Wall clock time and date at job start Mon Mar 30 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46735 * 2 1 4 4 C 1.52998 * 109.46972 * 120.00091 * 2 1 3 5 5 C 1.52994 * 109.47395 * 65.00171 * 4 2 1 6 6 H 1.08997 * 109.47252 * 304.99867 * 5 4 2 7 7 C 1.53005 * 109.47307 * 64.99820 * 5 4 2 8 8 C 1.53002 * 109.47289 * 184.99568 * 5 4 2 9 9 N 1.46497 * 109.47103 * 174.99790 * 8 5 4 10 10 C 1.39668 * 119.99969 * 180.02562 * 9 8 5 11 11 C 1.39011 * 120.04085 * 359.97438 * 10 9 8 12 12 C 1.38149 * 120.06218 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14500 * 359.72293 * 12 11 10 14 14 C 1.38918 * 120.07431 * 0.55384 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.72007 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31558 * 119.99943 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99837 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 90.00115 * 20 18 16 22 22 H 1.48508 * 109.46728 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.47044 * 329.99801 * 20 18 16 24 24 C 1.38757 * 119.94038 * 359.44745 * 14 13 12 25 25 H 1.08996 * 109.46988 * 299.99915 * 1 2 3 26 26 H 1.08997 * 109.47277 * 59.99877 * 1 2 3 27 27 H 1.09007 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46988 * 240.00084 * 2 1 3 29 29 H 1.09007 * 109.47111 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47338 * 300.00085 * 3 2 1 31 31 H 1.08996 * 109.47314 * 60.00284 * 3 2 1 32 32 H 1.09002 * 109.47275 * 304.99901 * 4 2 1 33 33 H 1.09001 * 109.46993 * 185.00102 * 4 2 1 34 34 H 1.09007 * 109.46865 * 300.00232 * 7 5 4 35 35 H 1.08997 * 109.46926 * 59.99848 * 7 5 4 36 36 H 1.09000 * 109.46948 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.46740 * 55.00403 * 8 5 4 38 38 H 1.08996 * 109.46959 * 295.00101 * 8 5 4 39 39 H 0.97005 * 120.00018 * 0.02562 * 9 8 5 40 40 H 1.07992 * 119.96556 * 0.02562 * 11 10 9 41 41 H 1.08004 * 119.92685 * 180.02562 * 12 11 10 42 42 H 1.07999 * 119.96177 * 180.29756 * 13 12 11 43 43 H 0.97001 * 120.00127 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.07612 * 180.29913 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.3450 -2.8708 0.0126 8 6 2.0355 -2.8888 2.4918 9 7 1.5428 -4.2684 2.4824 10 6 1.7868 -5.1046 3.5742 11 6 2.4977 -4.6288 4.6700 12 6 2.7398 -5.4556 5.7499 13 6 2.2717 -6.7557 5.7471 14 6 1.5656 -7.2390 4.6527 15 8 1.1110 -8.5182 4.6486 16 6 0.3316 -8.8874 3.6122 17 1 0.1621 -8.2038 2.7935 18 6 -0.2523 -10.1449 3.5975 19 7 -0.0462 -10.9776 4.5950 20 14 -1.3317 -10.6568 2.1614 21 1 -0.4951 -11.3059 1.1203 22 1 -2.3641 -11.6136 2.6345 23 1 -1.9938 -9.4577 1.5878 24 6 1.3205 -6.4114 3.5663 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0599 -2.3768 -0.9163 35 1 3.4239 -2.7955 0.1479 36 1 2.0563 -3.9209 -0.0312 37 1 1.6010 -2.3536 3.3361 38 1 3.1216 -2.8915 2.5833 39 1 1.0470 -4.6012 1.7179 40 1 2.8610 -3.6118 4.6770 41 1 3.2919 -5.0835 6.6003 42 1 2.4585 -7.3980 6.5950 43 1 -0.4544 -11.8574 4.5846 44 1 0.7676 -6.7835 2.7163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302456549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:40 Heat of formation + Delta-G solvation = -47.811079 kcal Electronic energy + Delta-G solvation = -21015.900256 eV Core-core repulsion = 17932.041765 eV Total energy + Delta-G solvation = -3083.858491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78164 -39.35449 -38.23996 -36.10414 -34.25987 -33.46163 -30.78589 -29.67550 -28.00511 -27.74487 -27.25574 -26.29953 -23.44661 -22.48010 -21.52929 -20.34194 -19.69750 -18.96631 -17.24021 -16.76117 -16.66236 -16.11984 -15.92563 -15.67517 -15.54249 -15.34901 -14.70296 -14.59276 -14.35539 -14.13235 -14.02651 -13.57485 -13.48226 -13.20531 -13.01232 -12.78841 -12.51861 -12.46929 -12.31509 -12.27459 -12.13234 -11.98489 -11.93860 -11.42904 -11.30647 -11.24698 -11.13174 -10.91894 -10.59090 -9.09442 -8.44913 -8.21180 -6.13278 0.77179 0.93144 1.34026 1.44617 1.51932 2.18811 2.58465 2.89998 3.27700 3.60349 3.73787 3.90351 3.98830 4.17748 4.22034 4.29528 4.40486 4.46220 4.60305 4.62323 4.72282 4.75225 4.76451 4.82152 4.84534 4.96975 5.01222 5.06659 5.08511 5.11873 5.16462 5.17538 5.18458 5.29223 5.34508 5.42316 5.48479 5.55737 5.61577 5.76207 5.81308 6.05240 6.12757 6.62292 6.88284 7.00422 7.83926 8.78832 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.003469 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.992357 B = 8070.224322 C = 9234.205506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.096 4.096 6 H 0.076 0.924 7 C -0.147 4.147 8 C 0.132 3.868 9 N -0.744 5.744 10 C 0.255 3.745 11 C -0.265 4.265 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.152 3.848 15 O -0.233 6.233 16 C -0.410 4.410 17 H 0.098 0.902 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.254 1.254 24 C -0.317 4.317 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.398 0.602 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.106 0.894 43 H 0.272 0.728 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 23.636 -10.205 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.115 4.115 6 H 0.094 0.906 7 C -0.204 4.204 8 C 0.009 3.991 9 N -0.374 5.374 10 C 0.151 3.849 11 C -0.288 4.288 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.341 4.341 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.232 0.768 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.388 23.469 -9.960 25.719 hybrid contribution -0.712 -1.022 -0.591 1.378 sum 2.675 22.447 -10.550 24.947 Atomic orbital electron populations 1.21912 0.95490 1.01633 1.01780 1.21141 0.95728 0.96388 0.98257 1.21830 1.01096 0.95578 1.01886 1.21580 1.01348 0.92688 0.98396 1.21340 1.00980 0.95591 0.93557 0.90576 1.21874 1.00555 0.99866 0.98120 1.21467 0.98681 0.80720 0.98276 1.44723 1.62448 1.11846 1.18341 1.17580 0.91011 0.88235 0.88117 1.20551 1.11176 1.01660 0.95384 1.20829 0.94934 0.90863 0.97836 1.20265 1.10951 0.98531 0.98643 1.19643 0.91971 0.84205 0.94101 1.83949 1.60225 1.23718 1.46003 1.21784 1.26727 1.01111 0.99039 0.88420 1.26591 0.99073 0.94715 1.01781 1.70193 1.44533 1.08216 1.33169 0.84594 0.77060 0.78810 0.75756 1.18777 1.19512 1.17768 1.20508 1.16350 0.95372 1.01912 0.92787 0.92541 0.92927 0.90922 0.92444 0.92491 0.92685 0.91502 0.91213 0.91317 0.92540 0.93793 0.92291 0.92271 0.76772 0.84169 0.83034 0.87567 0.91899 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.95 71.98 0.64 -1.24 16 2 C -0.10 -1.14 2.78 -10.79 -0.03 -1.17 16 3 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 4 C -0.10 -1.31 4.15 30.59 0.13 -1.18 16 5 C -0.10 -1.53 2.29 -10.79 -0.02 -1.55 16 6 H 0.08 1.28 6.34 -2.39 -0.02 1.26 16 7 C -0.15 -2.38 8.83 71.98 0.64 -1.74 16 8 C 0.13 2.72 4.30 86.38 0.37 3.09 16 9 N -0.74 -20.88 5.46 -339.48 -1.85 -22.73 16 10 C 0.26 9.39 6.65 38.20 0.25 9.64 16 11 C -0.26 -8.85 9.31 22.43 0.21 -8.64 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.70 16 13 C -0.26 -11.95 9.99 22.42 0.22 -11.73 16 14 C 0.15 8.01 6.64 22.56 0.15 8.16 16 15 O -0.23 -14.61 9.76 -22.82 -0.22 -14.84 16 16 C -0.41 -24.75 9.49 67.92 0.64 -24.11 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 19 N -0.92 -58.08 13.67 21.61 0.30 -57.79 16 20 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.32 -14.64 9.01 22.52 0.20 -14.44 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.71 6.46 -2.38 -0.02 0.70 16 28 H 0.07 0.87 6.34 -2.39 -0.02 0.86 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.95 6.46 -2.38 -0.02 0.93 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.04 0.83 7.18 -2.39 -0.02 0.81 16 37 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 38 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 39 H 0.40 10.70 7.66 -92.70 -0.71 9.99 16 40 H 0.14 3.69 6.72 -2.91 -0.02 3.67 16 41 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 Total: -1.00 -71.62 350.35 5.27 -66.35 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.27 Total: 30.48 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 4.76 Total: -47.44 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.56 Total: -80.52 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.62 5.27 -66.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302456549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.535 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds