Wall clock time and date at job start Mon Mar 30 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47291 * 10.23598 * 3 2 1 5 5 C 1.37101 * 120.00034 * 87.50512 * 4 3 2 6 6 H 1.07993 * 120.00084 * 311.08506 * 5 4 3 7 7 C 1.38944 * 119.99716 * 131.08998 * 5 4 3 8 8 N 1.31411 * 120.00142 * 160.61584 * 7 5 4 9 9 Si 1.86805 * 120.00039 * 340.61580 * 7 5 4 10 10 H 1.48498 * 109.47159 * 94.34836 * 9 7 5 11 11 H 1.48503 * 109.46997 * 214.34611 * 9 7 5 12 12 H 1.48499 * 109.47166 * 334.34452 * 9 7 5 13 13 C 1.34771 * 119.99604 * 267.50578 * 4 3 2 14 14 O 1.21295 * 119.99650 * 183.40968 * 13 4 3 15 15 C 1.50699 * 120.00337 * 3.41654 * 13 4 3 16 16 H 1.09004 * 109.46734 * 325.59490 * 15 13 4 17 17 C 1.52996 * 109.47536 * 85.59383 * 15 13 4 18 18 C 1.53002 * 109.47197 * 205.59704 * 15 13 4 19 19 C 1.52995 * 109.47134 * 174.99552 * 18 15 13 20 20 C 1.53002 * 109.47175 * 174.99782 * 19 18 15 21 21 C 1.52995 * 109.47175 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47307 * 299.99900 * 21 20 19 23 23 C 1.53003 * 109.46571 * 60.00365 * 22 21 20 24 24 C 1.52998 * 109.47230 * 299.99532 * 23 22 21 25 25 H 4.40648 * 5.51407 * 179.97438 * 4 1 2 26 26 H 1.08994 * 109.47282 * 250.23106 * 3 2 1 27 27 H 1.09002 * 109.46512 * 130.23242 * 3 2 1 28 28 H 0.96998 * 120.00166 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47103 * 65.13200 * 17 15 13 30 30 H 1.09000 * 109.47230 * 185.13679 * 17 15 13 31 31 H 1.09004 * 109.47093 * 305.13514 * 17 15 13 32 32 H 1.09001 * 109.46995 * 54.99473 * 18 15 13 33 33 H 1.09002 * 109.46893 * 294.99638 * 18 15 13 34 34 H 1.09002 * 109.47154 * 54.99925 * 19 18 15 35 35 H 1.09002 * 109.46962 * 60.00026 * 20 19 18 36 36 H 1.08996 * 109.47275 * 300.00224 * 20 19 18 37 37 H 1.09009 * 109.47289 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47154 * 60.00144 * 21 20 19 39 39 H 1.09004 * 109.47279 * 180.02562 * 22 21 20 40 40 H 1.08989 * 109.46974 * 300.00082 * 22 21 20 41 41 H 1.08993 * 109.47246 * 60.00026 * 23 22 21 42 42 H 1.09003 * 109.46299 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47160 * 300.01089 * 24 23 22 44 44 H 1.08995 * 109.47609 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3584 -0.2454 5 6 3.3150 -1.8005 -1.5307 6 1 2.5317 -1.6675 -2.2621 7 6 4.5052 -2.4198 -1.8920 8 7 4.5543 -3.1714 -2.9688 9 14 6.0356 -2.1838 -0.8471 10 1 6.1470 -3.2995 0.1266 11 1 7.2351 -2.1692 -1.7224 12 1 5.9413 -0.8953 -0.1150 13 6 3.4079 -2.1739 0.7922 14 8 3.8711 -3.2768 0.5912 15 6 3.1374 -1.7158 2.2022 16 1 3.3227 -0.6443 2.2778 17 6 1.6795 -2.0079 2.5626 18 6 4.0607 -2.4624 3.1670 19 6 3.8749 -1.9095 4.5814 20 6 4.7039 -2.7372 5.5656 21 6 4.5185 -2.1840 6.9799 22 6 4.9822 -0.7265 7.0223 23 6 4.1531 0.1012 6.0382 24 6 4.3385 -0.4520 4.6238 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.3484 0.9670 27 1 3.0090 0.6646 -0.7846 28 1 5.3852 -3.6035 -3.2212 29 1 1.5174 -3.0856 2.5757 30 1 1.4589 -1.5952 3.5470 31 1 1.0234 -1.5508 1.8217 32 1 5.0968 -2.3263 2.8569 33 1 3.8149 -3.5243 3.1567 34 1 2.8218 -1.9644 4.8575 35 1 5.7569 -2.6824 5.2895 36 1 4.3739 -3.7756 5.5351 37 1 5.1095 -2.7734 7.6811 38 1 3.4655 -2.2384 7.2563 39 1 4.8505 -0.3324 8.0300 40 1 6.0351 -0.6721 6.7460 41 1 3.1002 0.0467 6.3145 42 1 4.4831 1.1396 6.0687 43 1 5.3914 -0.3976 4.3475 44 1 3.7482 0.1378 3.9226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281474982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:08 Heat of formation + Delta-G solvation = -1.148433 kcal Electronic energy + Delta-G solvation = -22661.196166 eV Core-core repulsion = 19579.361119 eV Total energy + Delta-G solvation = -3081.835047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.59584 -38.42098 -35.14470 -34.45953 -32.56396 -31.52343 -30.85708 -30.38812 -26.77964 -26.05165 -24.96151 -22.89702 -22.37702 -20.70496 -19.63237 -18.80930 -18.03749 -16.99113 -15.99025 -15.40115 -15.22739 -14.72451 -14.24768 -14.23101 -14.01929 -13.73930 -13.54017 -12.95342 -12.78960 -12.61338 -12.55158 -12.20866 -12.03147 -11.86321 -11.64171 -11.60852 -11.14322 -11.05122 -10.94783 -10.74828 -10.62336 -10.42216 -10.17452 -9.99077 -9.96857 -9.88614 -9.81635 -9.53278 -8.58867 -8.37103 -7.63062 -6.19224 -4.00695 3.19316 3.31116 3.32537 3.42923 3.59653 3.84336 4.46235 4.52694 4.67994 4.71471 4.78499 4.91577 5.14223 5.14966 5.20843 5.31178 5.38492 5.45179 5.50121 5.52039 5.59333 5.63679 5.64846 5.76373 5.90059 5.95653 6.01513 6.07825 6.11742 6.12616 6.15913 6.20855 6.23389 6.31120 6.32435 6.39510 6.41361 6.50056 6.69439 6.72149 7.86796 8.06000 8.09691 8.79774 8.95396 9.43375 9.84095 10.88040 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.006017 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.203813 B = 4652.544921 C = 5520.586021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C 0.200 3.800 4 N -0.466 5.466 5 C -0.351 4.351 6 H 0.090 0.910 7 C 0.098 3.902 8 N -0.866 5.866 9 Si 0.895 3.105 10 H -0.258 1.258 11 H -0.301 1.301 12 H -0.276 1.276 13 C 0.469 3.531 14 O -0.538 6.538 15 C -0.112 4.112 16 H 0.082 0.918 17 C -0.139 4.139 18 C -0.096 4.096 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.210 0.790 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.272 0.728 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 7.452 17.899 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.170 4.170 3 C 0.077 3.923 4 N -0.189 5.189 5 C -0.477 4.477 6 H 0.108 0.892 7 C -0.111 4.111 8 N -0.500 5.500 9 Si 0.723 3.277 10 H -0.183 1.183 11 H -0.229 1.229 12 H -0.201 1.201 13 C 0.258 3.742 14 O -0.418 6.418 15 C -0.134 4.134 16 H 0.100 0.900 17 C -0.197 4.197 18 C -0.134 4.134 19 C -0.105 4.105 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.227 0.773 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.734 6.746 17.634 18.959 hybrid contribution 0.509 0.159 0.264 0.595 sum -1.225 6.905 17.898 19.223 Atomic orbital electron populations 1.24701 0.95719 1.01245 1.02934 1.23957 0.95174 0.99320 0.98589 1.18716 0.83522 0.88251 1.01857 1.43605 1.60132 1.08921 1.06230 1.18734 1.01962 1.41530 0.85435 0.89239 1.25297 0.98479 0.92794 0.94545 1.69756 1.27676 1.26616 1.25969 0.86585 0.81096 0.79305 0.80697 1.18279 1.22886 1.20097 1.20536 0.81831 0.85520 0.86297 1.90559 1.45311 1.20997 1.84919 1.21360 0.97176 1.00872 0.93944 0.89998 1.21762 0.94570 1.02231 1.01106 1.21462 0.99238 1.00325 0.92388 1.21223 0.99916 0.94564 0.94826 1.21583 1.00397 0.99096 0.94188 1.21527 1.01109 0.95885 0.97032 1.21537 0.99889 0.95464 0.98805 1.21526 1.00052 0.98689 0.95291 1.21672 1.01588 0.96017 0.96343 0.77262 0.89857 0.88389 0.91847 0.92406 0.92441 0.91769 0.92144 0.90940 0.90904 0.92076 0.91986 0.92418 0.92173 0.92518 0.92165 0.92160 0.92345 0.92045 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.60 18.70 29.55 0.55 -3.05 16 2 C -0.17 -3.04 11.84 -37.12 -0.44 -3.48 16 3 C 0.20 3.77 5.69 -6.82 -0.04 3.74 16 4 N -0.47 -11.28 1.99 -117.93 -0.23 -11.51 16 5 C -0.35 -10.05 9.57 -14.93 -0.14 -10.20 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 7 C 0.10 2.91 4.83 -17.47 -0.08 2.83 16 8 N -0.87 -26.80 13.96 55.50 0.77 -26.03 16 9 Si 0.89 23.71 25.25 -169.99 -4.29 19.42 16 10 H -0.26 -7.16 6.55 56.52 0.37 -6.78 16 11 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.47 11.14 5.16 -10.99 -0.06 11.09 16 14 O -0.54 -15.07 12.49 5.54 0.07 -15.00 16 15 C -0.11 -1.98 1.96 -91.77 -0.18 -2.16 16 16 H 0.08 1.29 4.15 -51.93 -0.22 1.08 16 17 C -0.14 -2.19 8.81 37.16 0.33 -1.87 16 18 C -0.10 -1.58 3.60 -26.73 -0.10 -1.68 16 19 C -0.09 -1.08 2.05 -90.62 -0.19 -1.27 16 20 C -0.12 -1.31 5.20 -26.73 -0.14 -1.45 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 23 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 24 C -0.12 -1.37 4.96 -26.73 -0.13 -1.50 16 25 H 0.21 2.48 7.80 -54.10 -0.42 2.06 16 26 H 0.08 1.32 5.79 -51.93 -0.30 1.02 16 27 H 0.10 1.77 8.06 -51.93 -0.42 1.36 16 28 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.73 6.71 -51.93 -0.35 0.38 16 31 H 0.06 1.06 5.48 -51.93 -0.28 0.78 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.07 0.87 6.45 -51.93 -0.34 0.54 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.75 6.46 -51.93 -0.34 0.42 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -33.39 339.47 -6.98 -40.36 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.32 Total: 0.46 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.09 Total: -12.82 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.54 Total: -37.54 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.07 Total: -15.00 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.29 Total: 19.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.39 -6.98 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281474982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.216 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds