Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 N 1.46492 * 109.47278 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00120 * 270.37576 * 4 3 2 6 6 H 1.07994 * 119.99693 * 325.85258 * 5 4 3 7 7 C 1.38812 * 119.99800 * 145.84447 * 5 4 3 8 8 N 1.31618 * 120.00234 * 337.18440 * 7 5 4 9 9 Si 1.86803 * 119.99890 * 157.18411 * 7 5 4 10 10 H 1.48506 * 109.47048 * 60.00238 * 9 7 5 11 11 H 1.48495 * 109.47301 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47111 * 300.00490 * 9 7 5 13 13 C 1.46499 * 119.99989 * 90.38038 * 4 3 2 14 14 C 1.52997 * 109.47300 * 90.00057 * 13 4 3 15 15 H 1.09004 * 109.46970 * 304.99913 * 14 13 4 16 16 O 1.42892 * 109.47292 * 64.99759 * 14 13 4 17 17 C 1.53008 * 109.46900 * 185.00203 * 14 13 4 18 18 H 1.08991 * 109.46710 * 299.99568 * 17 14 13 19 19 C 1.52997 * 109.47032 * 60.00069 * 17 14 13 20 20 C 1.50706 * 109.46783 * 179.97438 * 17 14 13 21 21 C 1.38232 * 120.00132 * 299.72507 * 20 17 14 22 22 C 1.38227 * 120.00338 * 179.81068 * 21 20 17 23 23 C 1.38245 * 119.99568 * 0.39760 * 22 21 20 24 24 C 1.38228 * 119.99929 * 359.85626 * 23 22 21 25 25 C 1.38229 * 119.99592 * 119.99795 * 20 17 14 26 26 H 1.08998 * 109.46894 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46723 * 299.99763 * 1 2 3 29 29 H 1.08999 * 109.47050 * 239.99843 * 2 1 3 30 30 H 1.08998 * 109.46894 * 119.99846 * 2 1 3 31 31 H 1.09004 * 109.46570 * 59.99817 * 3 2 1 32 32 H 1.09000 * 109.46656 * 300.00572 * 3 2 1 33 33 H 0.97004 * 120.00108 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47095 * 329.99811 * 13 4 3 35 35 H 1.09007 * 109.47088 * 210.00248 * 13 4 3 36 36 H 0.96707 * 113.99820 * 60.00501 * 16 14 13 37 37 H 1.09004 * 109.46749 * 179.97438 * 19 17 14 38 38 H 1.09000 * 109.47241 * 299.99528 * 19 17 14 39 39 H 1.08991 * 109.47782 * 60.00156 * 19 17 14 40 40 H 1.08003 * 119.99984 * 359.97438 * 21 20 17 41 41 H 1.08003 * 120.00714 * 180.23066 * 22 21 20 42 42 H 1.08000 * 119.99757 * 179.83558 * 23 22 21 43 43 H 1.08008 * 120.00043 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00759 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4349 1.1868 6 1 3.7885 1.9544 2.0446 7 6 5.3977 0.7594 1.2866 8 7 5.6777 -0.2159 0.4483 9 14 6.6268 1.2345 2.6107 10 1 6.0060 1.0588 3.9483 11 1 7.8284 0.3685 2.5045 12 1 7.0231 2.6544 2.4316 13 6 4.2380 1.4508 -1.2678 14 6 4.4932 2.8961 -1.7000 15 1 3.5468 3.4354 -1.7414 16 8 5.3611 3.5289 -0.7576 17 6 5.1473 2.9068 -3.0832 18 1 6.0936 2.3675 -3.0417 19 6 4.2178 2.2293 -4.0921 20 6 5.3981 4.3305 -3.5092 21 6 4.3394 5.2098 -3.6387 22 6 4.5698 6.5167 -4.0256 23 6 5.8582 6.9420 -4.2910 24 6 6.9162 6.0613 -4.1665 25 6 6.6862 4.7553 -3.7758 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 6.5224 -0.6878 0.5178 34 1 3.6492 0.9418 -2.0310 35 1 5.1904 0.9361 -1.1404 36 1 6.2239 3.1012 -0.6687 37 1 4.6837 2.2373 -5.0775 38 1 4.0361 1.1996 -3.7842 39 1 3.2716 2.7685 -4.1336 40 1 3.3325 4.8765 -3.4351 41 1 3.7431 7.2048 -4.1233 42 1 6.0379 7.9624 -4.5959 43 1 7.9227 6.3934 -4.3742 44 1 7.5129 4.0673 -3.6784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450418357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = -22.322925 kcal Electronic energy + Delta-G solvation = -22392.045297 eV Core-core repulsion = 19309.292055 eV Total energy + Delta-G solvation = -3082.753242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.41387 -37.29219 -35.31808 -33.42405 -32.71130 -30.75881 -30.65381 -29.44891 -26.97139 -25.47642 -24.28935 -22.71824 -22.26017 -21.24711 -19.98636 -19.47781 -17.11910 -16.43393 -15.71231 -15.14661 -14.75510 -14.40893 -14.22257 -14.13013 -13.95658 -13.59396 -13.21801 -13.14158 -12.84478 -12.64300 -12.34366 -11.97519 -11.89874 -11.55447 -11.26429 -11.18209 -10.92406 -10.72226 -10.67877 -10.64825 -10.53432 -10.28098 -9.93955 -9.89626 -9.80428 -9.61553 -9.07972 -8.71057 -8.42989 -8.34257 -6.51053 -5.71039 -3.22286 1.60501 1.61045 3.42064 3.47629 3.53649 4.00803 4.55368 4.91502 5.00540 5.14582 5.26792 5.27995 5.34210 5.40823 5.58433 5.65024 5.74110 5.76705 5.78656 5.84714 5.90034 6.08990 6.13158 6.18976 6.23017 6.28791 6.31288 6.36682 6.50063 6.50891 6.58833 6.65630 6.68227 6.71046 6.78319 6.89507 7.02379 7.08571 7.22944 7.28882 7.68214 7.88515 8.54495 8.66167 9.25406 9.89123 10.44730 11.28988 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.005981 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.362449 B = 4680.001306 C = 5871.633392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.148 3.852 4 N -0.578 5.578 5 C -0.230 4.230 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.112 3.888 14 C 0.100 3.900 15 H 0.076 0.924 16 O -0.544 6.544 17 C -0.090 4.090 18 H 0.077 0.923 19 C -0.140 4.140 20 C -0.048 4.048 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.252 0.748 34 H 0.032 0.968 35 H 0.103 0.897 36 H 0.363 0.637 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 7.440 -10.282 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.297 5.297 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.207 1.207 13 C -0.015 4.015 14 C 0.038 3.962 15 H 0.094 0.906 16 O -0.348 6.348 17 C -0.110 4.110 18 H 0.095 0.905 19 C -0.197 4.197 20 C -0.048 4.048 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.209 0.791 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.288 7.729 -10.198 12.999 hybrid contribution 1.183 -0.175 0.585 1.331 sum -1.105 7.554 -9.613 12.276 Atomic orbital electron populations 1.21760 0.97883 1.00247 1.00636 1.22096 0.92932 1.00970 1.01995 1.20921 0.85551 0.93298 0.98041 1.43710 0.99124 1.84616 1.02224 1.18940 1.02498 1.24467 0.90067 0.92525 1.24941 1.00668 0.95580 0.98180 1.69972 1.23779 1.20595 1.39711 0.86544 0.81069 0.78243 0.82020 1.21074 1.21971 1.20721 1.21745 1.00866 0.92308 0.86592 1.22702 0.91835 0.97568 0.84067 0.90634 1.86514 1.28861 1.56291 1.63094 1.21044 1.00693 0.91554 0.97684 0.90500 1.21813 0.98868 1.01127 0.97893 1.19873 0.93001 0.95864 0.96061 1.20958 0.98921 0.93391 0.99726 1.21068 0.96776 0.95925 1.00069 1.21018 0.93068 0.99268 1.02024 1.21057 0.98620 0.93862 1.00358 1.21058 0.96449 0.96021 1.00230 0.93737 0.93943 0.93439 0.93176 0.91929 0.94127 0.95171 0.93812 0.94933 0.87968 0.79092 0.93153 0.91330 0.92803 0.86436 0.86604 0.86756 0.86638 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.74 6.26 -26.73 -0.17 -2.91 16 3 C 0.15 3.11 5.67 -4.05 -0.02 3.08 16 4 N -0.58 -13.89 2.43 -173.24 -0.42 -14.31 16 5 C -0.23 -6.15 8.99 -15.06 -0.14 -6.29 16 6 H 0.06 1.57 7.93 -52.49 -0.42 1.15 16 7 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 8 N -0.90 -24.78 11.32 55.49 0.63 -24.15 16 9 Si 0.89 21.48 29.61 -169.99 -5.03 16.45 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.11 2.44 4.76 -4.04 -0.02 2.42 16 14 C 0.10 1.92 2.61 -26.73 -0.07 1.85 16 15 H 0.08 1.50 7.41 -51.93 -0.38 1.11 16 16 O -0.54 -11.71 12.44 -35.23 -0.44 -12.15 16 17 C -0.09 -1.43 2.34 -91.77 -0.21 -1.64 16 18 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 19 C -0.14 -1.96 8.66 37.16 0.32 -1.64 16 20 C -0.05 -0.73 4.43 -104.62 -0.46 -1.19 16 21 C -0.11 -1.64 8.71 -39.59 -0.34 -1.98 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.14 -1.70 10.05 -39.58 -0.40 -2.09 16 24 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 32 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.03 0.68 6.10 -51.93 -0.32 0.36 16 35 H 0.10 2.54 5.32 -51.93 -0.28 2.26 16 36 H 0.36 7.46 9.05 45.56 0.41 7.87 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.00 6.32 -51.93 -0.33 0.67 16 39 H 0.05 0.72 7.37 -51.93 -0.38 0.33 16 40 H 0.12 1.64 7.10 -52.48 -0.37 1.27 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 44 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -28.91 354.08 -9.01 -37.92 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.67 Total: 9.21 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.41 Total: -18.31 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.21 Total: -38.46 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.44 Total: -12.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.91 -9.01 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450418357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.594 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds