 5.88 -19.88 -0.12 -1.89 16 21 C -0.11 -1.69 10.01 71.23 0.71 -0.98 16 22 C -0.16 -3.60 9.64 22.36 0.22 -3.38 16 23 C 0.10 2.47 6.67 22.50 0.15 2.62 16 24 O -0.51 -10.95 12.66 -92.50 -1.17 -12.13 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.96 6.67 -2.39 -0.02 0.94 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 30 H 0.35 9.13 6.64 -89.70 -0.60 8.53 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 1.94 7.97 -2.39 -0.02 1.92 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.13 3.87 7.14 -2.91 -0.02 3.85 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 42 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.40 4.61 8.63 -74.06 -0.64 3.97 16 Total: -1.00 -70.02 359.13 2.17 -67.85 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.26 Total: 20.46 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 3.72 Total: -42.83 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.14 Total: -80.56 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.17 Total: -12.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.02 2.17 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280168521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.350 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds