Wall clock time and date at job start Mon Mar 30 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47432 * 2 1 4 4 C 1.53007 * 109.46916 * 240.00113 * 2 1 3 5 5 C 1.50699 * 109.46978 * 174.99563 * 4 2 1 6 6 C 1.38258 * 119.94549 * 269.73011 * 5 4 2 7 7 C 1.38149 * 120.05373 * 179.72682 * 6 5 4 8 8 C 1.38733 * 119.94156 * 0.57438 * 7 6 5 9 9 O 1.35900 * 120.05474 * 179.68410 * 8 7 6 10 10 C 1.38738 * 119.88786 * 359.69726 * 8 7 6 11 11 C 1.38138 * 119.94422 * 0.02562 * 10 8 7 12 12 N 1.46900 * 109.47107 * 120.00663 * 2 1 3 13 13 C 1.46899 * 110.99928 * 274.99198 * 12 2 1 14 14 C 1.53001 * 109.47358 * 179.97438 * 13 12 2 15 15 C 1.52994 * 109.47384 * 300.00854 * 14 13 12 16 16 C 1.53004 * 109.46606 * 60.00738 * 14 13 12 17 17 C 1.50695 * 109.47195 * 180.02562 * 14 13 12 18 18 H 1.08002 * 120.00049 * 1.24275 * 17 14 13 19 19 C 1.37881 * 120.00131 * 181.24403 * 17 14 13 20 20 N 1.31510 * 120.00232 * 194.11098 * 19 17 14 21 21 Si 1.86800 * 119.99615 * 14.11324 * 19 17 14 22 22 H 1.48504 * 109.46924 * 84.53491 * 21 19 17 23 23 H 1.48501 * 109.46951 * 204.53055 * 21 19 17 24 24 H 1.48495 * 109.47359 * 324.53337 * 21 19 17 25 25 H 1.09006 * 109.46845 * 299.99333 * 1 2 3 26 26 H 1.08999 * 109.47432 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47319 * 59.99446 * 1 2 3 28 28 H 1.09000 * 109.47382 * 295.00533 * 4 2 1 29 29 H 1.09009 * 109.46607 * 55.00123 * 4 2 1 30 30 H 1.08004 * 119.97535 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.03024 * 180.24410 * 7 6 5 32 32 H 0.96706 * 113.99644 * 270.01360 * 9 8 7 33 33 H 1.08004 * 120.02006 * 179.97438 * 10 8 7 34 34 H 1.08002 * 119.97363 * 179.97438 * 11 10 8 35 35 H 1.00895 * 111.00084 * 38.95000 * 12 2 1 36 36 H 1.08996 * 109.47374 * 300.00559 * 13 12 2 37 37 H 1.09005 * 109.46529 * 60.00558 * 13 12 2 38 38 H 1.09003 * 109.47568 * 69.50820 * 15 14 13 39 39 H 1.08998 * 109.47585 * 189.51399 * 15 14 13 40 40 H 1.09006 * 109.46808 * 309.51154 * 15 14 13 41 41 H 1.08996 * 109.47333 * 59.99844 * 16 14 13 42 42 H 1.08996 * 109.46720 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.46688 * 299.99861 * 16 14 13 44 44 H 0.96993 * 120.00082 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6148 -1.3129 6 6 4.1311 0.4471 -1.9736 7 6 5.5077 0.5499 -2.0284 8 6 6.2989 -0.4200 -1.4299 9 8 7.6533 -0.3245 -1.4880 10 6 5.7050 -1.4876 -0.7724 11 6 4.3281 -1.5827 -0.7155 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5952 -0.5335 3.5744 15 6 1.6453 -1.6892 3.8951 16 6 3.9923 -1.0866 3.2860 17 6 2.6591 0.4050 4.7517 18 1 2.3448 1.4324 4.6410 19 6 3.1190 -0.0477 5.9701 20 7 2.9211 0.6686 7.0551 21 14 4.0233 -1.6786 6.0796 22 1 5.4595 -1.4704 5.7643 23 1 3.8926 -2.2257 7.4539 24 1 3.4369 -2.6360 5.1078 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.7515 -1.7715 -1.2058 29 1 1.6053 -0.2616 -2.1370 30 1 3.5148 1.1990 -2.4439 31 1 5.9676 1.3816 -2.5413 32 1 8.0457 -0.7604 -2.2569 33 1 6.3189 -2.2440 -0.3060 34 1 3.8653 -2.4138 -0.2041 35 1 1.4495 -1.4980 1.4099 36 1 2.7590 1.0459 2.1182 37 1 1.0872 0.6161 2.5525 38 1 1.7260 -2.4516 3.1202 39 1 1.9118 -2.1217 4.8595 40 1 0.6213 -1.3177 3.9340 41 1 4.6690 -0.2632 3.0575 42 1 4.3573 -1.6254 4.1603 43 1 3.9456 -1.7655 2.4346 44 1 3.2443 0.3499 7.9123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:37 Heat of formation + Delta-G solvation = -37.982632 kcal Electronic energy + Delta-G solvation = -22281.681749 eV Core-core repulsion = 19198.249451 eV Total energy + Delta-G solvation = -3083.432298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62908 -39.25904 -37.90156 -36.47778 -33.98904 -32.18512 -31.76170 -30.24543 -27.90714 -27.11332 -26.87805 -25.73325 -23.58781 -22.62324 -21.38708 -20.57840 -19.24693 -18.06286 -17.34783 -16.89115 -16.64801 -16.22327 -15.87311 -15.58206 -15.25505 -14.82686 -14.75493 -14.35401 -14.24166 -14.09437 -13.94459 -13.68420 -13.50577 -13.16288 -13.04023 -12.70624 -12.58182 -12.39685 -12.28197 -11.93329 -11.86576 -11.72229 -11.65777 -11.52975 -11.25072 -10.92422 -10.56909 -10.29222 -9.76511 -9.25824 -9.03173 -8.29551 -6.27735 0.44892 0.58447 1.35222 1.37464 1.48543 2.35161 2.85405 3.08206 3.42132 3.44568 3.96805 4.07490 4.20105 4.25116 4.28745 4.44978 4.47716 4.55403 4.61223 4.63471 4.67801 4.86479 4.89880 4.94072 4.94425 5.02581 5.05538 5.09957 5.11995 5.23507 5.25965 5.29100 5.35790 5.36805 5.54291 5.61909 5.62505 5.77669 5.87868 5.90657 6.10530 6.30536 6.37779 6.70563 6.82713 6.94079 7.37288 8.87965 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.005653 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.869640 B = 4952.099038 C = 6058.589087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.059 0.941 4 C -0.059 4.059 5 C -0.077 4.077 6 C -0.112 4.112 7 C -0.160 4.160 8 C 0.080 3.920 9 O -0.516 6.516 10 C -0.163 4.163 11 C -0.079 4.079 12 N -0.674 5.674 13 C 0.105 3.895 14 C 0.036 3.964 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.512 4.512 18 H 0.025 0.975 19 C 0.016 3.984 20 N -0.950 5.950 21 Si 0.943 3.057 22 H -0.291 1.291 23 H -0.316 1.316 24 H -0.208 1.208 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.405 0.595 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.343 0.657 36 H 0.039 0.961 37 H 0.010 0.990 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -7.018 -23.140 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.077 0.923 4 C -0.097 4.097 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.178 4.178 8 C 0.036 3.964 9 O -0.328 6.328 10 C -0.181 4.181 11 C -0.097 4.097 12 N -0.306 5.306 13 C -0.024 4.024 14 C 0.035 3.965 15 C -0.195 4.195 16 C -0.181 4.181 17 C -0.550 4.550 18 H 0.044 0.956 19 C -0.181 4.181 20 N -0.590 5.590 21 Si 0.774 3.226 22 H -0.219 1.219 23 H -0.246 1.246 24 H -0.132 1.132 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.263 0.737 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.092 0.908 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.534 -6.602 -22.631 23.581 hybrid contribution -0.043 -0.021 0.911 0.912 sum 0.490 -6.624 -21.721 22.714 Atomic orbital electron populations 1.22428 0.96138 1.02736 1.02073 1.21567 0.92950 0.97401 0.90463 0.92261 1.20609 0.89983 1.02120 0.96973 1.19958 0.96581 0.94458 0.96751 1.21161 0.94090 0.98173 0.99587 1.21518 0.94462 0.99979 1.01877 1.18648 0.83038 0.95184 0.99548 1.84799 1.16810 1.79740 1.51477 1.21575 0.96068 0.98696 1.01792 1.21020 0.92323 0.99457 0.96916 1.60594 1.57126 1.09621 1.03272 1.21516 0.96952 0.94230 0.89725 1.18457 0.92771 0.93152 0.92089 1.22168 0.98904 0.98067 1.00353 1.22039 0.97715 0.99418 0.98936 1.21254 1.42285 0.96838 0.94635 0.95635 1.25799 0.96479 1.00835 0.94984 1.70111 1.47524 1.42036 0.99303 0.86359 0.78731 0.82259 0.75272 1.21935 1.24552 1.13193 0.94341 0.91327 0.90590 0.89886 0.88945 0.84244 0.84865 0.73687 0.85652 0.85067 0.83768 0.94243 0.97156 0.91642 0.94545 0.94117 0.95431 0.96279 0.90792 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.16 71.98 0.66 -2.75 16 2 C 0.09 1.96 2.58 44.92 0.12 2.07 16 3 H 0.06 1.56 7.80 -2.39 -0.02 1.54 16 4 C -0.06 -1.06 5.03 29.85 0.15 -0.91 16 5 C -0.08 -1.72 4.95 -19.85 -0.10 -1.82 16 6 C -0.11 -2.42 9.69 22.25 0.22 -2.21 16 7 C -0.16 -3.71 9.99 22.37 0.22 -3.48 16 8 C 0.08 2.02 6.71 22.51 0.15 2.17 16 9 O -0.52 -11.89 13.50 -92.42 -1.25 -13.14 16 10 C -0.16 -4.15 9.99 22.37 0.22 -3.93 16 11 C -0.08 -1.92 9.30 22.25 0.21 -1.71 16 12 N -0.67 -19.04 4.85 -491.56 -2.38 -21.43 16 13 C 0.11 4.02 4.37 86.30 0.38 4.40 16 14 C 0.04 1.61 0.57 -52.93 -0.03 1.58 16 15 C -0.14 -5.45 7.24 71.98 0.52 -4.93 16 16 C -0.12 -5.29 7.54 71.98 0.54 -4.75 16 17 C -0.51 -29.26 8.62 25.60 0.22 -29.04 16 18 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 19 C 0.02 0.93 5.32 84.66 0.45 1.38 16 20 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 21 Si 0.94 46.16 22.79 68.60 1.56 47.72 16 22 H -0.29 -14.34 7.10 99.48 0.71 -13.63 16 23 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 24 H -0.21 -8.84 4.65 99.48 0.46 -8.38 16 25 H 0.04 0.91 7.45 -2.38 -0.02 0.89 16 26 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.09 1.26 8.08 -2.38 -0.02 1.24 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.41 4.84 9.06 -74.05 -0.67 4.17 16 33 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.34 8.89 6.74 -89.70 -0.60 8.28 16 36 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.01 0.41 7.44 -2.38 -0.02 0.39 16 38 H 0.06 2.09 7.06 -2.39 -0.02 2.08 16 39 H 0.04 1.55 4.30 -2.39 -0.01 1.54 16 40 H 0.04 1.57 8.12 -2.38 -0.02 1.55 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.02 0.84 2.26 -2.39 -0.01 0.84 16 43 H 0.07 2.68 7.60 -2.39 -0.02 2.66 16 44 H 0.26 15.89 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -70.70 339.99 1.63 -69.07 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.53 Total: 22.26 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 3.93 Total: -43.91 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.08 Total: -81.99 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.25 Total: -13.14 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.56 Total: 47.72 kcal Total: -70.70 1.63 -69.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.084 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds