Wall clock time and date at job start Mon Mar 30 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46735 * 2 1 4 4 C 1.52998 * 109.46972 * 120.00091 * 2 1 3 5 5 C 1.52994 * 109.47395 * 65.00171 * 4 2 1 6 6 H 1.08997 * 109.47252 * 304.99867 * 5 4 2 7 7 C 1.53005 * 109.47307 * 64.99820 * 5 4 2 8 8 C 1.53002 * 109.47289 * 184.99568 * 5 4 2 9 9 N 1.46497 * 109.47103 * 174.99790 * 8 5 4 10 10 C 1.39668 * 119.99969 * 180.02562 * 9 8 5 11 11 C 1.39011 * 120.04085 * 359.97438 * 10 9 8 12 12 C 1.38149 * 120.06218 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14500 * 359.72293 * 12 11 10 14 14 C 1.38918 * 120.07431 * 0.55384 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.72007 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31558 * 119.99943 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99837 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 90.00115 * 20 18 16 22 22 H 1.48508 * 109.46728 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.47044 * 329.99801 * 20 18 16 24 24 C 1.38757 * 119.94038 * 359.44745 * 14 13 12 25 25 H 1.08996 * 109.46988 * 299.99915 * 1 2 3 26 26 H 1.08997 * 109.47277 * 59.99877 * 1 2 3 27 27 H 1.09007 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46988 * 240.00084 * 2 1 3 29 29 H 1.09007 * 109.47111 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47338 * 300.00085 * 3 2 1 31 31 H 1.08996 * 109.47314 * 60.00284 * 3 2 1 32 32 H 1.09002 * 109.47275 * 304.99901 * 4 2 1 33 33 H 1.09001 * 109.46993 * 185.00102 * 4 2 1 34 34 H 1.09007 * 109.46865 * 300.00232 * 7 5 4 35 35 H 1.08997 * 109.46926 * 59.99848 * 7 5 4 36 36 H 1.09000 * 109.46948 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.46740 * 55.00403 * 8 5 4 38 38 H 1.08996 * 109.46959 * 295.00101 * 8 5 4 39 39 H 0.97005 * 120.00018 * 0.02562 * 9 8 5 40 40 H 1.07992 * 119.96556 * 0.02562 * 11 10 9 41 41 H 1.08004 * 119.92685 * 180.02562 * 12 11 10 42 42 H 1.07999 * 119.96177 * 180.29756 * 13 12 11 43 43 H 0.97001 * 120.00127 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.07612 * 180.29913 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.3450 -2.8708 0.0126 8 6 2.0355 -2.8888 2.4918 9 7 1.5428 -4.2684 2.4824 10 6 1.7868 -5.1046 3.5742 11 6 2.4977 -4.6288 4.6700 12 6 2.7398 -5.4556 5.7499 13 6 2.2717 -6.7557 5.7471 14 6 1.5656 -7.2390 4.6527 15 8 1.1110 -8.5182 4.6486 16 6 0.3316 -8.8874 3.6122 17 1 0.1621 -8.2038 2.7935 18 6 -0.2523 -10.1449 3.5975 19 7 -0.0462 -10.9776 4.5950 20 14 -1.3317 -10.6568 2.1614 21 1 -0.4951 -11.3059 1.1203 22 1 -2.3641 -11.6136 2.6345 23 1 -1.9938 -9.4577 1.5878 24 6 1.3205 -6.4114 3.5663 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0599 -2.3768 -0.9163 35 1 3.4239 -2.7955 0.1479 36 1 2.0563 -3.9209 -0.0312 37 1 1.6010 -2.3536 3.3361 38 1 3.1216 -2.8915 2.5833 39 1 1.0470 -4.6012 1.7179 40 1 2.8610 -3.6118 4.6770 41 1 3.2919 -5.0835 6.6003 42 1 2.4585 -7.3980 6.5950 43 1 -0.4544 -11.8574 4.5846 44 1 0.7676 -6.7835 2.7163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302456549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:41 Heat of formation + Delta-G solvation = -30.232709 kcal Electronic energy + Delta-G solvation = -21015.138001 eV Core-core repulsion = 17932.041765 eV Total energy + Delta-G solvation = -3083.096236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.12572 -38.27998 -36.76883 -34.90633 -32.57332 -32.04905 -29.18305 -28.11309 -27.45785 -27.02571 -25.34416 -25.12878 -21.84530 -21.22912 -20.24802 -19.65627 -17.81284 -17.27180 -15.92201 -15.71574 -15.10466 -14.84788 -14.75314 -14.21881 -14.14812 -13.72151 -13.59529 -13.50623 -13.21668 -12.83653 -12.74066 -12.54661 -12.27039 -12.19073 -11.70885 -11.59903 -11.50248 -11.43177 -11.19553 -10.91122 -10.82074 -10.70142 -10.62104 -10.48661 -10.46802 -10.33941 -9.34827 -9.31290 -8.71900 -7.29514 -6.70675 -6.37230 -3.96340 2.43613 2.63052 3.16311 3.17238 3.21627 3.82634 4.02771 4.48126 4.57108 4.63757 4.75457 4.86031 4.98725 5.11843 5.19619 5.32484 5.34916 5.38413 5.42082 5.48725 5.58649 5.63619 5.69792 5.71804 5.75952 5.77931 5.86772 5.93151 5.98240 6.03235 6.05559 6.18666 6.27692 6.33366 6.42076 6.71070 6.71322 7.10210 7.20068 7.44330 7.54375 7.72941 8.08911 8.09586 8.27420 9.09027 9.82382 10.81306 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.003469 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.992357 B = 8070.224322 C = 9234.205506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.105 4.105 6 H 0.078 0.922 7 C -0.148 4.148 8 C 0.137 3.863 9 N -0.753 5.753 10 C 0.249 3.751 11 C -0.279 4.279 12 C -0.040 4.040 13 C -0.237 4.237 14 C 0.189 3.811 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.303 4.303 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.393 0.607 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.268 0.732 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 20.429 -8.780 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.124 4.124 6 H 0.096 0.904 7 C -0.205 4.205 8 C 0.012 3.988 9 N -0.385 5.385 10 C 0.148 3.852 11 C -0.302 4.302 12 C -0.059 4.059 13 C -0.258 4.258 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.464 4.464 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.327 4.327 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.227 0.773 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.000 20.177 -8.508 22.102 hybrid contribution -0.744 -0.358 -1.057 1.341 sum 2.256 19.818 -9.565 22.121 Atomic orbital electron populations 1.21907 0.95324 1.01984 1.01540 1.21159 0.95909 0.95965 0.98670 1.21843 1.00887 0.96134 1.01624 1.21613 1.01004 0.93953 0.97909 1.21413 1.01089 0.94876 0.94990 0.90421 1.21882 1.00569 1.00596 0.97474 1.21215 0.98415 0.82672 0.96516 1.44551 1.63417 1.11007 1.19572 1.17478 0.92005 0.89076 0.86663 1.20072 1.13265 1.00252 0.96623 1.20376 0.96431 0.92677 0.96454 1.20035 1.09838 0.96731 0.99211 1.19068 0.90692 0.84665 0.92090 1.83988 1.58176 1.21208 1.44888 1.21292 1.26256 1.00312 0.98587 0.89238 1.25262 0.97722 0.95149 0.98460 1.70043 1.42276 1.07473 1.30307 0.85743 0.79192 0.78830 0.79815 1.19987 1.20319 1.19328 1.20500 1.15505 0.93887 1.02769 0.92724 0.93006 0.92311 0.90930 0.92770 0.92885 0.92751 0.91724 0.91725 0.92559 0.92591 0.92438 0.92923 0.92864 0.77260 0.87931 0.87268 0.86961 0.92162 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.95 37.16 0.33 -0.78 16 2 C -0.10 -0.72 2.78 -90.62 -0.25 -0.97 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.62 16 4 C -0.11 -0.85 4.15 -26.73 -0.11 -0.96 16 5 C -0.11 -0.98 2.29 -90.62 -0.21 -1.19 16 6 H 0.08 0.75 6.34 -51.93 -0.33 0.42 16 7 C -0.15 -1.38 8.83 37.16 0.33 -1.05 16 8 C 0.14 1.64 4.30 -4.04 -0.02 1.63 16 9 N -0.75 -11.45 5.46 -58.65 -0.32 -11.77 16 10 C 0.25 4.80 6.65 -83.81 -0.56 4.25 16 11 C -0.28 -5.15 9.31 -39.33 -0.37 -5.51 16 12 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 13 C -0.24 -5.31 9.99 -39.35 -0.39 -5.70 16 14 C 0.19 4.78 6.64 -39.14 -0.26 4.52 16 15 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 16 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.87 -25.92 13.67 55.48 0.76 -25.17 16 20 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.30 -6.86 9.01 -39.20 -0.35 -7.21 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 28 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.46 6.46 -51.92 -0.34 0.12 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 7.18 -51.93 -0.37 0.22 16 37 H 0.05 0.65 7.95 -51.93 -0.41 0.23 16 38 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 39 H 0.39 5.61 7.66 -40.82 -0.31 5.30 16 40 H 0.10 1.64 6.72 -52.49 -0.35 1.28 16 41 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 42 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 2.80 5.64 -52.49 -0.30 2.50 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -31.05 350.35 -8.15 -39.19 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.13 Total: 6.49 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -1.72 Total: -24.65 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.44 Total: -36.93 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.05 -8.15 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302456549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.961 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds