Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46673 * 2 1 4 4 O 1.42901 * 109.47149 * 119.99439 * 2 1 3 5 5 C 1.42901 * 113.99752 * 149.99866 * 4 2 1 6 6 H 1.09000 * 109.47087 * 30.01064 * 5 4 2 7 7 C 1.53000 * 109.46928 * 150.00223 * 5 4 2 8 8 N 1.46905 * 109.47114 * 300.00575 * 7 5 4 9 9 C 1.46900 * 110.99850 * 293.94896 * 8 7 5 10 10 C 1.46906 * 111.00051 * 169.99929 * 8 7 5 11 11 C 1.50699 * 109.47140 * 189.99841 * 10 8 7 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 8 13 13 C 1.37873 * 119.99861 * 180.02562 * 11 10 8 14 14 N 1.31522 * 120.00244 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47229 * 89.99965 * 15 13 11 17 17 H 1.48500 * 109.46876 * 209.99805 * 15 13 11 18 18 H 1.48499 * 109.47161 * 329.99530 * 15 13 11 19 19 C 1.50693 * 109.47659 * 270.00365 * 5 4 2 20 20 C 1.38236 * 119.99913 * 324.72830 * 19 5 4 21 21 C 1.38234 * 120.00003 * 179.78584 * 20 19 5 22 22 C 1.38238 * 120.00005 * 0.44004 * 21 20 19 23 23 C 1.38237 * 119.99789 * 359.81617 * 22 21 20 24 24 C 1.38233 * 119.99905 * 145.00039 * 19 5 4 25 25 H 1.08996 * 109.47786 * 300.00018 * 1 2 3 26 26 H 1.09003 * 109.47390 * 60.00770 * 1 2 3 27 27 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47473 * 240.00232 * 2 1 3 29 29 H 1.08997 * 109.47321 * 60.00240 * 3 2 1 30 30 H 1.09001 * 109.46840 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47057 * 299.99338 * 3 2 1 32 32 H 1.08997 * 109.47704 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.47058 * 59.99936 * 7 5 4 34 34 H 1.08996 * 109.47030 * 296.04770 * 9 8 7 35 35 H 1.08999 * 109.46702 * 56.04909 * 9 8 7 36 36 H 1.08996 * 109.46890 * 176.04778 * 9 8 7 37 37 H 1.09004 * 109.47040 * 309.99779 * 10 8 7 38 38 H 1.09000 * 109.47033 * 69.99731 * 10 8 7 39 39 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 40 40 H 1.07998 * 119.99793 * 359.97438 * 20 19 5 41 41 H 1.07996 * 120.00317 * 180.27359 * 21 20 19 42 42 H 1.07994 * 120.00305 * 179.83121 * 22 21 20 43 43 H 1.07999 * 119.99778 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00226 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8530 -0.7829 0.2469 7 6 4.0211 -1.3469 2.3192 8 7 4.2422 0.0304 2.7800 9 6 5.1496 0.7489 1.8754 10 6 4.7495 0.0492 4.1586 11 6 4.7317 1.4626 4.6811 12 1 4.3792 2.2666 4.0520 13 6 5.1663 1.7295 5.9621 14 7 5.5960 0.7505 6.7281 15 14 5.1436 3.4813 6.6101 16 1 3.8376 3.7505 7.2636 17 1 6.2375 3.6575 7.5988 18 1 5.3378 4.4286 5.4831 19 6 3.0391 -2.7372 0.5160 20 6 1.9501 -3.4535 0.9762 21 6 1.7395 -4.7480 0.5392 22 6 2.6230 -5.3292 -0.3511 23 6 3.7149 -4.6147 -0.8073 24 6 3.9231 -3.3187 -0.3736 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 4.9821 -1.8429 2.1833 33 1 3.4340 -1.8883 3.0610 34 1 6.1309 0.2749 1.8932 35 1 4.7502 0.7195 0.8616 36 1 5.2408 1.7853 2.2001 37 1 4.1175 -0.5785 4.7869 38 1 5.7707 -0.3315 4.1752 39 1 5.9022 0.9383 7.6291 40 1 1.2622 -3.0008 1.6749 41 1 0.8864 -5.3061 0.8953 42 1 2.4600 -6.3414 -0.6905 43 1 4.4053 -5.0689 -1.5025 44 1 4.7761 -2.7604 -0.7301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292403193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -41.192193 kcal Electronic energy + Delta-G solvation = -22103.755943 eV Core-core repulsion = 19020.184469 eV Total energy + Delta-G solvation = -3083.571475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77323 -38.99703 -37.87166 -34.90063 -34.01112 -32.20437 -31.69908 -29.93722 -28.64749 -28.05913 -26.69763 -24.35690 -23.47319 -22.41551 -21.96358 -21.40194 -18.52166 -18.03979 -17.76796 -16.78879 -16.51143 -16.04709 -15.88995 -15.54690 -15.46173 -15.17235 -14.88041 -14.24229 -14.17231 -13.87303 -13.71025 -13.65962 -13.35588 -13.14222 -13.01502 -12.89743 -12.72960 -12.56357 -12.52667 -12.40006 -12.13522 -11.94187 -11.87335 -11.69691 -11.41334 -11.24367 -10.61217 -10.40305 -9.79466 -9.65491 -8.96658 -8.19646 -6.29720 0.41956 0.52907 1.40622 1.42946 1.53662 2.40628 2.76384 2.87687 3.12613 3.30074 3.86562 3.97227 4.02383 4.16286 4.19894 4.24184 4.30865 4.34258 4.37366 4.43204 4.55153 4.66158 4.69650 4.71851 4.80735 4.85270 4.94380 5.00181 5.01654 5.08967 5.09651 5.16475 5.19415 5.29814 5.36357 5.46755 5.58423 5.63953 5.65303 5.70433 6.04975 6.13505 6.33315 6.50372 6.65239 6.86223 7.39790 8.91745 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.004550 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.053073 B = 6152.426162 C = 6940.045353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 C -0.168 4.168 4 O -0.372 6.372 5 C 0.150 3.850 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.534 5.534 9 C 0.041 3.959 10 C 0.209 3.791 11 C -0.519 4.519 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.010 0.990 35 H 0.076 0.924 36 H 0.057 0.943 37 H -0.003 1.003 38 H -0.038 1.038 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 -8.034 -19.058 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 C -0.225 4.225 4 O -0.291 6.291 5 C 0.092 3.908 6 H 0.091 0.909 7 C -0.062 4.062 8 N -0.257 5.257 9 C -0.107 4.107 10 C 0.083 3.917 11 C -0.558 4.558 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.016 0.984 38 H -0.021 1.021 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.565 -7.815 -18.716 21.647 hybrid contribution 1.124 0.306 0.868 1.453 sum -6.441 -7.508 -17.848 20.407 Atomic orbital electron populations 1.21818 0.92868 1.02434 1.02802 1.22221 0.95647 0.92398 0.87728 1.22279 1.01246 0.96759 1.02256 1.88052 1.35487 1.69393 1.36154 1.20782 0.85562 0.88997 0.95489 0.90937 1.22112 0.97486 0.90452 0.96165 1.61949 1.47556 1.13407 1.02818 1.22273 0.93050 0.99152 0.96244 1.19376 0.90898 0.96525 0.84903 1.21438 1.41670 0.93820 0.98831 0.91885 1.25929 0.94823 1.01931 0.97033 1.70097 1.44577 1.33840 1.09213 0.85369 0.77811 0.79156 0.78193 1.19987 1.20671 1.18689 1.20456 0.96840 0.96524 0.98499 1.21079 0.97386 0.94848 0.99379 1.21431 1.00443 0.94746 0.98075 1.21514 0.94508 1.00866 0.97094 1.21432 0.98417 0.93997 1.00410 1.21235 0.98998 0.96497 0.97332 0.92959 0.89331 0.92348 0.92006 0.93487 0.93156 0.90005 0.94580 0.92661 0.97195 0.90557 0.92380 0.98441 1.02081 0.92719 0.86825 0.84365 0.83507 0.83575 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.56 71.98 0.69 -2.43 16 2 C 0.08 2.00 3.12 30.60 0.10 2.10 16 3 C -0.17 -4.31 9.52 71.98 0.69 -3.62 16 4 O -0.37 -12.33 8.66 -148.98 -1.29 -13.62 16 5 C 0.15 4.70 1.99 29.85 0.06 4.76 16 6 H 0.07 2.10 5.86 -2.39 -0.01 2.08 16 7 C 0.07 2.59 4.63 86.30 0.40 2.99 16 8 N -0.53 -24.30 4.62 -927.03 -4.28 -28.58 16 9 C 0.04 1.62 9.16 127.69 1.17 2.79 16 10 C 0.21 11.73 4.72 85.56 0.40 12.14 16 11 C -0.52 -30.46 8.52 25.60 0.22 -30.24 16 12 H 0.06 3.62 7.10 -2.91 -0.02 3.60 16 13 C 0.00 0.03 5.46 84.65 0.46 0.49 16 14 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 15 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.12 -3.36 4.94 -19.87 -0.10 -3.46 16 20 C -0.11 -2.92 9.35 22.27 0.21 -2.71 16 21 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 22 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.12 -2.38 10.05 22.27 0.22 -2.15 16 24 C -0.12 -2.83 9.68 22.27 0.22 -2.61 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.44 7.79 -2.39 -0.02 1.42 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.35 6.35 -2.39 -0.02 1.34 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.08 2.47 4.69 -2.39 -0.01 2.46 16 36 H 0.06 2.46 6.86 -2.39 -0.02 2.45 16 37 H 0.00 -0.16 7.93 -2.38 -0.02 -0.17 16 38 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.11 3.31 7.64 -2.91 -0.02 3.29 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -68.47 356.01 2.86 -65.61 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.94 Total: 13.43 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 5.18 Total: -26.55 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -4.00 Total: -86.25 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.29 Total: -13.62 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.47 2.86 -65.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292403193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.417 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds