Wall clock time and date at job start Mon Mar 30 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99897 * 2 1 4 4 C 1.38731 * 120.05721 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94786 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.05286 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94361 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46656 * 340.00142 * 7 6 5 9 9 C 1.52996 * 109.47193 * 99.99985 * 7 6 5 10 10 N 1.46899 * 109.46966 * 220.00592 * 7 6 5 11 11 C 1.46900 * 110.99873 * 154.99983 * 10 7 6 12 12 C 1.52995 * 109.47179 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47104 * 299.99935 * 12 11 10 14 14 C 1.52994 * 109.47239 * 59.99944 * 12 11 10 15 15 C 1.50700 * 109.47571 * 180.02562 * 12 11 10 16 16 H 1.08007 * 119.99452 * 1.23246 * 15 12 11 17 17 C 1.37877 * 120.00462 * 181.24747 * 15 12 11 18 18 N 1.31511 * 120.00009 * 194.10940 * 17 15 12 19 19 Si 1.86794 * 119.99960 * 14.09997 * 17 15 12 20 20 H 1.48503 * 109.47128 * 84.53790 * 19 17 15 21 21 H 1.48498 * 109.47473 * 204.53944 * 19 17 15 22 22 H 1.48500 * 109.47517 * 324.54247 * 19 17 15 23 23 C 1.38265 * 120.11025 * 0.27971 * 6 5 4 24 24 C 1.38146 * 120.05468 * 359.44523 * 23 6 5 25 25 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46947 * 300.00160 * 1 2 3 27 27 H 1.09001 * 109.47170 * 59.99984 * 1 2 3 28 28 H 1.07997 * 120.02673 * 359.95164 * 4 3 2 29 29 H 1.07999 * 119.97426 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47424 * 180.02562 * 9 7 6 31 31 H 1.09005 * 109.47473 * 300.00151 * 9 7 6 32 32 H 1.09002 * 109.47054 * 59.99947 * 9 7 6 33 33 H 1.00899 * 110.99297 * 278.94585 * 10 7 6 34 34 H 1.09003 * 109.47154 * 299.99741 * 11 10 7 35 35 H 1.09001 * 109.47173 * 59.99602 * 11 10 7 36 36 H 1.09001 * 109.47436 * 69.51736 * 13 12 11 37 37 H 1.09004 * 109.47093 * 189.51646 * 13 12 11 38 38 H 1.08994 * 109.47539 * 309.51469 * 13 12 11 39 39 H 1.08997 * 109.47261 * 60.00002 * 14 12 11 40 40 H 1.08999 * 109.47672 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47502 * 300.00279 * 14 12 11 42 42 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.96490 * 179.70363 * 23 6 5 44 44 H 1.08000 * 120.02542 * 180.27806 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0115 4.9041 0.3484 9 6 3.9938 5.5858 -1.4237 10 7 3.2633 5.9371 0.8872 11 6 4.1512 6.9973 1.3829 12 6 3.3645 7.9322 2.3037 13 6 2.2065 8.5594 1.5250 14 6 2.8112 7.1358 3.4870 15 6 4.2751 9.0203 2.8117 16 1 5.3063 9.0542 2.4924 17 6 3.7919 9.9722 3.6843 18 7 4.4838 11.0671 3.9119 19 14 2.1544 9.7066 4.5430 20 1 2.3625 8.8855 5.7627 21 1 1.5762 11.0204 4.9235 22 1 1.2227 9.0027 3.6256 23 6 1.9210 3.6048 0.0042 24 6 1.2915 2.3751 -0.0010 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 4.0209 0.3800 -0.0002 29 1 5.1345 2.5751 -0.0019 30 1 4.4891 6.5568 -1.4247 31 1 4.5301 4.9042 -2.0841 32 1 2.9683 5.7002 -1.7749 33 1 2.4562 6.3282 0.4249 34 1 4.9764 6.5505 1.9373 35 1 4.5451 7.5650 0.5398 36 1 1.4618 7.7951 1.3028 37 1 1.7505 9.3477 2.1241 38 1 2.5820 8.9825 0.5933 39 1 3.6362 6.6889 4.0418 40 1 2.2504 7.8017 4.1428 41 1 2.1524 6.3491 3.1193 42 1 4.1438 11.7370 4.5255 43 1 1.3342 4.5115 0.0086 44 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414159606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:19 Heat of formation + Delta-G solvation = -2.447927 kcal Electronic energy + Delta-G solvation = -21774.433612 eV Core-core repulsion = 18692.542215 eV Total energy + Delta-G solvation = -3081.891397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.21211 -38.36165 -36.95819 -34.73346 -31.84703 -31.06953 -30.18680 -28.55582 -27.27503 -26.18734 -25.19842 -24.34192 -23.25104 -22.17036 -20.34200 -18.81809 -18.21372 -16.30762 -16.16150 -15.86433 -15.76043 -15.10328 -14.77160 -14.38719 -14.23150 -13.63676 -13.45097 -13.13630 -13.08054 -12.77082 -12.54111 -12.51643 -12.33057 -12.08530 -11.93971 -11.83048 -11.50672 -11.06876 -10.97198 -10.85906 -10.70010 -10.27547 -10.04318 -9.95456 -9.84471 -8.97065 -8.95257 -8.54002 -8.35780 -8.08067 -7.83376 -6.06995 -4.02506 1.36970 1.46794 3.16176 3.33949 3.43230 3.46628 3.77547 4.45511 4.60625 4.74144 4.86580 4.93681 4.97178 4.98829 5.23402 5.26405 5.28898 5.37908 5.42651 5.50828 5.63889 5.82301 5.87870 6.00349 6.05425 6.15470 6.18779 6.29357 6.32604 6.41282 6.55712 6.64293 6.69269 6.71408 6.77107 6.86507 6.94633 7.04961 7.32239 7.38120 7.54946 7.60428 7.81873 7.96061 8.56373 8.97877 9.59430 11.06457 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.003881 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.570399 B = 7213.281617 C = 7760.261572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.153 4.153 5 C -0.079 4.079 6 C -0.092 4.092 7 C 0.122 3.878 8 H 0.083 0.917 9 C -0.176 4.176 10 N -0.682 5.682 11 C 0.085 3.915 12 C 0.041 3.959 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.512 4.512 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.287 1.287 21 H -0.309 1.309 22 H -0.249 1.249 23 C -0.058 4.058 24 C -0.208 4.208 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.336 0.664 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.124 0.876 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 -18.760 -10.370 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.171 4.171 5 C -0.097 4.097 6 C -0.093 4.093 7 C 0.011 3.989 8 H 0.102 0.898 9 C -0.235 4.235 10 N -0.313 5.313 11 C -0.043 4.043 12 C 0.040 3.960 13 C -0.200 4.200 14 C -0.191 4.191 15 C -0.550 4.550 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.215 1.215 21 H -0.238 1.238 22 H -0.174 1.174 23 C -0.076 4.076 24 C -0.227 4.227 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.450 -19.157 -9.714 22.427 hybrid contribution -0.991 0.694 -0.112 1.215 sum -7.441 -18.463 -9.826 22.199 Atomic orbital electron populations 1.23013 0.78679 1.03599 1.01372 1.86036 1.21167 1.27293 1.89100 1.18999 0.92375 0.83965 0.97726 1.20322 0.91273 0.98429 1.07108 1.20820 0.99718 0.90988 0.98220 1.19808 0.93617 0.94639 1.01232 1.20397 0.97405 0.89831 0.91221 0.89840 1.22481 1.02059 1.01416 0.97538 1.60724 1.10097 1.20937 1.39550 1.21983 0.94887 0.90526 0.96912 1.18459 0.93116 0.92722 0.91736 1.22291 0.98191 0.99532 1.00024 1.22154 0.99608 0.98552 0.98800 1.20874 0.97883 1.08810 1.27452 0.91103 1.24980 0.97059 0.94290 0.96568 1.69965 1.39765 1.07726 1.36048 0.87249 0.85448 0.75039 0.80105 1.21530 1.23819 1.17450 1.20727 0.94214 0.96710 0.95943 1.21205 0.99767 0.92448 1.09276 0.88521 0.92665 0.92798 0.85599 0.85562 0.92037 0.92408 0.92608 0.84493 0.91799 0.95822 0.95520 0.92836 0.94216 0.93659 0.95272 0.93810 0.92766 0.85803 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.67 10.50 -19.42 -0.20 -3.87 16 3 C 0.11 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 5 C -0.08 -0.94 9.66 -39.60 -0.38 -1.32 16 6 C -0.09 -1.19 4.96 -104.60 -0.52 -1.71 16 7 C 0.12 1.64 2.79 -68.87 -0.19 1.45 16 8 H 0.08 1.14 7.66 -51.93 -0.40 0.74 16 9 C -0.18 -2.11 9.14 37.16 0.34 -1.77 16 10 N -0.68 -10.83 4.91 -107.95 -0.53 -11.36 16 11 C 0.09 1.63 4.37 -3.83 -0.02 1.61 16 12 C 0.04 0.92 0.57 -155.67 -0.09 0.83 16 13 C -0.14 -3.01 7.24 37.16 0.27 -2.74 16 14 C -0.13 -2.96 7.54 37.15 0.28 -2.68 16 15 C -0.51 -14.06 8.62 -34.44 -0.30 -14.36 16 16 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 17 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 18 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 19 Si 0.89 22.15 22.79 -169.99 -3.87 18.27 16 20 H -0.29 -7.19 7.10 56.52 0.40 -6.79 16 21 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 22 H -0.25 -5.73 4.65 56.52 0.26 -5.47 16 23 C -0.06 -0.73 9.32 -39.61 -0.37 -1.10 16 24 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.39 7.66 -51.92 -0.40 -0.01 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.27 8.03 -52.49 -0.42 0.85 16 30 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.34 5.13 6.08 -39.29 -0.24 4.89 16 34 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 36 H 0.03 0.48 7.06 -51.93 -0.37 0.12 16 37 H 0.05 1.21 4.30 -51.93 -0.22 0.99 16 38 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.67 2.26 -51.93 -0.12 0.56 16 41 H 0.04 0.87 7.60 -51.93 -0.39 0.48 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.12 1.50 7.23 -52.49 -0.38 1.12 16 44 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -30.62 335.88 -6.95 -37.57 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.09 Total: 3.47 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.09 Total: -22.49 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.24 Total: -38.02 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -3.87 Total: 18.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.62 -6.95 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.124 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds