Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99963 * 2 1 4 4 N 1.46503 * 109.47590 * 125.00070 * 3 2 1 5 5 C 1.46497 * 119.99560 * 270.00110 * 4 3 2 6 6 C 1.50702 * 109.47274 * 269.99493 * 5 4 3 7 7 H 1.08005 * 119.99519 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00502 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00449 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99717 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46989 * 90.00113 * 10 8 6 12 12 H 1.48497 * 109.46892 * 210.00377 * 10 8 6 13 13 H 1.48496 * 109.47080 * 330.00134 * 10 8 6 14 14 C 1.34770 * 120.00196 * 89.99170 * 4 3 2 15 15 O 1.21613 * 120.00304 * 180.02562 * 14 4 3 16 16 C 1.47103 * 120.00155 * 0.02562 * 14 4 3 17 17 C 1.32992 * 120.00452 * 173.00950 * 16 14 4 18 18 C 1.50698 * 119.99801 * 352.52020 * 17 16 14 19 19 C 1.52995 * 109.47412 * 205.21439 * 18 17 16 20 20 C 1.53004 * 109.47472 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46915 * 60.00295 * 20 19 18 22 22 C 1.53002 * 109.46929 * 299.99881 * 21 20 19 23 23 C 1.53004 * 109.47225 * 60.00308 * 22 21 20 24 24 H 1.07998 * 120.00224 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99828 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00130 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47532 * 4.99881 * 3 2 1 28 28 H 1.09000 * 109.46855 * 244.99791 * 3 2 1 29 29 H 1.08999 * 109.47812 * 29.99765 * 5 4 3 30 30 H 1.09010 * 109.47104 * 149.99656 * 5 4 3 31 31 H 0.97001 * 119.99912 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.00050 * 353.00423 * 16 14 4 33 33 H 1.07997 * 120.00529 * 172.52287 * 17 16 14 34 34 H 1.09007 * 109.47383 * 325.21286 * 18 17 16 35 35 H 1.09001 * 109.47418 * 60.00129 * 19 18 17 36 36 H 1.08997 * 109.47271 * 300.00170 * 19 18 17 37 37 H 1.09002 * 109.47241 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47080 * 300.00372 * 20 19 18 39 39 H 1.08999 * 109.47084 * 59.99597 * 21 20 19 40 40 H 1.09002 * 109.47088 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47539 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47399 * 300.00127 * 22 21 20 43 43 H 1.08997 * 109.47080 * 59.99624 * 23 22 21 44 44 H 1.09002 * 109.47241 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5192 4.0668 3.6084 9 7 2.7678 5.3573 3.6567 10 14 1.7246 3.2135 5.0679 11 1 2.7805 2.7223 5.9893 12 1 0.8485 4.1738 5.7858 13 1 0.9129 2.0660 4.5886 14 6 4.2496 0.8662 0.9824 15 8 5.0218 0.8881 1.9217 16 6 4.6865 0.3313 -0.3164 17 6 5.9609 0.0011 -0.5049 18 6 6.9881 0.3296 0.5477 19 6 8.3673 0.4459 -0.1042 20 6 9.4100 0.7801 0.9644 21 6 9.4355 -0.3301 2.0169 22 6 8.0562 -0.4464 2.6689 23 6 7.0135 -0.7806 1.6002 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4887 1.6968 2.5459 30 1 3.0989 1.3605 3.2260 31 1 2.5388 5.8660 4.4502 32 1 3.9723 0.2066 -1.1169 33 1 6.2598 -0.5024 -1.4124 34 1 6.7304 1.2756 1.0241 35 1 8.3494 1.2371 -0.8538 36 1 8.6249 -0.5000 -0.5806 37 1 10.3927 0.8625 0.5000 38 1 9.1522 1.7261 1.4404 39 1 9.6933 -1.2762 1.5408 40 1 10.1781 -0.0918 2.7784 41 1 8.0744 -1.2370 3.4190 42 1 7.7984 0.4996 3.1448 43 1 7.2713 -1.7266 1.1243 44 1 6.0308 -0.8630 2.0647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492880340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = -29.259600 kcal Electronic energy + Delta-G solvation = -22190.761577 eV Core-core repulsion = 19107.707539 eV Total energy + Delta-G solvation = -3083.054039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03127 -39.27221 -37.18951 -35.19082 -34.52996 -33.71228 -31.54966 -31.08057 -29.73967 -26.89823 -25.38830 -23.65747 -23.31676 -21.84701 -20.95011 -20.62863 -19.24497 -19.06343 -18.03307 -17.15698 -16.38872 -16.20333 -15.91290 -15.39199 -15.08918 -15.05137 -14.82996 -14.49747 -14.38104 -14.19799 -13.95921 -13.53785 -13.30114 -13.02920 -12.95988 -12.90162 -12.54901 -12.43991 -12.29129 -12.00451 -11.95854 -11.89731 -11.75148 -11.34740 -11.16640 -10.88647 -10.85019 -10.31500 -10.23272 -10.13063 -9.28795 -8.35688 -6.39966 0.59148 1.28730 1.32862 1.35083 1.42078 2.28459 2.44114 2.60839 2.98677 3.71603 3.86457 3.92845 3.98072 4.11612 4.22798 4.27733 4.40924 4.45669 4.48637 4.60477 4.69668 4.70530 4.75210 4.79298 4.86117 4.87695 4.89684 4.98521 5.08356 5.17571 5.22169 5.31003 5.34043 5.38852 5.45290 5.48674 5.52515 5.59851 5.67977 5.72361 5.85690 5.94255 6.25617 6.61035 6.80138 7.21423 7.53875 8.81403 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.005836 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.191559 B = 4796.477873 C = 6072.805028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.179 4.179 3 C 0.133 3.867 4 N -0.598 5.598 5 C 0.231 3.769 6 C -0.531 4.531 7 H 0.027 0.973 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.241 1.241 14 C 0.518 3.482 15 O -0.569 6.569 16 C -0.229 4.229 17 C -0.049 4.049 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.090 4.090 24 H 0.118 0.882 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.268 0.732 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 -16.229 -10.970 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.011 3.989 4 N -0.328 5.328 5 C 0.109 3.891 6 C -0.570 4.570 7 H 0.045 0.955 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.198 1.198 13 H -0.165 1.165 14 C 0.311 3.689 15 O -0.451 6.451 16 C -0.250 4.250 17 C -0.068 4.068 18 C -0.090 4.090 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.128 4.128 24 H 0.136 0.864 25 H 0.116 0.884 26 H 0.135 0.865 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.658 -16.036 -10.370 19.917 hybrid contribution -0.548 0.746 1.102 1.439 sum 5.109 -15.290 -9.268 18.596 Atomic orbital electron populations 1.24062 0.95500 1.02885 0.98510 1.23322 0.96683 0.98098 1.01681 1.20799 0.92511 0.96285 0.89286 1.47891 1.12201 1.60186 1.12499 1.19188 0.95007 0.92014 0.82940 1.21551 1.40272 0.93519 1.01664 0.95480 1.25814 0.95975 0.95345 1.01434 1.70048 1.49558 1.08439 1.30495 0.85749 0.79086 0.79352 0.78979 1.20231 1.19801 1.16456 1.19413 0.81346 0.77974 0.90214 1.90711 1.52503 1.57877 1.44004 1.22853 0.99077 1.06933 0.96100 1.24073 0.92831 0.90982 0.98907 1.20485 0.94157 0.99601 0.94710 1.21631 0.92945 1.02564 0.97442 1.21537 0.99527 0.97946 0.96876 1.21508 0.95722 0.99528 0.98084 1.21472 0.95903 1.00171 0.97993 1.21314 0.98717 0.97073 0.95684 0.86356 0.88439 0.86520 0.91012 0.88069 0.94150 0.96523 0.92299 0.82715 0.81727 0.92773 0.91911 0.89576 0.90097 0.94574 0.90224 0.91913 0.91978 0.95316 0.91064 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.18 -4.56 9.85 25.65 0.25 -4.31 16 3 C 0.13 4.25 5.52 85.63 0.47 4.72 16 4 N -0.60 -25.25 2.44 -834.79 -2.04 -27.28 16 5 C 0.23 11.70 4.23 85.63 0.36 12.06 16 6 C -0.53 -32.17 9.94 25.60 0.25 -31.91 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 8 C 0.01 0.74 5.47 84.65 0.46 1.20 16 9 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 10 Si 0.95 45.82 27.47 68.60 1.88 47.70 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 14 C 0.52 21.44 7.44 86.57 0.64 22.08 16 15 O -0.57 -27.77 10.61 -4.07 -0.04 -27.81 16 16 C -0.23 -6.66 9.13 23.43 0.21 -6.45 16 17 C -0.05 -1.21 8.85 24.52 0.22 -0.99 16 18 C -0.07 -2.11 1.62 -11.54 -0.02 -2.13 16 19 C -0.11 -2.41 5.18 30.59 0.16 -2.25 16 20 C -0.12 -2.80 5.92 30.60 0.18 -2.61 16 21 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 22 C -0.12 -3.44 5.92 30.60 0.18 -3.25 16 23 C -0.09 -2.70 4.61 30.60 0.14 -2.55 16 24 H 0.12 2.09 8.06 -2.91 -0.02 2.06 16 25 H 0.10 2.21 7.84 -2.91 -0.02 2.18 16 26 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 28 H 0.10 2.68 6.19 -2.39 -0.01 2.67 16 29 H 0.04 1.93 7.13 -2.39 -0.02 1.91 16 30 H 0.02 0.91 6.85 -2.38 -0.02 0.89 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.16 3.40 6.36 -2.91 -0.02 3.38 16 33 H 0.17 2.55 8.05 -2.91 -0.02 2.52 16 34 H 0.05 2.21 6.13 -2.38 -0.01 2.20 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.70 6.09 -2.39 -0.01 1.69 16 Total: -1.00 -75.93 347.28 5.67 -70.27 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.89 Total: 19.35 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 4.67 Total: -21.58 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -1.74 Total: -87.93 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.81 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -75.93 5.67 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492880340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds