Wall clock time and date at job start Mon Mar 30 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99877 * 2 1 4 4 C 1.53004 * 109.47376 * 124.99896 * 3 2 1 5 5 C 1.52997 * 109.47236 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 3 7 7 N 1.46899 * 109.47254 * 64.99771 * 5 4 3 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 5 4 9 9 C 1.52994 * 109.47637 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46835 * 300.00214 * 9 8 7 11 11 C 1.53003 * 109.47035 * 59.99612 * 9 8 7 12 12 C 1.50698 * 109.47254 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00321 * 359.97438 * 12 9 8 14 14 C 1.37883 * 119.99675 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00200 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 119.99561 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47357 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47172 * 119.99818 * 16 14 12 19 19 H 1.48495 * 109.47175 * 239.99565 * 16 14 12 20 20 C 1.50699 * 109.47078 * 184.99974 * 5 4 3 21 21 C 1.34510 * 125.79218 * 99.99908 * 20 5 4 22 22 C 1.41379 * 106.84350 * 180.02562 * 21 20 5 23 23 C 1.34510 * 106.84213 * 0.02562 * 22 21 20 24 24 O 1.34308 * 125.78641 * 279.69418 * 20 5 4 25 25 H 1.08003 * 119.99713 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00462 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47476 * 4.99775 * 3 2 1 29 29 H 1.09004 * 109.47360 * 244.99731 * 3 2 1 30 30 H 1.09001 * 109.46917 * 59.99537 * 4 3 2 31 31 H 1.09004 * 109.46741 * 300.00214 * 4 3 2 32 32 H 1.00898 * 111.00393 * 328.95803 * 7 5 4 33 33 H 1.09006 * 109.46948 * 300.00869 * 8 7 5 34 34 H 1.09006 * 109.47033 * 59.99701 * 8 7 5 35 35 H 1.09004 * 109.47480 * 59.99999 * 10 9 8 36 36 H 1.09003 * 109.47294 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47454 * 299.99759 * 10 9 8 38 38 H 1.09008 * 109.46413 * 60.00548 * 11 9 8 39 39 H 1.08995 * 109.46836 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47281 * 300.00752 * 11 9 8 41 41 H 0.96999 * 120.00222 * 180.02562 * 15 14 12 42 42 H 1.08003 * 126.58003 * 0.03328 * 21 20 5 43 43 H 1.08005 * 126.58204 * 179.97438 * 22 21 20 44 44 H 1.08002 * 125.79136 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1820 6 1 4.2855 2.7978 0.2163 7 7 2.8627 3.7641 1.4227 8 6 3.3788 5.0220 0.8666 9 6 2.3784 6.1476 1.1368 10 6 1.0399 5.8096 0.4773 11 6 2.1789 6.3011 2.6460 12 6 2.9076 7.4379 0.5657 13 1 3.8622 7.4536 0.0608 14 6 2.1735 8.5986 0.6887 15 7 1.0114 8.5795 1.3040 16 14 2.8298 10.1980 -0.0186 17 1 4.1487 9.9532 -0.6558 18 1 1.8782 10.7179 -1.0333 19 1 2.9845 11.1946 1.0713 20 6 4.8416 2.6370 2.2704 21 6 6.1526 2.3897 2.0994 22 6 6.7544 2.4694 3.3763 23 6 5.7750 2.7601 4.2513 24 8 4.6196 2.8672 3.5748 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 3.7399 0.5066 1.0921 31 1 2.4771 1.2357 2.1130 32 1 1.9493 3.5519 1.0502 33 1 4.3322 5.2630 1.3367 34 1 3.5213 4.9125 -0.2086 35 1 0.6569 4.8762 0.8900 36 1 0.3270 6.6113 0.6702 37 1 1.1819 5.7001 -0.5978 38 1 3.1326 6.5420 3.1159 39 1 1.4666 7.1033 2.8386 40 1 1.7960 5.3678 3.0587 41 1 0.4948 9.3960 1.3901 42 1 6.6502 2.1721 1.1659 43 1 7.7998 2.3238 3.6054 44 1 5.8979 2.8912 5.3162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414162148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:28 Heat of formation + Delta-G solvation = 8.117803 kcal Electronic energy + Delta-G solvation = -22139.546452 eV Core-core repulsion = 19058.113219 eV Total energy + Delta-G solvation = -3081.433233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.34039 -39.21328 -37.32573 -35.30797 -33.83117 -33.34606 -31.06524 -30.26868 -27.50932 -27.26907 -26.69783 -25.01671 -22.88043 -22.48092 -20.91912 -20.65532 -20.32117 -18.20534 -17.81449 -17.10972 -16.65899 -16.59823 -16.16778 -15.89456 -15.27833 -14.84925 -14.58948 -14.43475 -14.15248 -13.80704 -13.59158 -13.55682 -13.24356 -13.14620 -12.98072 -12.76675 -12.60299 -12.49373 -12.34995 -12.14975 -12.08031 -11.82355 -11.66029 -11.33889 -10.94331 -10.71565 -10.60528 -10.35222 -10.19235 -9.27889 -9.25000 -7.97102 -6.13864 0.94692 1.40385 1.43727 1.45277 1.53142 1.80141 2.30458 2.46111 3.25002 3.27977 3.78906 3.86159 4.08419 4.18524 4.27933 4.36653 4.44484 4.51336 4.54146 4.57501 4.65393 4.81712 4.87546 4.98117 5.02383 5.03163 5.08843 5.15858 5.16430 5.26002 5.30586 5.32481 5.41771 5.52481 5.69156 5.70676 5.76282 5.78941 5.94631 6.08937 6.20931 6.32590 6.45560 6.49185 6.62148 6.95194 7.53624 9.01373 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005422 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.102261 B = 5162.795004 C = 6617.755140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.097 4.097 4 C -0.100 4.100 5 C 0.160 3.840 6 H 0.075 0.925 7 N -0.682 5.682 8 C 0.095 3.905 9 C 0.061 3.939 10 C -0.120 4.120 11 C -0.102 4.102 12 C -0.525 4.525 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.284 1.284 20 C -0.001 4.001 21 C -0.233 4.233 22 C -0.223 4.223 23 C -0.061 4.061 24 O -0.180 6.180 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.348 0.652 33 H 0.036 0.964 34 H 0.016 0.984 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.003 0.997 39 H 0.049 0.951 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -17.058 0.213 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.173 4.173 3 C -0.135 4.135 4 C -0.138 4.138 5 C 0.050 3.950 6 H 0.093 0.907 7 N -0.317 5.317 8 C -0.034 4.034 9 C 0.060 3.940 10 C -0.178 4.178 11 C -0.159 4.159 12 C -0.564 4.564 13 H 0.061 0.939 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.052 4.052 21 C -0.252 4.252 22 C -0.242 4.242 23 C -0.128 4.128 24 O -0.076 6.076 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.022 0.978 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.175 0.825 43 H 0.185 0.815 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.974 -16.738 1.005 17.491 hybrid contribution 0.434 1.159 -1.144 1.685 sum 5.408 -15.580 -0.140 16.492 Atomic orbital electron populations 1.24035 0.96190 1.02388 1.01013 1.22958 0.96094 0.98243 1.00005 1.20811 0.98130 0.96103 0.98438 1.21613 0.98061 0.94997 0.99131 1.20149 0.90732 0.92533 0.91580 0.90687 1.60439 1.05501 1.01713 1.64039 1.21806 0.97631 0.89354 0.94580 1.18127 0.91831 0.91213 0.92781 1.21652 0.99886 0.98971 0.97251 1.21436 0.98224 0.98952 0.97331 1.21434 1.04422 0.94359 1.36145 0.93886 1.25523 0.95198 1.01295 0.95582 1.69969 1.13126 1.27834 1.43302 0.85728 0.78442 0.80600 0.78152 1.19732 1.20637 1.21028 1.22753 0.96027 1.03472 0.82970 1.21836 0.93112 1.10078 1.00204 1.22072 1.01447 1.08205 0.92442 1.24738 0.82713 1.05559 0.99786 1.84105 1.35354 1.68701 1.19393 0.87127 0.89094 0.85943 0.92241 0.90192 0.89397 0.91642 0.82918 0.94515 0.96572 0.94868 0.92535 0.95992 0.97819 0.93228 0.95001 0.93303 0.82475 0.81475 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.68 14.32 67.79 0.97 -2.71 16 2 C -0.16 -2.87 9.52 25.65 0.24 -2.63 16 3 C -0.10 -2.05 5.49 29.85 0.16 -1.88 16 4 C -0.10 -2.30 4.77 30.59 0.15 -2.15 16 5 C 0.16 4.62 2.50 44.17 0.11 4.73 16 6 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 7 N -0.68 -24.02 5.50 -495.46 -2.72 -26.75 16 8 C 0.10 4.02 4.38 86.30 0.38 4.39 16 9 C 0.06 2.99 0.57 -52.93 -0.03 2.96 16 10 C -0.12 -5.61 7.92 71.98 0.57 -5.04 16 11 C -0.10 -5.15 8.09 71.98 0.58 -4.57 16 12 C -0.52 -28.75 8.01 25.60 0.21 -28.55 16 13 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 14 C 0.02 1.26 5.15 84.66 0.44 1.70 16 15 N -0.90 -50.85 9.35 21.45 0.20 -50.65 16 16 Si 0.94 43.79 29.54 68.60 2.03 45.81 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.00 -0.02 5.92 24.83 0.15 0.12 16 21 C -0.23 -6.38 10.80 22.19 0.24 -6.14 16 22 C -0.22 -5.52 10.91 22.19 0.24 -5.28 16 23 C -0.06 -1.58 12.09 66.97 0.81 -0.77 16 24 O -0.18 -6.03 10.64 -2.62 -0.03 -6.06 16 25 H 0.11 1.66 8.06 -2.91 -0.02 1.63 16 26 H 0.09 1.81 7.84 -2.91 -0.02 1.78 16 27 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.06 1.42 6.08 -2.39 -0.01 1.40 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.35 11.69 4.51 -89.70 -0.40 11.28 16 33 H 0.04 1.67 8.00 -2.38 -0.02 1.65 16 34 H 0.02 0.67 8.06 -2.38 -0.02 0.65 16 35 H 0.03 1.35 6.57 -2.39 -0.02 1.34 16 36 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 40 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 41 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.23 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -61.89 352.43 5.24 -56.65 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.55 Total: 26.80 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 5.21 Total: -45.81 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.52 Total: -77.39 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.03 Total: -6.06 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -61.89 5.24 -56.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.763 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds