Wall clock time and date at job start Mon Mar 30 2020 02:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46897 * 109.47491 * 240.00201 * 2 1 3 5 5 C 1.46898 * 111.00248 * 84.99701 * 4 2 1 6 6 C 1.52997 * 109.47118 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47553 * 299.99956 * 6 5 4 8 8 C 1.52995 * 109.47027 * 60.00339 * 6 5 4 9 9 C 1.50702 * 109.47117 * 179.97438 * 6 5 4 10 10 H 1.08003 * 120.00114 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00280 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99804 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 120.00294 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46892 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47011 * 120.00252 * 13 11 9 16 16 H 1.48495 * 109.47244 * 240.00081 * 13 11 9 17 17 C 1.50702 * 109.47357 * 120.00005 * 2 1 3 18 18 C 1.38255 * 120.00225 * 80.00087 * 17 2 1 19 19 C 1.38208 * 120.00357 * 179.70539 * 18 17 2 20 20 C 1.38262 * 119.99554 * 359.97438 * 19 18 17 21 21 C 1.38205 * 120.00475 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00210 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.46839 * 90.00190 * 22 21 20 24 24 C 1.38220 * 120.00039 * 259.73038 * 17 2 1 25 25 H 1.09000 * 109.47258 * 299.99417 * 1 2 3 26 26 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 27 27 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.00901 * 110.99940 * 208.95352 * 4 2 1 29 29 H 1.08996 * 109.47206 * 300.00516 * 5 4 2 30 30 H 1.09008 * 109.46896 * 60.00277 * 5 4 2 31 31 H 1.09004 * 109.47019 * 59.99741 * 7 6 5 32 32 H 1.08997 * 109.47467 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46955 * 300.00537 * 7 6 5 34 34 H 1.08998 * 109.47606 * 60.00073 * 8 6 5 35 35 H 1.09008 * 109.47446 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47367 * 299.99400 * 8 6 5 37 37 H 0.97004 * 119.99859 * 179.97438 * 12 11 9 38 38 H 1.08000 * 119.99329 * 359.72712 * 18 17 2 39 39 H 1.07992 * 120.00457 * 180.02562 * 19 18 17 40 40 H 1.08000 * 119.99741 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47383 * 209.99923 * 22 21 20 42 42 H 1.08993 * 109.47206 * 330.00304 * 22 21 20 43 43 H 0.96698 * 114.00234 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.99604 * 0.27433 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5964 -0.5328 -3.5741 7 6 3.9937 -1.0849 -3.2851 8 6 1.6475 -1.6892 -3.8953 9 6 2.6602 0.4058 -4.7514 10 1 2.3642 1.4380 -4.6358 11 6 3.0963 -0.0532 -5.9762 12 7 3.4563 -1.3103 -6.1171 13 14 3.1748 1.1101 -7.4357 14 1 2.7186 2.4600 -7.0177 15 1 4.5730 1.1913 -7.9293 16 1 2.2957 0.6037 -8.5200 17 6 2.0324 -0.7104 1.2305 18 6 2.0669 -2.0921 1.2654 19 6 2.5333 -2.7435 2.3915 20 6 2.9660 -2.0134 3.4830 21 6 2.9315 -0.6322 3.4482 22 6 3.4026 0.1635 4.6381 23 8 4.7999 0.4334 4.5077 24 6 2.4640 0.0194 2.3220 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.9174 -1.1204 -1.0287 29 1 1.0872 0.6163 -2.5525 30 1 2.7589 1.0463 -2.1181 31 1 3.9471 -1.7639 -2.4336 32 1 4.3600 -1.6227 -4.1595 33 1 4.6697 -0.2610 -3.0562 34 1 0.6520 -1.2959 -4.1013 35 1 2.0133 -2.2272 -4.7700 36 1 1.6009 -2.3683 -3.0440 37 1 3.7628 -1.6333 -6.9789 38 1 1.7296 -2.6623 0.4124 39 1 2.5606 -3.8228 2.4186 40 1 3.3309 -2.5224 4.3628 41 1 2.8539 1.1041 4.6865 42 1 3.2264 -0.4073 5.5497 43 1 5.1721 0.9431 5.2403 44 1 2.4370 1.0988 2.2948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414164331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:21 Heat of formation + Delta-G solvation = -53.797291 kcal Electronic energy + Delta-G solvation = -21656.989826 eV Core-core repulsion = 18572.871754 eV Total energy + Delta-G solvation = -3084.118073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69911 -38.78417 -37.58694 -36.21511 -33.61503 -32.42614 -31.50903 -29.75720 -27.51393 -27.26088 -26.88986 -25.95701 -23.79291 -22.90300 -20.75496 -20.28594 -18.35581 -18.02902 -17.58134 -16.88783 -16.76264 -16.28644 -15.83216 -15.42776 -15.14082 -14.58111 -14.52909 -14.46102 -14.24641 -14.07020 -13.59849 -13.28035 -13.15399 -13.02899 -12.84328 -12.75688 -12.69051 -12.48513 -12.34321 -12.11699 -12.04876 -11.79629 -11.63268 -11.29745 -10.98672 -10.90836 -10.58573 -10.34510 -9.77391 -9.61653 -9.20323 -7.96504 -6.13365 0.37289 0.45434 1.40960 1.44099 1.53649 2.46476 2.74611 3.25520 3.36018 3.61732 3.72596 4.01308 4.13061 4.24409 4.29515 4.40875 4.46413 4.54679 4.56628 4.60605 4.69333 4.73009 4.87034 4.88575 4.97043 5.05146 5.11401 5.15518 5.18953 5.26920 5.37896 5.44916 5.53329 5.56577 5.62907 5.67941 5.70640 5.77655 6.08589 6.18865 6.26994 6.34634 6.49502 6.62275 6.92730 6.96020 7.54159 9.01837 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.003578 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.339093 B = 7824.576990 C = 7969.081684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.121 3.879 3 H 0.040 0.960 4 N -0.676 5.676 5 C 0.091 3.909 6 C 0.060 3.940 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.526 4.526 10 H 0.044 0.956 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.094 4.094 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.108 4.108 21 C -0.109 4.109 22 C 0.119 3.881 23 O -0.592 6.592 24 C -0.108 4.108 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.337 0.663 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.257 0.743 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.399 0.601 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 0.603 22.290 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.011 3.989 3 H 0.058 0.942 4 N -0.308 5.308 5 C -0.038 4.038 6 C 0.060 3.940 7 C -0.178 4.178 8 C -0.161 4.161 9 C -0.565 4.565 10 H 0.062 0.938 11 C -0.177 4.177 12 N -0.542 5.542 13 Si 0.772 3.228 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.095 4.095 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.126 4.126 21 C -0.109 4.109 22 C 0.042 3.958 23 O -0.401 6.401 24 C -0.126 4.126 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.249 0.751 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.844 -0.082 21.436 21.624 hybrid contribution 0.942 1.463 -0.584 1.835 sum -1.902 1.381 20.851 20.984 Atomic orbital electron populations 1.21694 0.93072 1.02243 1.01284 1.20472 0.96579 0.94745 0.87072 0.94235 1.60703 1.33296 1.33150 1.03634 1.21864 0.98376 0.92791 0.90788 1.18137 0.92034 0.93046 0.90820 1.21658 0.98405 0.98229 0.99482 1.21447 0.96664 0.98353 0.99650 1.21460 1.43515 0.96029 0.95450 0.93787 1.25538 0.95130 0.96324 1.00709 1.69978 1.44978 1.15049 1.24224 0.85712 0.77438 0.79602 0.80072 1.19679 1.20913 1.20830 1.19972 0.99844 0.94411 0.95250 1.21219 0.98648 0.93944 0.98601 1.21428 0.98873 1.01077 0.93084 1.21316 0.98688 0.93286 0.99330 1.19906 1.00384 0.94473 0.96121 1.21034 0.81864 0.98230 0.94687 1.86542 1.23508 1.78361 1.51723 1.21066 0.98773 1.00004 0.92769 0.91289 0.93306 0.92306 0.84346 0.92941 0.97750 0.95012 0.92477 0.96781 0.97006 0.93337 0.94661 0.93340 0.85613 0.83930 0.84048 0.91628 0.90635 0.75065 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.39 71.98 0.68 -2.74 16 2 C 0.12 3.64 2.82 44.17 0.12 3.76 16 3 H 0.04 1.23 7.66 -2.38 -0.02 1.21 16 4 N -0.68 -24.14 4.91 -495.45 -2.43 -26.57 16 5 C 0.09 3.85 4.38 86.30 0.38 4.22 16 6 C 0.06 2.96 0.57 -52.93 -0.03 2.93 16 7 C -0.12 -5.81 7.92 71.98 0.57 -5.24 16 8 C -0.10 -5.09 8.09 71.98 0.58 -4.51 16 9 C -0.53 -28.87 8.01 25.60 0.21 -28.67 16 10 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 11 C 0.02 1.21 5.15 84.65 0.44 1.64 16 12 N -0.90 -51.00 9.35 21.45 0.20 -50.80 16 13 Si 0.94 43.91 29.54 68.60 2.03 45.93 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 C -0.09 -2.58 4.71 -19.86 -0.09 -2.68 16 18 C -0.11 -2.79 9.01 22.27 0.20 -2.59 16 19 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 20 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 21 C -0.11 -2.39 5.51 -19.87 -0.11 -2.50 16 22 C 0.12 1.87 7.17 71.24 0.51 2.38 16 23 O -0.59 -10.73 13.64 -148.98 -2.03 -12.77 16 24 C -0.11 -2.68 9.32 22.27 0.21 -2.47 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.42 7.45 -2.39 -0.02 1.40 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.34 12.33 6.03 -89.69 -0.54 11.79 16 29 H 0.05 2.26 7.44 -2.39 -0.02 2.24 16 30 H 0.00 0.19 8.06 -2.38 -0.02 0.17 16 31 H 0.03 1.36 6.57 -2.38 -0.02 1.34 16 32 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 2.63 6.07 -2.38 -0.01 2.62 16 36 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 37 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.13 3.47 7.72 -2.91 -0.02 3.45 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 42 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 43 H 0.40 2.97 9.12 -74.06 -0.68 2.29 16 44 H 0.12 2.83 8.04 -2.91 -0.02 2.81 16 Total: -1.00 -63.01 349.30 1.63 -61.38 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.23 Total: 23.89 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.10 Total: -41.06 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.23 Total: -77.38 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -2.03 Total: -12.77 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.01 1.63 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414164331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.582 kcal (2) G-P(sol) polarization free energy of solvation -63.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds