Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46897 * 109.47491 * 240.00201 * 2 1 3 5 5 C 1.46898 * 111.00248 * 84.99701 * 4 2 1 6 6 C 1.52997 * 109.47118 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47553 * 299.99956 * 6 5 4 8 8 C 1.52995 * 109.47027 * 60.00339 * 6 5 4 9 9 C 1.50702 * 109.47117 * 179.97438 * 6 5 4 10 10 H 1.08003 * 120.00114 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00280 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99804 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 120.00294 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46892 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47011 * 120.00252 * 13 11 9 16 16 H 1.48495 * 109.47244 * 240.00081 * 13 11 9 17 17 C 1.50702 * 109.47357 * 120.00005 * 2 1 3 18 18 C 1.38255 * 120.00225 * 80.00087 * 17 2 1 19 19 C 1.38208 * 120.00357 * 179.70539 * 18 17 2 20 20 C 1.38262 * 119.99554 * 359.97438 * 19 18 17 21 21 C 1.38205 * 120.00475 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00210 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.46839 * 90.00190 * 22 21 20 24 24 C 1.38220 * 120.00039 * 259.73038 * 17 2 1 25 25 H 1.09000 * 109.47258 * 299.99417 * 1 2 3 26 26 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 27 27 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.00901 * 110.99940 * 208.95352 * 4 2 1 29 29 H 1.08996 * 109.47206 * 300.00516 * 5 4 2 30 30 H 1.09008 * 109.46896 * 60.00277 * 5 4 2 31 31 H 1.09004 * 109.47019 * 59.99741 * 7 6 5 32 32 H 1.08997 * 109.47467 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46955 * 300.00537 * 7 6 5 34 34 H 1.08998 * 109.47606 * 60.00073 * 8 6 5 35 35 H 1.09008 * 109.47446 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47367 * 299.99400 * 8 6 5 37 37 H 0.97004 * 119.99859 * 179.97438 * 12 11 9 38 38 H 1.08000 * 119.99329 * 359.72712 * 18 17 2 39 39 H 1.07992 * 120.00457 * 180.02562 * 19 18 17 40 40 H 1.08000 * 119.99741 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47383 * 209.99923 * 22 21 20 42 42 H 1.08993 * 109.47206 * 330.00304 * 22 21 20 43 43 H 0.96698 * 114.00234 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.99604 * 0.27433 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5964 -0.5328 -3.5741 7 6 3.9937 -1.0849 -3.2851 8 6 1.6475 -1.6892 -3.8953 9 6 2.6602 0.4058 -4.7514 10 1 2.3642 1.4380 -4.6358 11 6 3.0963 -0.0532 -5.9762 12 7 3.4563 -1.3103 -6.1171 13 14 3.1748 1.1101 -7.4357 14 1 2.7186 2.4600 -7.0177 15 1 4.5730 1.1913 -7.9293 16 1 2.2957 0.6037 -8.5200 17 6 2.0324 -0.7104 1.2305 18 6 2.0669 -2.0921 1.2654 19 6 2.5333 -2.7435 2.3915 20 6 2.9660 -2.0134 3.4830 21 6 2.9315 -0.6322 3.4482 22 6 3.4026 0.1635 4.6381 23 8 4.7999 0.4334 4.5077 24 6 2.4640 0.0194 2.3220 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.9174 -1.1204 -1.0287 29 1 1.0872 0.6163 -2.5525 30 1 2.7589 1.0463 -2.1181 31 1 3.9471 -1.7639 -2.4336 32 1 4.3600 -1.6227 -4.1595 33 1 4.6697 -0.2610 -3.0562 34 1 0.6520 -1.2959 -4.1013 35 1 2.0133 -2.2272 -4.7700 36 1 1.6009 -2.3683 -3.0440 37 1 3.7628 -1.6333 -6.9789 38 1 1.7296 -2.6623 0.4124 39 1 2.5606 -3.8228 2.4186 40 1 3.3309 -2.5224 4.3628 41 1 2.8539 1.1041 4.6865 42 1 3.2264 -0.4073 5.5497 43 1 5.1721 0.9431 5.2403 44 1 2.4370 1.0988 2.2948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414164331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -35.617833 kcal Electronic energy + Delta-G solvation = -21656.201506 eV Core-core repulsion = 18572.871754 eV Total energy + Delta-G solvation = -3083.329752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.70897 -37.39613 -36.56729 -34.72606 -31.86452 -31.50851 -30.09514 -28.49327 -26.09494 -25.52833 -25.20013 -24.38983 -22.53370 -21.96166 -19.63420 -18.40874 -17.67464 -16.70805 -15.94003 -15.75365 -15.37741 -14.84283 -14.54948 -14.16392 -13.79457 -13.62157 -13.43574 -12.98139 -12.67946 -12.58566 -12.31179 -11.94759 -11.78958 -11.73193 -11.45125 -11.12778 -10.99204 -10.89055 -10.75486 -10.54801 -10.42009 -10.28057 -10.11568 -10.02508 -9.34859 -9.07287 -8.82770 -8.61802 -8.57468 -8.26539 -7.69672 -5.88468 -3.98639 1.31787 1.41388 3.32179 3.40481 3.44046 3.66279 4.29957 4.45664 4.63021 4.78529 4.90880 4.91969 5.10269 5.15855 5.20547 5.37066 5.51708 5.55136 5.65056 5.70359 5.96441 6.02687 6.10207 6.19851 6.35079 6.41372 6.51856 6.53702 6.54620 6.71259 6.76956 6.94198 7.02989 7.12084 7.21525 7.36494 7.41493 7.51321 7.77529 7.79442 7.86549 8.01255 8.24947 8.38058 8.59218 9.02995 9.66269 11.12027 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.003578 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.339093 B = 7824.576990 C = 7969.081684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.119 3.881 3 H 0.044 0.956 4 N -0.679 5.679 5 C 0.075 3.925 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.118 4.118 9 C -0.505 4.505 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.082 4.082 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.101 4.101 22 C 0.119 3.881 23 O -0.566 6.566 24 C -0.096 4.096 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.340 0.660 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.083 0.917 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.257 0.743 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.378 0.622 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 0.401 20.372 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.062 0.938 4 N -0.312 5.312 5 C -0.053 4.053 6 C 0.068 3.932 7 C -0.190 4.190 8 C -0.176 4.176 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.101 4.101 22 C 0.042 3.958 23 O -0.372 6.372 24 C -0.114 4.114 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.224 0.776 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.856 -0.294 19.494 19.704 hybrid contribution 0.927 1.544 -0.074 1.802 sum -1.928 1.249 19.419 19.555 Atomic orbital electron populations 1.21744 0.94026 1.02294 1.00819 1.20454 0.95892 0.95131 0.87577 0.93774 1.60763 1.33563 1.33613 1.03216 1.22204 0.99212 0.93099 0.90785 1.18091 0.91812 0.93193 0.90087 1.21829 0.98790 0.98420 0.99930 1.21628 0.97282 0.98374 1.00275 1.21152 1.43303 0.95871 0.94070 0.92992 1.24885 0.95295 0.94983 0.98442 1.69850 1.44752 1.13927 1.23808 0.86610 0.77511 0.81287 0.82983 1.19971 1.21194 1.21132 1.20087 0.98572 0.94143 0.95446 1.21209 0.97574 0.94074 0.98040 1.21164 0.99694 0.99889 0.93570 1.20967 0.99511 0.93216 0.98727 1.19493 1.01216 0.93793 0.95585 1.20959 0.82115 0.97550 0.95162 1.86616 1.22996 1.77650 1.49942 1.20915 0.98445 0.99574 0.92492 0.93374 0.92200 0.92037 0.84039 0.92458 0.96908 0.97069 0.89854 0.96272 0.96351 0.90789 0.96139 0.93289 0.84698 0.85953 0.86453 0.92935 0.92978 0.77568 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.39 37.16 0.35 -1.49 16 2 C 0.12 1.83 2.82 -68.87 -0.19 1.64 16 3 H 0.04 0.70 7.66 -51.93 -0.40 0.30 16 4 N -0.68 -12.23 4.91 -107.95 -0.53 -12.76 16 5 C 0.08 1.59 4.38 -3.83 -0.02 1.57 16 6 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 7 C -0.13 -3.18 7.92 37.16 0.29 -2.89 16 8 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 9 C -0.51 -13.73 8.01 -34.44 -0.28 -14.01 16 10 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 11 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 12 N -0.88 -24.69 9.35 55.43 0.52 -24.18 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.08 -1.16 4.71 -104.62 -0.49 -1.65 16 18 C -0.09 -1.24 9.01 -39.59 -0.36 -1.60 16 19 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 20 C -0.11 -1.24 9.70 -39.58 -0.38 -1.62 16 21 C -0.10 -1.22 5.51 -104.63 -0.58 -1.80 16 22 C 0.12 1.11 7.17 36.01 0.26 1.37 16 23 O -0.57 -5.84 13.64 -35.23 -0.48 -6.32 16 24 C -0.10 -1.26 9.32 -39.58 -0.37 -1.63 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.34 6.28 6.03 -39.29 -0.24 6.05 16 29 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 30 H 0.01 0.28 8.06 -51.92 -0.42 -0.14 16 31 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 32 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.99 6.07 -51.92 -0.31 1.67 16 36 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.14 1.89 7.72 -52.49 -0.41 1.48 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 43 H 0.38 1.88 9.12 45.56 0.42 2.29 16 44 H 0.12 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -29.75 349.30 -8.81 -38.56 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.52 Total: 6.47 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.04 Total: -23.32 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.01 Total: -36.93 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.48 Total: -6.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.75 -8.81 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414164331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.940 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds