Wall clock time and date at job start Mon Mar 30 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.80969 * 2 1 4 4 C 1.52972 * 109.79085 * 120.40440 * 2 1 3 5 5 C 1.50065 * 110.28884 * 168.92215 * 4 2 1 6 6 C 1.29443 * 124.07575 * 342.98046 * 5 4 2 7 7 C 1.50073 * 124.07366 * 0.48995 * 6 5 4 8 8 C 1.53025 * 110.14970 * 342.86898 * 7 6 5 9 9 H 1.08994 * 109.63779 * 289.54380 * 8 7 6 10 10 C 1.50694 * 109.64439 * 169.11687 * 8 7 6 11 11 O 1.21278 * 120.00560 * 274.95982 * 10 8 7 12 12 N 1.34782 * 119.99651 * 94.95393 * 10 8 7 13 13 C 1.46503 * 119.99933 * 185.43149 * 12 10 8 14 14 C 1.50704 * 109.47082 * 270.00413 * 13 12 10 15 15 H 1.07992 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99601 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00286 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47121 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47208 * 300.00321 * 18 16 14 21 21 H 1.48499 * 109.46954 * 59.99945 * 18 16 14 22 22 C 1.46497 * 119.99830 * 5.43645 * 12 10 8 23 23 C 1.53001 * 109.47060 * 265.53263 * 22 12 10 24 24 C 1.53002 * 117.49643 * 243.62360 * 23 22 12 25 25 C 1.52991 * 60.00011 * 252.51069 * 24 23 22 26 26 H 1.09006 * 109.46865 * 175.42914 * 1 2 3 27 27 H 1.08994 * 109.47736 * 295.43275 * 1 2 3 28 28 H 1.09005 * 109.47242 * 55.43293 * 1 2 3 29 29 H 1.09003 * 109.17976 * 48.73948 * 4 2 1 30 30 H 1.09001 * 109.39602 * 289.24541 * 4 2 1 31 31 H 1.07994 * 117.96387 * 163.00197 * 5 4 2 32 32 H 1.07991 * 117.96334 * 180.51031 * 6 5 4 33 33 H 1.08992 * 109.35719 * 222.65901 * 7 6 5 34 34 H 1.09006 * 109.35472 * 103.07800 * 7 6 5 35 35 H 1.08997 * 109.47026 * 149.99998 * 13 12 10 36 36 H 1.09003 * 109.46896 * 30.00502 * 13 12 10 37 37 H 0.97005 * 119.99834 * 359.97438 * 17 16 14 38 38 H 1.08999 * 109.47224 * 25.53629 * 22 12 10 39 39 H 1.09003 * 109.46833 * 145.53360 * 22 12 10 40 40 H 1.08995 * 115.54738 * 29.33017 * 23 22 12 41 41 H 1.09005 * 117.50312 * 0.02562 * 24 23 22 42 42 H 1.08999 * 117.49783 * 145.01852 * 24 23 22 43 43 H 1.09002 * 117.50074 * 252.50972 * 25 24 23 44 44 H 1.09005 * 117.50096 * 107.48962 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0480 -0.7285 1.2414 5 6 3.5239 -0.9728 1.1235 6 6 4.1831 -0.9081 0.0114 7 6 3.5654 -0.5693 -1.3137 8 6 2.0457 -0.7339 -1.2444 9 1 1.7946 -1.7923 -1.1758 10 6 1.4152 -0.1426 -2.4788 11 8 1.1655 1.0433 -2.5235 12 7 1.1289 -0.9318 -3.5332 13 6 0.6271 -0.3403 -4.7760 14 6 -0.8782 -0.2813 -4.7323 15 1 -1.4080 -0.6482 -3.8658 16 6 -1.5788 0.2400 -5.7992 17 7 -0.9336 0.6863 -6.8547 18 14 -3.4447 0.3124 -5.7455 19 1 -3.9532 0.9121 -7.0052 20 1 -3.9892 -1.0609 -5.5952 21 1 -3.8747 1.1442 -4.5929 22 6 1.3194 -2.3811 -3.4364 23 6 2.6992 -2.7518 -3.9840 24 6 2.7499 -3.6408 -5.2282 25 6 3.1380 -4.2125 -3.8632 26 1 -0.3633 -1.0245 -0.0819 27 1 -0.3634 0.4413 0.9280 28 1 -0.3634 0.5831 -0.8463 29 1 1.5304 -1.6828 1.3386 30 1 1.8517 -0.1217 2.1254 31 1 4.0700 -1.2183 2.0222 32 1 5.2435 -1.1108 0.0387 33 1 3.9662 -1.2333 -2.0795 34 1 3.8058 0.4623 -1.5712 35 1 0.9424 -0.9507 -5.6222 36 1 1.0271 0.6677 -4.8861 37 1 0.0353 0.6490 -6.8825 38 1 1.2480 -2.6881 -2.3930 39 1 0.5495 -2.8884 -4.0179 40 1 3.4672 -1.9853 -3.8810 41 1 1.8004 -3.9613 -5.6569 42 1 3.5515 -3.4592 -5.9441 43 1 4.1950 -4.4070 -3.6810 44 1 2.4438 -4.9094 -3.3935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342471574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:09 Heat of formation + Delta-G solvation = -13.113297 kcal Electronic energy + Delta-G solvation = -22749.316998 eV Core-core repulsion = 19666.963115 eV Total energy + Delta-G solvation = -3082.353882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09046 -37.81321 -36.99738 -34.50313 -32.76542 -32.56160 -30.94652 -27.64929 -26.57015 -25.82804 -23.92171 -22.54495 -22.21282 -21.17812 -20.55978 -18.51837 -17.97689 -16.87058 -16.64243 -15.75868 -15.26353 -15.05270 -14.48718 -14.20736 -13.86927 -13.68020 -13.45952 -13.13296 -12.79118 -12.45383 -12.36609 -12.22750 -11.95175 -11.87880 -11.47716 -11.41147 -11.38831 -11.29231 -10.95318 -10.62278 -10.48775 -10.40549 -10.24862 -10.18828 -10.08105 -9.69926 -9.08700 -8.99185 -8.76659 -8.35107 -7.60162 -6.34757 -4.06072 2.26991 3.38150 3.44346 3.48693 3.65512 3.75952 4.00880 4.56044 4.65580 4.77227 4.84519 4.94124 5.02640 5.10406 5.28235 5.30360 5.35213 5.40246 5.43710 5.58096 5.58924 5.65655 5.70243 5.78521 5.85583 5.89511 5.94060 5.98925 6.02788 6.07405 6.12312 6.22553 6.23029 6.44025 6.53392 6.58068 6.71633 6.88924 6.92899 7.16152 7.46121 8.08652 8.34995 8.47607 8.81689 9.08454 9.63330 11.02450 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.006316 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.784515 B = 4432.015793 C = 5637.101735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 H 0.079 0.921 4 C -0.086 4.086 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.106 4.106 9 H 0.089 0.911 10 C 0.514 3.486 11 O -0.537 6.537 12 N -0.590 5.590 13 C 0.239 3.761 14 C -0.602 4.602 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 1.069 2.931 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.141 3.859 23 C -0.167 4.167 24 C -0.175 4.175 25 C -0.179 4.179 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -9.046 12.743 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.123 4.123 5 C -0.176 4.176 6 C -0.167 4.167 7 C -0.116 4.116 8 C -0.127 4.127 9 H 0.107 0.893 10 C 0.301 3.699 11 O -0.415 6.415 12 N -0.320 5.320 13 C 0.119 3.881 14 C -0.641 4.641 15 H 0.068 0.932 16 C -0.185 4.185 17 N -0.547 5.547 18 Si 0.898 3.102 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.214 1.214 22 C 0.017 3.983 23 C -0.186 4.186 24 C -0.212 4.212 25 C -0.217 4.217 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.879 -7.936 11.817 16.270 hybrid contribution 1.508 -0.654 0.849 1.850 sum 9.387 -8.589 12.666 17.953 Atomic orbital electron populations 1.21893 0.94557 1.01867 1.02648 1.20975 0.96052 0.99712 0.92293 0.90259 1.20534 0.92990 1.00581 0.98174 1.22049 0.96331 1.01580 0.97625 1.22001 0.99383 1.00917 0.94384 1.20364 0.92958 1.02494 0.95808 1.21521 0.95820 1.01204 0.94146 0.89306 1.20251 0.78814 0.86886 0.83989 1.90655 1.53355 1.15985 1.81462 1.48019 1.63347 1.05685 1.14967 1.19287 0.94994 0.93720 0.80108 1.22230 0.91325 1.45232 1.05289 0.93156 1.25768 1.07008 0.93304 0.92387 1.70802 1.10314 1.43807 1.29759 0.83536 0.74288 0.76354 0.76055 1.20705 1.21516 1.21433 1.21077 0.94075 0.82531 1.00661 1.22922 0.99601 0.93409 1.02696 1.23007 1.03263 1.04014 0.90962 1.22910 1.01482 0.96214 1.01091 0.93175 0.92890 0.90799 0.90951 0.91009 0.88134 0.87941 0.90618 0.90330 0.96037 0.95269 0.92288 0.90780 0.90106 0.87908 0.88491 0.89165 0.89124 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.71 37.16 0.32 -2.05 16 2 C -0.07 -1.05 2.01 -90.43 -0.18 -1.23 16 3 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 4 C -0.09 -0.97 5.44 -28.20 -0.15 -1.13 16 5 C -0.16 -1.70 9.81 -35.90 -0.35 -2.06 16 6 C -0.15 -1.69 9.81 -35.90 -0.35 -2.04 16 7 C -0.08 -1.07 5.43 -28.17 -0.15 -1.22 16 8 C -0.11 -1.63 1.75 -91.56 -0.16 -1.79 16 9 H 0.09 1.26 5.59 -51.93 -0.29 0.97 16 10 C 0.51 10.65 5.69 -10.99 -0.06 10.58 16 11 O -0.54 -13.53 14.96 5.56 0.08 -13.44 16 12 N -0.59 -12.47 2.46 -175.06 -0.43 -12.90 16 13 C 0.24 6.22 4.45 -5.19 -0.02 6.20 16 14 C -0.60 -17.30 9.39 -34.44 -0.32 -17.62 16 15 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 16 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 17 N -0.91 -27.96 13.65 55.43 0.76 -27.20 16 18 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.14 2.34 5.52 -4.04 -0.02 2.31 16 23 C -0.17 -2.36 5.81 -90.62 -0.53 -2.89 16 24 C -0.18 -2.32 10.18 -26.73 -0.27 -2.59 16 25 C -0.18 -2.01 10.25 -26.74 -0.27 -2.29 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.45 6.49 -51.93 -0.34 1.11 16 29 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.08 0.96 6.55 -51.93 -0.34 0.62 16 34 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.02 0.57 7.94 -51.93 -0.41 0.15 16 36 H 0.03 0.85 7.37 -51.93 -0.38 0.47 16 37 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 38 H 0.07 1.07 5.67 -51.93 -0.29 0.77 16 39 H 0.08 1.42 7.84 -51.93 -0.41 1.02 16 40 H 0.10 1.51 6.78 -51.93 -0.35 1.16 16 41 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -32.66 348.53 -9.43 -42.08 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.38 Total: 2.77 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.63 Total: -17.33 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.33 Total: -40.10 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.66 -9.43 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342471574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.971 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds