Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.62692 * 2 1 4 4 C 1.53006 * 109.62867 * 239.60787 * 2 1 3 5 5 C 1.50096 * 110.13078 * 190.34962 * 4 2 1 6 6 C 1.31557 * 123.79303 * 17.16305 * 5 4 2 7 7 C 1.47106 * 118.10506 * 179.57922 * 6 5 4 8 8 O 1.21612 * 119.99764 * 329.66880 * 7 6 5 9 9 N 1.34772 * 119.99933 * 149.66523 * 7 6 5 10 10 C 1.46500 * 119.99855 * 355.12389 * 9 7 6 11 11 C 1.50696 * 109.47421 * 289.93849 * 10 9 7 12 12 H 1.08005 * 119.99437 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00479 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99739 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99686 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46927 * 89.99750 * 15 13 11 17 17 H 1.48497 * 109.47242 * 209.99972 * 15 13 11 18 18 H 1.48501 * 109.47123 * 330.00437 * 15 13 11 19 19 C 1.46496 * 119.99930 * 175.12242 * 9 7 6 20 20 C 1.53000 * 109.47182 * 274.64155 * 19 9 7 21 21 C 1.52998 * 117.50053 * 185.10183 * 20 19 9 22 22 C 1.52995 * 60.00277 * 252.50965 * 21 20 19 23 23 C 1.50090 * 123.79059 * 359.86891 * 6 5 4 24 24 C 1.52847 * 110.22637 * 16.68910 * 23 6 5 25 25 H 1.09007 * 109.47300 * 180.39038 * 1 2 3 26 26 H 1.08998 * 109.47750 * 300.39238 * 1 2 3 27 27 H 1.09001 * 109.47247 * 60.39336 * 1 2 3 28 28 H 1.08997 * 109.36000 * 70.15102 * 4 2 1 29 29 H 1.08999 * 109.35995 * 310.54754 * 4 2 1 30 30 H 1.08005 * 118.10690 * 197.19360 * 5 4 2 31 31 H 1.09001 * 109.47496 * 49.93958 * 10 9 7 32 32 H 1.09006 * 109.46887 * 169.93836 * 10 9 7 33 33 H 0.97006 * 119.99295 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.47149 * 154.64302 * 19 9 7 35 35 H 1.09003 * 109.47184 * 34.64175 * 19 9 7 36 36 H 1.09001 * 115.56348 * 330.79072 * 20 19 9 37 37 H 1.08996 * 117.50109 * 145.01840 * 21 20 19 38 38 H 1.09004 * 117.49534 * 359.97438 * 21 20 19 39 39 H 1.09003 * 117.49805 * 107.48674 * 22 21 20 40 40 H 1.08994 * 117.50094 * 252.49026 * 22 21 20 41 41 H 1.08998 * 109.36517 * 137.08844 * 23 6 5 42 42 H 1.09000 * 109.35735 * 256.67793 * 23 6 5 43 43 H 1.09000 * 109.69411 * 190.79098 * 24 23 6 44 44 H 1.08999 * 109.57356 * 70.39143 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0440 -0.7291 -1.2431 5 6 3.5233 -0.9580 -1.1330 6 6 4.1935 -0.8815 -0.0035 7 6 5.6414 -1.1391 -0.0381 8 8 6.1028 -1.9073 -0.8602 9 7 6.4565 -0.5238 0.8413 10 6 5.9170 0.4813 1.7606 11 6 5.5392 1.7182 0.9872 12 1 5.6866 1.7524 -0.0822 13 6 5.0063 2.8067 1.6448 14 7 4.6762 3.8858 0.9696 15 14 4.7520 2.7477 3.4944 16 1 5.9727 3.2458 4.1779 17 1 3.5949 3.6025 3.8625 18 1 4.4866 1.3480 3.9132 19 6 7.8819 -0.8600 0.8780 20 6 8.0946 -2.0829 1.7724 21 6 9.5360 -2.5222 2.0374 22 6 8.6405 -3.3523 1.1155 23 6 3.5652 -0.5526 1.3193 24 6 2.0492 -0.7322 1.2435 25 1 -0.3634 -1.0277 0.0070 26 1 -0.3634 0.5199 0.8864 27 1 -0.3634 0.5077 -0.8935 28 1 1.8365 -0.1263 -2.1272 29 1 1.5357 -1.6889 -1.3351 30 1 4.0693 -1.1991 -2.0332 31 1 5.0344 0.0810 2.2594 32 1 6.6716 0.7348 2.5053 33 1 4.3009 4.6514 1.4322 34 1 8.4442 -0.0157 1.2771 35 1 8.2286 -1.0831 -0.1311 36 1 7.3746 -2.2048 2.5816 37 1 9.7643 -2.9331 3.0208 38 1 10.3327 -1.9402 1.5741 39 1 8.8481 -3.3161 0.0460 40 1 8.2799 -4.3093 1.4923 41 1 3.9713 -1.2122 2.0862 42 1 3.7904 0.4817 1.5790 43 1 1.5846 -0.3131 2.1360 44 1 1.8104 -1.7932 1.1701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455437155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = 6.077993 kcal Electronic energy + Delta-G solvation = -22806.428552 eV Core-core repulsion = 19724.906866 eV Total energy + Delta-G solvation = -3081.521686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78242 -37.79798 -36.77992 -35.00837 -32.53634 -32.24821 -30.40644 -28.42839 -27.22185 -25.66516 -23.03258 -22.51912 -22.14549 -21.17507 -20.33270 -19.03248 -17.50540 -17.09189 -16.11479 -15.85592 -14.79891 -14.62866 -14.20808 -14.17338 -13.80337 -13.64969 -13.59511 -12.86970 -12.71640 -12.49410 -12.33244 -12.21846 -11.99893 -11.80140 -11.54062 -11.34383 -11.29906 -10.94268 -10.91878 -10.61299 -10.37955 -10.24301 -10.09173 -10.06855 -9.73165 -9.65060 -9.49743 -8.96084 -8.69691 -8.26086 -7.67998 -6.22102 -4.21888 2.27987 3.14820 3.22043 3.24942 3.75850 3.95167 4.16338 4.23830 5.00473 5.06479 5.08444 5.10715 5.17525 5.20229 5.26410 5.54081 5.65837 5.70114 5.77646 5.78345 5.83709 5.92505 6.00638 6.02422 6.04640 6.08398 6.11276 6.16696 6.30327 6.31880 6.35034 6.41504 6.44567 6.51327 6.58956 6.72224 6.78177 6.97631 7.09268 7.30466 7.39559 7.50589 8.20576 8.40623 8.84996 9.01946 9.36107 10.90435 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.007967 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.225412 B = 3513.692239 C = 4970.353050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.077 4.077 5 C -0.110 4.110 6 C -0.119 4.119 7 C 0.558 3.442 8 O -0.571 6.571 9 N -0.587 5.587 10 C 0.179 3.821 11 C -0.531 4.531 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.888 5.888 15 Si 0.861 3.139 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.261 1.261 19 C 0.148 3.852 20 C -0.163 4.163 21 C -0.181 4.181 22 C -0.172 4.172 23 C -0.102 4.102 24 C -0.111 4.111 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.061 0.939 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -9.305 2.445 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.114 4.114 5 C -0.129 4.129 6 C -0.122 4.122 7 C 0.348 3.652 8 O -0.453 6.453 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.569 4.569 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.525 5.525 15 Si 0.688 3.312 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.185 1.185 19 C 0.024 3.976 20 C -0.182 4.182 21 C -0.219 4.219 22 C -0.209 4.209 23 C -0.138 4.138 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.961 -9.483 2.062 9.901 hybrid contribution 0.008 0.308 1.035 1.080 sum -1.953 -9.175 3.098 9.878 Atomic orbital electron populations 1.21808 0.95660 1.01124 1.01468 1.21221 0.94694 1.00963 0.94691 0.89733 1.20460 0.92537 1.00071 0.98363 1.22439 0.95703 0.97527 0.97275 1.20499 0.92545 1.02554 0.96620 1.18535 0.87285 0.79498 0.79857 1.90668 1.77662 1.38585 1.38341 1.47765 1.07326 1.39628 1.36847 1.20665 0.95918 0.87735 0.89805 1.21332 1.42188 0.96791 0.96574 0.90418 1.24833 0.94929 0.95110 0.97686 1.69886 1.42300 1.04419 1.35895 0.87090 0.78628 0.79001 0.86520 1.19934 1.20752 1.18543 1.20899 0.82701 0.94911 0.99045 1.22811 0.96509 0.96743 1.02145 1.22918 0.93713 1.04413 1.00822 1.22941 1.03812 0.95181 0.98937 1.21079 0.93623 1.05452 0.93624 1.21632 0.96026 0.99629 0.97584 0.93152 0.92821 0.92907 0.91044 0.91118 0.87315 0.92510 0.95438 0.92389 0.90195 0.90700 0.88027 0.89177 0.88869 0.88643 0.89494 0.91981 0.85476 0.91994 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 37.16 0.34 -1.44 16 2 C -0.10 -1.50 2.76 -90.43 -0.25 -1.75 16 3 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 4 C -0.08 -1.17 5.43 -28.17 -0.15 -1.32 16 5 C -0.11 -2.04 9.35 -36.45 -0.34 -2.38 16 6 C -0.12 -2.41 4.93 -103.17 -0.51 -2.92 16 7 C 0.56 12.26 7.09 -12.66 -0.09 12.17 16 8 O -0.57 -13.45 15.99 5.27 0.08 -13.36 16 9 N -0.59 -12.32 2.57 -176.46 -0.45 -12.78 16 10 C 0.18 3.94 3.90 -5.20 -0.02 3.92 16 11 C -0.53 -13.68 7.60 -34.44 -0.26 -13.94 16 12 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 13 C 0.08 2.05 5.23 -17.82 -0.09 1.95 16 14 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 15 Si 0.86 19.22 26.92 -169.99 -4.58 14.65 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 19 C 0.15 2.70 5.65 -4.04 -0.02 2.68 16 20 C -0.16 -2.55 5.98 -90.62 -0.54 -3.10 16 21 C -0.18 -2.31 10.25 -26.73 -0.27 -2.58 16 22 C -0.17 -2.45 10.18 -26.73 -0.27 -2.72 16 23 C -0.10 -1.90 3.71 -28.26 -0.10 -2.01 16 24 C -0.11 -1.74 5.29 -26.62 -0.14 -1.88 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.11 2.08 7.52 -52.48 -0.39 1.68 16 31 H 0.06 1.21 2.76 -51.93 -0.14 1.07 16 32 H 0.03 0.59 7.27 -51.93 -0.38 0.21 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 35 H 0.07 1.42 7.23 -51.93 -0.38 1.04 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.42 8.03 -51.93 -0.42 1.01 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.11 7.33 -51.93 -0.38 0.73 16 42 H 0.13 2.71 3.77 -51.93 -0.20 2.52 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -28.91 342.56 -9.10 -38.00 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.35 Total: 8.04 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.73 Total: -15.32 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.32 Total: -37.18 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.58 Total: 14.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.91 -9.10 -38.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455437155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.082 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds