Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99877 * 2 1 4 4 C 1.53004 * 109.47376 * 124.99896 * 3 2 1 5 5 C 1.52997 * 109.47236 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 3 7 7 N 1.46899 * 109.47254 * 64.99771 * 5 4 3 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 5 4 9 9 C 1.52994 * 109.47637 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46835 * 300.00214 * 9 8 7 11 11 C 1.53003 * 109.47035 * 59.99612 * 9 8 7 12 12 C 1.50698 * 109.47254 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00321 * 359.97438 * 12 9 8 14 14 C 1.37883 * 119.99675 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00200 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 119.99561 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47357 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47172 * 119.99818 * 16 14 12 19 19 H 1.48495 * 109.47175 * 239.99565 * 16 14 12 20 20 C 1.50699 * 109.47078 * 184.99974 * 5 4 3 21 21 C 1.34510 * 125.79218 * 99.99908 * 20 5 4 22 22 C 1.41379 * 106.84350 * 180.02562 * 21 20 5 23 23 C 1.34510 * 106.84213 * 0.02562 * 22 21 20 24 24 O 1.34308 * 125.78641 * 279.69418 * 20 5 4 25 25 H 1.08003 * 119.99713 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00462 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47476 * 4.99775 * 3 2 1 29 29 H 1.09004 * 109.47360 * 244.99731 * 3 2 1 30 30 H 1.09001 * 109.46917 * 59.99537 * 4 3 2 31 31 H 1.09004 * 109.46741 * 300.00214 * 4 3 2 32 32 H 1.00898 * 111.00393 * 328.95803 * 7 5 4 33 33 H 1.09006 * 109.46948 * 300.00869 * 8 7 5 34 34 H 1.09006 * 109.47033 * 59.99701 * 8 7 5 35 35 H 1.09004 * 109.47480 * 59.99999 * 10 9 8 36 36 H 1.09003 * 109.47294 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47454 * 299.99759 * 10 9 8 38 38 H 1.09008 * 109.46413 * 60.00548 * 11 9 8 39 39 H 1.08995 * 109.46836 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47281 * 300.00752 * 11 9 8 41 41 H 0.96999 * 120.00222 * 180.02562 * 15 14 12 42 42 H 1.08003 * 126.58003 * 0.03328 * 21 20 5 43 43 H 1.08005 * 126.58204 * 179.97438 * 22 21 20 44 44 H 1.08002 * 125.79136 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1820 6 1 4.2855 2.7978 0.2163 7 7 2.8627 3.7641 1.4227 8 6 3.3788 5.0220 0.8666 9 6 2.3784 6.1476 1.1368 10 6 1.0399 5.8096 0.4773 11 6 2.1789 6.3011 2.6460 12 6 2.9076 7.4379 0.5657 13 1 3.8622 7.4536 0.0608 14 6 2.1735 8.5986 0.6887 15 7 1.0114 8.5795 1.3040 16 14 2.8298 10.1980 -0.0186 17 1 4.1487 9.9532 -0.6558 18 1 1.8782 10.7179 -1.0333 19 1 2.9845 11.1946 1.0713 20 6 4.8416 2.6370 2.2704 21 6 6.1526 2.3897 2.0994 22 6 6.7544 2.4694 3.3763 23 6 5.7750 2.7601 4.2513 24 8 4.6196 2.8672 3.5748 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 3.7399 0.5066 1.0921 31 1 2.4771 1.2357 2.1130 32 1 1.9493 3.5519 1.0502 33 1 4.3322 5.2630 1.3367 34 1 3.5213 4.9125 -0.2086 35 1 0.6569 4.8762 0.8900 36 1 0.3270 6.6113 0.6702 37 1 1.1819 5.7001 -0.5978 38 1 3.1326 6.5420 3.1159 39 1 1.4666 7.1033 2.8386 40 1 1.7960 5.3678 3.0587 41 1 0.4948 9.3960 1.3901 42 1 6.6502 2.1721 1.1659 43 1 7.7998 2.3238 3.6054 44 1 5.8979 2.8912 5.3162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414162148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = 22.888855 kcal Electronic energy + Delta-G solvation = -22138.905931 eV Core-core repulsion = 19058.113219 eV Total energy + Delta-G solvation = -3080.792712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.22157 -37.80508 -35.85714 -34.07984 -32.64442 -31.64747 -29.63423 -29.20445 -25.55282 -25.52882 -25.15875 -23.43506 -21.86028 -21.37544 -19.85919 -19.74238 -18.43984 -17.03551 -16.04374 -15.64996 -15.59032 -15.10107 -14.80187 -14.49744 -14.02209 -13.52575 -13.32420 -12.96844 -12.62886 -12.52519 -12.45761 -12.14018 -11.95189 -11.63383 -11.56162 -11.10687 -11.07691 -10.95155 -10.75496 -10.56311 -10.51873 -10.17499 -10.03300 -9.62744 -9.40012 -9.36944 -9.06740 -8.60283 -8.27798 -8.15728 -7.80551 -5.89538 -3.99630 2.05105 2.24193 2.86436 3.31431 3.35893 3.39825 3.43539 4.42974 4.56815 4.78121 4.86852 5.04139 5.18103 5.28533 5.29686 5.36095 5.39935 5.48065 5.60032 5.73835 5.85426 6.02670 6.04898 6.14441 6.22285 6.33412 6.36724 6.42062 6.57528 6.72088 6.72571 6.73833 6.89762 7.08035 7.18563 7.38159 7.44483 7.54635 7.73347 7.77811 7.85335 7.94235 8.23076 8.36505 8.57822 9.01823 9.65262 11.11049 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005422 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.102261 B = 5162.795004 C = 6617.755140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.100 4.100 4 C -0.113 4.113 5 C 0.159 3.841 6 H 0.069 0.931 7 N -0.677 5.677 8 C 0.076 3.924 9 C 0.070 3.930 10 C -0.132 4.132 11 C -0.118 4.118 12 C -0.505 4.505 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.028 3.972 21 C -0.230 4.230 22 C -0.218 4.218 23 C -0.052 4.052 24 O -0.150 6.150 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.344 0.656 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.084 0.916 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.257 0.743 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -15.773 0.568 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.168 4.168 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.049 3.951 6 H 0.087 0.913 7 N -0.312 5.312 8 C -0.052 4.052 9 C 0.069 3.931 10 C -0.190 4.190 11 C -0.175 4.175 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.024 4.024 21 C -0.250 4.250 22 C -0.237 4.237 23 C -0.120 4.120 24 O -0.044 6.044 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.084 -15.439 1.364 16.028 hybrid contribution 0.674 0.789 -1.306 1.668 sum 4.758 -14.650 0.058 15.403 Atomic orbital electron populations 1.23892 0.96027 1.01920 1.01346 1.22886 0.95994 0.98209 0.99758 1.20847 0.98478 0.95850 0.98547 1.21713 0.98002 0.96017 0.99333 1.20044 0.91124 0.92537 0.91424 0.91314 1.60577 1.04720 1.01824 1.64095 1.22221 0.99565 0.88740 0.94691 1.18084 0.90624 0.90809 0.93572 1.21840 1.01085 0.98948 0.97118 1.21620 0.99820 0.99499 0.96591 1.21139 1.04611 0.92752 1.35856 0.92999 1.24878 0.94917 0.98573 0.95189 1.69843 1.12452 1.27251 1.42798 0.86614 0.78941 0.84050 0.78817 1.19966 1.21168 1.21124 1.22526 0.95162 1.01784 0.82942 1.21487 0.93456 1.11075 0.98958 1.21693 1.00178 1.08779 0.93031 1.23992 0.83443 1.06327 0.98284 1.84138 1.33679 1.67903 1.18718 0.88731 0.88286 0.87603 0.90820 0.90914 0.91155 0.90462 0.83319 0.92598 0.96686 0.97160 0.89770 0.96178 0.96419 0.90807 0.96059 0.93268 0.84140 0.84092 0.78728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 14.32 29.02 0.42 -1.54 16 2 C -0.15 -1.54 9.52 -36.02 -0.34 -1.88 16 3 C -0.10 -1.12 5.49 -27.88 -0.15 -1.28 16 4 C -0.11 -1.37 4.77 -26.73 -0.13 -1.50 16 5 C 0.16 2.37 2.50 -68.87 -0.17 2.20 16 6 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 7 N -0.68 -12.09 5.50 -107.95 -0.59 -12.68 16 8 C 0.08 1.60 4.38 -3.83 -0.02 1.59 16 9 C 0.07 1.69 0.57 -155.66 -0.09 1.61 16 10 C -0.13 -3.10 7.92 37.16 0.29 -2.80 16 11 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 12 C -0.50 -13.70 8.01 -34.44 -0.28 -13.98 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 15 N -0.88 -24.63 9.35 55.43 0.52 -24.11 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.03 0.45 5.92 -35.63 -0.21 0.24 16 21 C -0.23 -3.34 10.80 -39.71 -0.43 -3.77 16 22 C -0.22 -2.92 10.91 -39.71 -0.43 -3.35 16 23 C -0.05 -0.72 12.09 29.41 0.36 -0.36 16 24 O -0.15 -2.56 10.64 5.67 0.06 -2.50 16 25 H 0.09 0.81 8.06 -52.48 -0.42 0.38 16 26 H 0.10 1.02 7.84 -52.48 -0.41 0.61 16 27 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.07 0.91 6.08 -51.93 -0.32 0.60 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.34 5.90 4.51 -39.29 -0.18 5.72 16 33 H 0.06 1.26 8.00 -51.93 -0.42 0.85 16 34 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 35 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 36 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.07 2.01 6.07 -51.93 -0.32 1.69 16 40 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 42 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -28.98 352.43 -7.98 -36.96 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.28 Total: 6.54 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -0.98 Total: -25.78 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.08 Total: -36.79 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.06 Total: -2.50 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.98 -7.98 -36.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.849 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds